Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0108301 Rosa chinensis HOM05D004880 ORTHO05D050686 3.2e-40 167.9 83 100.0
RcHm_v2.0_Chr3g0478791 Rosa chinensis HOM05D004880 ORTHO05D006130 1.1e-24 116.3 84 76.2
FvH4_6g21550 Fragaria vesca HOM05D004880 ORTHO05D006130 1.6e-23 112.5 84 73.8
FAN02G2738 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.6e-23 112.5 84 73.8
FAN05G5497 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.6e-23 112.5 84 73.8
FAN09G2092 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.6e-23 112.5 84 73.8
FAN14G3637 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.6e-23 112.5 84 73.8
Prupe.7G084800 Prunus persica HOM05D004880 ORTHO05D006130 2.1e-23 112.1 84 71.4
MD14G1051200 Malus domestica HOM05D004880 ORTHO05D006130 3.6e-23 111.3 84 69.0
Cfa020124 Carpinus fangiana HOM05D004880 ORTHO05D006130 6.1e-23 110.5 82 72.0
Haze_20052 Corylus avellana HOM05D004880 ORTHO05D006130 6.1e-23 110.5 82 72.0
Haze_20059 Corylus avellana HOM05D004880 ORTHO05D006130 6.1e-23 110.5 82 72.0
MD12G1052800 Malus domestica HOM05D004880 ORTHO05D006130 5.2e-22 107.5 84 66.7
TWI74G0273 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 7.5e-21 103.6 84 65.5
QL10p026397 Quercus lobata HOM05D004880 ORTHO05D006130 2.2e-20 102.1 82 69.5
TWI77G0767 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 3.7e-20 101.3 84 65.5
GSVIVG01033434001 Vitis vinifera HOM05D004880 ORTHO05D006130 3.7e-20 101.3 84 64.3
CiPaw.09G027000 Carya illinoinensis HOM05D004880 ORTHO05D006130 4.8e-20 100.9 82 64.6
Potri.006G196200 Populus trichocarpa HOM05D004880 ORTHO05D006130 6.3e-20 100.5 84 64.3
Atru.chr8.1200 Acer truncatum HOM05D004880 ORTHO05D006130 8.2e-20 100.1 84 63.1
QL07p025081 Quercus lobata HOM05D004880 ORTHO05D006130 1.4e-19 99.4 82 68.3
QL07p025096 Quercus lobata HOM05D004880 ORTHO05D006130 1.4e-19 99.4 82 68.3
Aqoxy2G00483 Aquilegia oxysepala HOM05D004880 ORTHO05D006130 2.4e-19 98.6 84 63.1
Sabra06G0150800 Salix brachista HOM05D004880 ORTHO05D006130 3.1e-19 98.2 84 61.9
CiPaw.10G024300 Carya illinoinensis HOM05D004880 ORTHO05D006130 4.1e-19 97.8 82 65.9
Duzib093G1906 Durio zibethinus HOM05D004880 ORTHO05D006130 4.1e-19 97.8 84 64.3
Cpa.g.sc85.30 Carica papaya HOM05D004880 ORTHO05D006130 5.3e-19 97.4 84 59.5
Dinv24034 Davidia involucrata HOM05D004880 ORTHO05D006130 5.3e-19 97.4 85 63.5
Potri.016G062100 Populus trichocarpa HOM05D004880 ORTHO05D006130 5.3e-19 97.4 84 60.7
Actinidia22070 Actinidia chinensis HOM05D004880 ORTHO05D006130 7.0e-19 97.1 84 61.9
Ciclev10011869m.g Citrus clementina HOM05D004880 ORTHO05D006130 7.0e-19 97.1 84 59.5
Sabra16G0064000 Salix brachista HOM05D004880 ORTHO05D006130 7.0e-19 97.1 84 60.7
Thecc.05G178700 Theobroma cacao HOM05D004880 ORTHO05D006130 7.0e-19 97.1 84 65.5
