Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0108291 Rosa chinensis HOM05D004880 ORTHO05D006130 8.7e-50 199.9 95 100.0
AT3G58490 Arabidopsis thaliana HOM05D004880 ORTHO05D006130 1.1e-20 103.2 79 64.6
CARHR168890 Cardamine hirsuta HOM05D004880 ORTHO05D006130 1.1e-20 103.2 78 65.4
Prupe.7G084800 Prunus persica HOM05D004880 ORTHO05D006130 1.1e-20 103.2 70 71.4
Thecc.05G178700 Theobroma cacao HOM05D004880 ORTHO05D006130 1.1e-20 103.2 70 71.4
FvH4_6g21550 Fragaria vesca HOM05D004880 ORTHO05D006130 1.5e-20 102.8 70 71.4
FAN02G2738 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.5e-20 102.8 70 71.4
FAN05G5497 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.5e-20 102.8 70 71.4
FAN09G2092 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.5e-20 102.8 70 71.4
FAN14G3637 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.5e-20 102.8 70 71.4
AL5G40260 Arabidopsis lyrata HOM05D004880 ORTHO05D006130 1.9e-20 102.4 78 65.4
Duzib093G1906 Durio zibethinus HOM05D004880 ORTHO05D006130 1.9e-20 102.4 70 71.4
RcHm_v2.0_Chr3g0478791 Rosa chinensis HOM05D004880 ORTHO05D006130 2.5e-20 102.1 70 71.4
BcaC08g44920 Brassica carinata HOM05D004880 ORTHO05D006130 3.2e-20 101.7 70 70.0
A07p24150 Brassica napus HOM05D004880 ORTHO05D006130 3.2e-20 101.7 70 70.0
C06p25460 Brassica napus HOM05D004880 ORTHO05D006130 3.2e-20 101.7 70 70.0
BolC6t37708H Brassica oleracea HOM05D004880 ORTHO05D006130 3.2e-20 101.7 70 70.0
BraA07t30059Z Brassica rapa HOM05D004880 ORTHO05D006130 3.2e-20 101.7 70 70.0
Duzib128G0581 Durio zibethinus HOM05D004880 ORTHO05D006130 3.2e-20 101.7 70 70.0
Thhalv10006516m.g Eutrema salsugineum HOM05D004880 ORTHO05D006130 3.2e-20 101.7 70 70.0
Sp5g04380 Schrenkiella parvula HOM05D004880 ORTHO05D006130 4.2e-20 101.3 70 68.6
Carub.0005s2524 Capsella rubella HOM05D004880 ORTHO05D006130 7.2e-20 100.5 79 60.8
Manes.08G040500 Manihot esculenta HOM05D004880 ORTHO05D006130 7.2e-20 100.5 70 70.0
CANSAT64G2835 Cannabis sativa HOM05D004880 ORTHO05D006130 9.4e-20 100.1 70 67.1
Eucgr.K01870 Eucalyptus grandis HOM05D004880 ORTHO05D006130 9.4e-20 100.1 70 65.7
MD14G1051200 Malus domestica HOM05D004880 ORTHO05D006130 9.4e-20 100.1 70 68.6
Potri.016G062100 Populus trichocarpa HOM05D004880 ORTHO05D006130 1.6e-19 99.4 70 68.6
Actinidia22070 Actinidia chinensis HOM05D004880 ORTHO05D006130 2.1e-19 99.0 70 65.7
CiPaw.10G024300 Carya illinoinensis HOM05D004880 ORTHO05D006130 2.1e-19 99.0 70 68.6
SalBow6G2644 Salvia bowleyana HOM05D004880 ORTHO05D006130 2.1e-19 99.0 70 68.6
Aa31LG10G13060 Aethionema arabicum HOM05D004880 ORTHO05D006130 2.7e-19 98.6 78 62.8
Haze_20052 Corylus avellana HOM05D004880 ORTHO05D006130 2.7e-19 98.6 70 70.0
MD12G1052800 Malus domestica HOM05D004880 ORTHO05D006130 2.7e-19 98.6 70 68.6
Manes.09G040000 Manihot esculenta HOM05D004880 ORTHO05D006130 2.7e-19 98.6 70 67.1
Ah.04g153030 Amaranthus hybridus HOM05D004880 ORTHO05D006130 3.6e-19 98.2 70 65.7