THA.LOC104802772 Tarenaya hassleriana HOM05D004880 ORTHO05D006130 1.2e-18 96.3 84 63.1
TAR623G0618 Trochodendron aralioides HOM05D004880 ORTHO05D006130 1.2e-18 96.3 84 58.3
Gohir.A09G129600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 1.6e-18 95.9 84 64.3
Gohir.D09G125600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 1.6e-18 95.9 84 64.3
Gorai.006G144600 Gossypium raimondii HOM05D004880 ORTHO05D006130 1.6e-18 95.9 84 64.3
Aa31LG10G13060 Aethionema arabicum HOM05D004880 ORTHO05D006130 2.0e-18 95.5 83 65.1
ClCG04G001360 Citrullus lanatus HOM05D004880 ORTHO05D006130 2.0e-18 95.5 84 59.5
Cc06_g23350 Coffea canephora HOM05D004880 ORTHO05D006130 2.0e-18 95.5 83 57.8
Duzib128G0581 Durio zibethinus HOM05D004880 ORTHO05D006130 2.0e-18 95.5 84 61.9
Oeu063855.2 Olea europaea HOM05D004880 ORTHO05D006130 2.7e-18 95.1 82 61.0
Rhsim03G0002700 Rhododendron simsii HOM05D004880 ORTHO05D006130 2.7e-18 95.1 84 60.7
SGA_v2.0_scaffold274G46503 Striga asiatica HOM05D004880 ORTHO05D006130 2.7e-18 95.1 82 57.3
Manes.09G040000 Manihot esculenta HOM05D004880 ORTHO05D006130 4.5e-18 94.4 82 59.8
Sed0002439 Sechium edule HOM05D004880 ORTHO05D006130 5.9e-18 94.0 83 60.2
Peaxi162Scf00463g00322 Petunia axillaris HOM05D004880 ORTHO05D006130 7.7e-18 93.6 84 53.6
COL.COLO4_29395 Corchorus olitorius HOM05D004880 ORTHO05D006130 1.0e-17 93.2 84 61.9
CsaV3_4G031170 Cucumis sativus L. HOM05D004880 ORTHO05D006130 1.0e-17 93.2 83 60.2
Nitab4.5_0005082g0030 Nicotiana tabacum HOM05D004880 ORTHO05D006130 1.0e-17 93.2 84 54.8
RhsimUnG0014100 Rhododendron simsii HOM05D004880 ORTHO05D006130 1.3e-17 92.8 84 59.5
CSS0031126 Camellia sinensis var. sinensis HOM05D004880 ORTHO05D006130 2.9e-17 91.7 84 59.5
CANSAT64G2835 Cannabis sativa HOM05D004880 ORTHO05D006130 2.9e-17 91.7 87 57.5
CAN.G8.1 Capsicum annuum HOM05D004880 ORTHO05D006130 2.9e-17 91.7 84 53.6
Manes.08G040500 Manihot esculenta HOM05D004880 ORTHO05D006130 2.9e-17 91.7 85 57.6
Eucgr.K01870 Eucalyptus grandis HOM05D004880 ORTHO05D006130 3.8e-17 91.3 84 59.5
RhsimUnG0013900 Rhododendron simsii HOM05D004880 ORTHO05D050686 3.8e-17 91.3 98 53.1
Dinv16341 Davidia involucrata HOM05D004880 ORTHO05D006130 6.5e-17 90.5 84 58.3
Lalb_Chr01g0017621 Lupinus albus HOM05D004880 ORTHO05D006130 6.5e-17 90.5 74 63.5
MSTRG.26074 Avicennia marina HOM05D004880 ORTHO05D006130 8.5e-17 90.1 83 54.2
Nitab4.5_0002532g0010 Nicotiana tabacum HOM05D004880 ORTHO05D006130 8.5e-17 90.1 84 53.6
MELO3C008990.2 Cucumis melo HOM05D004880 ORTHO05D006130 1.1e-16 89.7 83 61.4
Migut.J01871 Erythranthe guttata HOM05D004880 ORTHO05D006130 1.1e-16 89.7 84 56.0
Sc13g0002510 Simmondsia chinensis HOM05D004880 ORTHO05D006130 1.1e-16 89.7 81 56.8
Actinidia38600 Actinidia chinensis HOM05D004880 ORTHO05D006130 1.5e-16 89.4 84 56.0
Rhsim03G0002900 Rhododendron simsii HOM05D004880 ORTHO05D006130 1.5e-16 89.4 90 54.4
CARHR168890 Cardamine hirsuta HOM05D004880 ORTHO05D006130 1.9e-16 89.0 88 56.8
Thhalv10006516m.g Eutrema salsugineum HOM05D004880 ORTHO05D006130 2.5e-16 88.6 88 56.8
PGSC0003DMG400001105 Solanum tuberosum HOM05D004880 ORTHO05D006130 2.5e-16 88.6 84 51.2
TAR633G2404 Trochodendron aralioides HOM05D004880 ORTHO05D006130 2.5e-16 88.6 84 59.5
PGR142G4320 Punica granatum HOM05D004880 ORTHO05D006130 3.2e-16 88.2 85 62.4
Sp5g04380 Schrenkiella parvula HOM05D004880 ORTHO05D006130 3.2e-16 88.2 88 56.8
Solyc03g051970.3 Solanum lycopersicum HOM05D004880 ORTHO05D006130 3.2e-16 88.2 84 51.2
Sopen03g011420 Solanum pennellii HOM05D004880 ORTHO05D006130 3.2e-16 88.2 84 51.2
EL10Ac3g06851 Beta vulgaris HOM05D004880 ORTHO05D006130 7.2e-16 87.0 78 61.5
BcaC08g44920 Brassica carinata HOM05D004880 ORTHO05D006130 7.2e-16 87.0 88 54.5
C06p25460 Brassica napus HOM05D004880 ORTHO05D006130 7.2e-16 87.0 88 54.5
BolC6t37708H Brassica oleracea HOM05D004880 ORTHO05D006130 7.2e-16 87.0 88 54.5
Lj1g0004925 Lotus japonicus HOM05D004880 ORTHO05D006130 7.2e-16 87.0 84 59.5
SalBow1G7250 Salvia bowleyana HOM05D004880 ORTHO05D006130 7.2e-16 87.0 82 59.8
SalBow6G2644 Salvia bowleyana HOM05D004880 ORTHO05D006130 7.2e-16 87.0 84 56.0
Ah.04g153030 Amaranthus hybridus HOM05D004880 ORTHO05D006130 9.4e-16 86.7 86 55.8
Ah.13g075550 Amaranthus hybridus HOM05D004880 ORTHO05D006130 9.4e-16 86.7 84 56.0
AT3G58490 Arabidopsis thaliana HOM05D004880 ORTHO05D006130 9.4e-16 86.7 85 57.6
Lj1A1134T63 Lonicera japonica HOM05D004880 ORTHO05D006130 9.4e-16 86.7 86 54.7
A07p24150 Brassica napus HOM05D004880 ORTHO05D006130 1.2e-15 86.3 88 54.5
BraA07t30059Z Brassica rapa HOM05D004880 ORTHO05D006130 1.2e-15 86.3 88 54.5
Lsat_1_v5_gn_2_57080 Lactuca sativa HOM05D004880 ORTHO05D006130 1.6e-15 85.9 85 57.6
Glyma.03G207000 Glycine max HOM05D004880 ORTHO05D006130 2.1e-15 85.5 84 60.7
TAR636G0255 Trochodendron aralioides HOM05D004880 ORTHO05D006130 2.1e-15 85.5 84 57.1
Carub.0005s2524 Capsella rubella HOM05D004880 ORTHO05D006130 2.7e-15 85.1 88 54.5
AL5G40260 Arabidopsis lyrata HOM05D004880 ORTHO05D006130 3.6e-15 84.7 88 55.7
arahy.Tifrunner.gnm1.ann1.4QW8I5 Arachis hypogaea HOM05D004880 ORTHO05D006130 4.7e-15 84.3 81 60.5
AUR62015294 Chenopodium quinoa HOM05D004880 ORTHO05D006130 4.7e-15 84.3 85 54.1
arahy.Tifrunner.gnm1.ann1.LHW1VF Arachis hypogaea HOM05D004880 ORTHO05D006130 6.1e-15 84.0 80 61.2
HanXRQChr14g0438921 Helianthus annuus HOM05D004880 ORTHO05D006130 6.1e-15 84.0 85 56.5
Lalb_Chr20g0111081 Lupinus albus HOM05D004880 ORTHO05D006130 8.0e-15 83.6 74 62.2
ECA248G1283 Erigeron canadensis HOM05D004880 ORTHO05D006130 1.0e-14 83.2 85 55.3