EL10Ac3g06851 Beta vulgaris HOM05D004880 ORTHO05D006130 3.6e-19 98.2 70 65.7
MELO3C008990.2 Cucumis melo HOM05D004880 ORTHO05D006130 3.6e-19 98.2 70 68.6
Sed0002439 Sechium edule HOM05D004880 ORTHO05D006130 3.6e-19 98.2 70 67.1
Cpa.g.sc85.30 Carica papaya HOM05D004880 ORTHO05D006130 4.7e-19 97.8 70 64.3
ClCG04G001360 Citrullus lanatus HOM05D004880 ORTHO05D006130 4.7e-19 97.8 70 68.6
Actinidia38600 Actinidia chinensis HOM05D004880 ORTHO05D006130 6.1e-19 97.4 70 64.3
CsaV3_4G031170 Cucumis sativus L. HOM05D004880 ORTHO05D006130 6.1e-19 97.4 70 67.1
Glyma.19G204500 Glycine max HOM05D004880 ORTHO05D006130 6.1e-19 97.4 70 67.1
Lalb_Chr20g0111071 Lupinus albus HOM05D004880 ORTHO05D006130 6.1e-19 97.4 73 64.4
Nn7g35913 Nelumbo nucifera HOM05D004880 ORTHO05D006130 6.1e-19 97.4 70 64.3
Phvul.001G200400 Phaseolus vulgaris HOM05D004880 ORTHO05D006130 6.1e-19 97.4 70 68.6
GSVIVG01033434001 Vitis vinifera HOM05D004880 ORTHO05D006130 6.1e-19 97.4 70 65.7
Cfa020124 Carpinus fangiana HOM05D004880 ORTHO05D006130 8.0e-19 97.1 70 68.6
COL.COLO4_29395 Corchorus olitorius HOM05D004880 ORTHO05D006130 8.0e-19 97.1 50 90.0
Haze_20059 Corylus avellana HOM05D004880 ORTHO05D006130 8.0e-19 97.1 70 68.6
Gohir.A09G129600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 8.0e-19 97.1 70 67.1
Gohir.D09G125600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 8.0e-19 97.1 70 67.1
Gorai.006G144600 Gossypium raimondii HOM05D004880 ORTHO05D006130 8.0e-19 97.1 70 67.1
VMungo1383G0203 Vigna mungo HOM05D004880 ORTHO05D006130 8.0e-19 97.1 70 67.1
Aa31LG1G24310 Aethionema arabicum HOM05D004880 ORTHO05D006130 1.0e-18 96.7 86 58.1
Ah.13g075550 Amaranthus hybridus HOM05D004880 ORTHO05D006130 1.0e-18 96.7 70 64.3
Dinv16340 Davidia involucrata HOM05D004880 ORTHO05D006130 1.0e-18 96.7 70 67.1
Migut.J01871 Erythranthe guttata HOM05D004880 ORTHO05D006130 1.0e-18 96.7 70 65.7
Lj1g0004925 Lotus japonicus HOM05D004880 ORTHO05D006130 1.0e-18 96.7 70 67.1
TWI74G0273 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 1.0e-18 96.7 70 62.9
Ca_09100_v3 Cicer arietinum L. HOM05D004880 ORTHO05D006130 1.4e-18 96.3 70 65.7
Ciclev10011869m.g Citrus clementina HOM05D004880 ORTHO05D006130 1.4e-18 96.3 70 67.1
Medtr7g107270 Medicago truncatula HOM05D004880 ORTHO05D006130 1.4e-18 96.3 70 65.7
Sabra16G0064000 Salix brachista HOM05D004880 ORTHO05D006130 1.4e-18 96.3 70 67.1
TPR.G32306 Trifolium pratense HOM05D004880 ORTHO05D006130 1.4e-18 96.3 70 65.7
Glyma.03G207000 Glycine max HOM05D004880 ORTHO05D006130 1.8e-18 95.9 70 65.7
MSTRG.26074 Avicennia marina HOM05D004880 ORTHO05D006130 2.3e-18 95.5 70 64.3
Oeu063855.2 Olea europaea HOM05D004880 ORTHO05D006130 2.3e-18 95.5 70 64.3
Potri.006G196200 Populus trichocarpa HOM05D004880 ORTHO05D006130 2.3e-18 95.5 70 65.7
SHI30063 Sapria himalayana HOM05D004880 ORTHO05D006130 2.3e-18 95.5 70 67.1