Nn7g35913 Nelumbo nucifera HOM05D004880 ORTHO05D006130 1.4e-14 82.8 84 57.1
DCAR_013674 Daucus carota HOM05D004880 ORTHO05D006130 2.3e-14 82.0 84 52.4
Hma1.2p1_0124F.1_g058410 Hydrangea macrophylla HOM05D004880 ORTHO05D006130 2.3e-14 82.0 84 54.8
DCAR_017041 Daucus carota HOM05D004880 ORTHO05D006130 3.0e-14 81.6 84 51.2
Glyma.19G204500 Glycine max HOM05D004880 ORTHO05D006130 3.0e-14 81.6 84 58.3
HanXRQChr01g0024571 Helianthus annuus HOM05D004880 ORTHO05D006130 8.8e-14 80.1 84 53.6
PSO384G1868 Papaver somniferum HOM05D004880 ORTHO05D006130 8.8e-14 80.1 84 52.4
VMungo1383G0203 Vigna mungo HOM05D004880 ORTHO05D006130 1.5e-13 79.3 84 59.5
Lalb_Chr25g0287641 Lupinus albus HOM05D004880 ORTHO05D006130 2.0e-13 79.0 75 57.3
Lsat_1_v5_gn_1_60360 Lactuca sativa HOM05D004880 ORTHO05D006130 2.6e-13 78.6 83 53.0
PSO339G2581 Papaver somniferum HOM05D004880 ORTHO05D006130 2.6e-13 78.6 84 51.2
HPP92_023567 Vanilla planifolia HOM05D004880 ORTHO05D006130 2.6e-13 78.6 85 50.6
Lj2A362T41 Lonicera japonica HOM05D004880 ORTHO05D006130 3.4e-13 78.2 82 48.8
Phvul.001G200400 Phaseolus vulgaris HOM05D004880 ORTHO05D006130 4.4e-13 77.8 84 57.1
MBI04_g09734_MAGBIO Magnolia biondii HOM05D004880 ORTHO05D006130 5.7e-13 77.4 85 51.8
AUR62032743 Chenopodium quinoa HOM05D004880 ORTHO05D006130 7.5e-13 77.0 87 48.3
Os03g0805400 Oryza sativa ssp. japonica HOM05D004880 ORTHO05D006130 9.8e-13 76.6 84 51.2
Aa31LG1G24310 Aethionema arabicum HOM05D004880 ORTHO05D006130 3.7e-12 74.7 84 52.4
ATR0001G036 Amborella trichopoda HOM05D004880 ORTHO05D006130 4.8e-12 74.3 84 48.8
ECA238G1506 Erigeron canadensis HOM05D004880 ORTHO05D001620 6.3e-12 73.9 80 52.5
HPP92_007945 Vanilla planifolia HOM05D004880 ORTHO05D006130 6.3e-12 73.9 84 46.4
PSO339G4595 Papaver somniferum HOM05D004880 ORTHO05D006130 8.3e-12 73.6 84 51.2
PSO384G4146 Papaver somniferum HOM05D004880 ORTHO05D006130 5.4e-11 70.9 84 50.0
Zm00001eb212610 Zea mays HOM05D004880 ORTHO05D006130 3.5e-10 68.2 83 47.0
Ca_09100_v3 Cicer arietinum L. HOM05D004880 ORTHO05D006130 7.7e-10 67.0 74 52.7
TPR.G32306 Trifolium pratense HOM05D004880 ORTHO05D006130 1.0e-09 66.6 80 50.0
Zm00001eb061460 Zea mays HOM05D004880 ORTHO05D006130 1.3e-09 66.2 89 49.4
Medtr7g107270 Medicago truncatula HOM05D004880 ORTHO05D006130 3.8e-09 64.7 80 47.5
CDE10G0990 Ceratophyllum demersum HOM05D004880 ORTHO05D006130 8.5e-09 63.5 89 43.8
HPP92_020367 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.5e-08 62.8 90 41.1
SEGI_41601 Sequoiadendron giganteum HOM05D004880 ORTHO05D006130 2.5e-08 62.0 92 37.0
vmacro12554 Vaccinium macrocarpon HOM05D004880 ORTHO05D006130 6.1e-07 57.4 52 61.5


User provided reference genes

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