THA.LOC104802772 Tarenaya hassleriana HOM05D004880 ORTHO05D006130 2.3e-18 95.5 70 65.7
Atru.chr8.1200 Acer truncatum HOM05D004880 ORTHO05D006130 3.0e-18 95.1 70 65.7
Psat3g026000 Pisum sativum HOM05D004880 ORTHO05D006130 3.0e-18 95.1 70 64.3
QL10p026397 Quercus lobata HOM05D004880 ORTHO05D006130 3.0e-18 95.1 70 68.6
Hund19219 Selenicereus undatus HOM05D004880 ORTHO05D006130 3.0e-18 95.1 70 65.7
SGA_v2.0_scaffold274G46503 Striga asiatica HOM05D004880 ORTHO05D006130 3.0e-18 95.1 70 64.3
Oeu057591.1 Olea europaea HOM05D004880 ORTHO05D006130 4.0e-18 94.7 70 62.9
QL07p025081 Quercus lobata HOM05D004880 ORTHO05D006130 4.0e-18 94.7 70 68.6
QL07p025096 Quercus lobata HOM05D004880 ORTHO05D006130 4.0e-18 94.7 70 68.6
Sc13g0002510 Simmondsia chinensis HOM05D004880 ORTHO05D006130 4.0e-18 94.7 70 64.3
TAR633G2404 Trochodendron aralioides HOM05D004880 ORTHO05D006130 4.0e-18 94.7 70 64.3
arahy.Tifrunner.gnm1.ann1.4QW8I5 Arachis hypogaea HOM05D004880 ORTHO05D006130 5.2e-18 94.4 70 67.1
arahy.Tifrunner.gnm1.ann1.LHW1VF Arachis hypogaea HOM05D004880 ORTHO05D006130 5.2e-18 94.4 70 67.1
Dinv24034 Davidia involucrata HOM05D004880 ORTHO05D006130 5.2e-18 94.4 70 64.3
AUR62015294 Chenopodium quinoa HOM05D004880 ORTHO05D006130 6.8e-18 94.0 70 62.9
AUR62032743 Chenopodium quinoa HOM05D004880 ORTHO05D006130 6.8e-18 94.0 70 62.9
Lalb_Chr01g0017621 Lupinus albus HOM05D004880 ORTHO05D006130 6.8e-18 94.0 70 65.7
TWI77G0767 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 6.8e-18 94.0 70 62.9
Aqoxy2G00483 Aquilegia oxysepala HOM05D004880 ORTHO05D006130 8.8e-18 93.6 70 62.9
Lj1A1134T63 Lonicera japonica HOM05D004880 ORTHO05D006130 8.8e-18 93.6 70 64.3
SalBow1G7250 Salvia bowleyana HOM05D004880 ORTHO05D006130 8.8e-18 93.6 70 64.3
PGR142G4320 Punica granatum HOM05D004880 ORTHO05D006130 1.2e-17 93.2 70 62.9
DCAR_013674 Daucus carota HOM05D004880 ORTHO05D006130 1.5e-17 92.8 70 61.4
CiPaw.09G027000 Carya illinoinensis HOM05D004880 ORTHO05D006130 2.0e-17 92.4 70 65.7
Cc06_g23350 Coffea canephora HOM05D004880 ORTHO05D006130 2.0e-17 92.4 70 61.4
Lalb_Chr25g0287641 Lupinus albus HOM05D004880 ORTHO05D006130 2.0e-17 92.4 70 64.3
CAN.G8.1 Capsicum annuum HOM05D004880 ORTHO05D006130 3.4e-17 91.7 70 62.9
ECA248G1283 Erigeron canadensis HOM05D004880 ORTHO05D006130 3.4e-17 91.7 70 64.3
Rhsim03G0002700 Rhododendron simsii HOM05D004880 ORTHO05D006130 3.4e-17 91.7 70 62.9
RhsimUnG0014100 Rhododendron simsii HOM05D004880 ORTHO05D006130 3.4e-17 91.7 70 62.9
DCAR_017041 Daucus carota HOM05D004880 ORTHO05D006130 4.4e-17 91.3 70 60.0
Sabra06G0150800 Salix brachista HOM05D004880 ORTHO05D006130 4.4e-17 91.3 70 62.9
Nitab4.5_0005082g0030 Nicotiana tabacum HOM05D004880 ORTHO05D006130 5.7e-17 90.9 70 62.9
HanXRQChr01g0024571 Helianthus annuus HOM05D004880 ORTHO05D006130 9.8e-17 90.1 70 62.9
Sopen03g011420 Solanum pennellii HOM05D004880 ORTHO05D006130 1.7e-16 89.4 70 61.4
PGSC0003DMG400001105 Solanum tuberosum HOM05D004880 ORTHO05D006130 1.7e-16 89.4 70 61.4
TAR623G0618 Trochodendron aralioides HOM05D004880 ORTHO05D006130 1.7e-16 89.4 70 61.4
Lj2A362T41 Lonicera japonica HOM05D004880 ORTHO05D006130 2.2e-16 89.0 68 63.2
Solyc03g051970.3 Solanum lycopersicum HOM05D004880 ORTHO05D006130 3.7e-16 88.2 70 61.4
Os03g0805400 Oryza sativa ssp. japonica HOM05D004880 ORTHO05D006130 4.8e-16 87.8 70 60.0
Lsat_1_v5_gn_1_60360 Lactuca sativa HOM05D004880 ORTHO05D006130 6.3e-16 87.4 70 60.0
vmacro12554 Vaccinium macrocarpon HOM05D004880 ORTHO05D006130 8.3e-16 87.0 70 58.6
MBI04_g09734_MAGBIO Magnolia biondii HOM05D004880 ORTHO05D006130 1.1e-15 86.7 70 58.6
PSO339G2581 Papaver somniferum HOM05D004880 ORTHO05D006130 1.4e-15 86.3 70 58.6
PSO384G1868 Papaver somniferum HOM05D004880 ORTHO05D006130 1.4e-15 86.3 70 58.6
HPP92_023567 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.4e-15 86.3 70 57.1
Zm00001eb212610 Zea mays HOM05D004880 ORTHO05D006130 1.4e-15 86.3 70 57.1
TAR636G0255 Trochodendron aralioides HOM05D004880 ORTHO05D006130 1.8e-15 85.9 70 62.9
ECA238G1506 Erigeron canadensis HOM05D004880 ORTHO05D001620 2.4e-15 85.5 70 58.6
HPP92_007945 Vanilla planifolia HOM05D004880 ORTHO05D006130 2.4e-15 85.5 69 56.5
Nitab4.5_0002532g0010 Nicotiana tabacum HOM05D004880 ORTHO05D006130 5.4e-15 84.3 70 60.0
Zm00001eb061460 Zea mays HOM05D004880 ORTHO05D006130 5.4e-15 84.3 70 57.1
ATR0001G036 Amborella trichopoda HOM05D004880 ORTHO05D006130 2.0e-14 82.4 70 55.7
PSO384G4146 Papaver somniferum HOM05D004880 ORTHO05D006130 4.5e-14 81.3 70 54.3
FvH4_1g29340 Fragaria vesca HOM05D004880 ORTHO05D006130 5.9e-14 80.9 66 65.2
HanXRQChr14g0438921 Helianthus annuus HOM05D004880 ORTHO05D006130 5.9e-14 80.9 70 57.1
CDE10G0990 Ceratophyllum demersum HOM05D004880 ORTHO05D006130 7.7e-14 80.5 70 54.3
Zm00001eb272460 Zea mays HOM05D004880 ORTHO05D006130 7.7e-14 80.5 70 54.3
HPP92_020366 Vanilla planifolia HOM05D004880 ORTHO05D006130 2.9e-13 78.6 70 57.1
PSO339G4595 Papaver somniferum HOM05D004880 ORTHO05D006130 3.8e-13 78.2 70 52.9
Mapoly0023s0042 Marchantia polymorpha HOM05D004880 ORTHO05D006130 8.6e-13 77.0 70 54.3
Rhsim03G0002900 Rhododendron simsii HOM05D004880 ORTHO05D006130 1.1e-12 76.6 68 57.4
SMO356G0032 Selaginella moellendorffii HOM05D004880 ORTHO05D006130 1.5e-12 76.3 69 52.2
SEGI_41601 Sequoiadendron giganteum HOM05D004880 ORTHO05D006130 3.2e-12 75.1 70 51.4
Zm00001eb359710 Zea mays HOM05D004880 ORTHO05D006130 1.2e-11 73.2 65 55.4
Lsat_1_v5_gn_2_57080 Lactuca sativa HOM05D004880 ORTHO05D006130 6.1e-11 70.9 70 57.1
AagrBONN_evm.TU.Sc2ySwM_362.985 Anthoceros agrestis HOM05D004880 ORTHO05D006130 1.2e-09 66.6 70 48.6
Pp3c11_15430 Physcomitrium patens HOM05D004880 ORTHO05D006130 4.9e-08 61.2 70 45.7
Peaxi162Scf00463g00322 Petunia axillaris HOM05D004880 ORTHO05D006130 4.1e-07 58.2 54 53.7


User provided reference genes

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