Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0107481 Rosa chinensis HOM05D004032 ORTHO05D004462 2.9e-97 358.6 186 100.0
FAN28G1831 Fragaria x ananassa HOM05D004032 ORTHO05D004462 4.2e-88 328.2 186 92.5
FvH4_1g17290 Fragaria vesca HOM05D004032 ORTHO05D004462 1.0e-78 297.0 186 86.6
FAN19G2997 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.0e-78 297.0 186 86.6
Prupe.6G223500 Prunus persica HOM05D004032 ORTHO05D004462 3.2e-64 248.8 227 67.0
FAN26G2221 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.2e-63 246.9 186 74.7
FAN23G1545 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.1e-61 240.4 186 73.1
Haze_15306 Corylus avellana HOM05D004032 ORTHO05D004462 2.2e-49 199.5 221 58.4
QL06p039858 Quercus lobata HOM05D004032 ORTHO05D004462 8.5e-49 197.6 216 59.3
MD15G1293900 Malus domestica HOM05D004032 ORTHO05D004462 5.2e-46 188.3 240 54.2
CiPaw.02G004200 Carya illinoinensis HOM05D004032 ORTHO05D004462 1.5e-45 186.8 224 54.5
Manes.13G113400 Manihot esculenta HOM05D004032 ORTHO05D004462 4.4e-45 185.3 216 55.6
CiPaw.01G006700 Carya illinoinensis HOM05D004032 ORTHO05D004462 5.7e-45 184.9 224 54.9
MD02G1182600 Malus domestica HOM05D004032 ORTHO05D004462 1.7e-44 183.3 237 54.9
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 3.1e-43 179.1 192 57.8
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 3.8e-41 172.2 214 55.6
Duzib187G1312 Durio zibethinus HOM05D004032 ORTHO05D004462 3.2e-40 169.1 217 55.8
GSVIVG01000145001 Vitis vinifera HOM05D004032 ORTHO05D004462 7.2e-40 167.9 218 54.1
Potri.007G053300 Populus trichocarpa HOM05D004032 ORTHO05D004462 1.6e-39 166.8 223 52.5
Potri.005G145800 Populus trichocarpa HOM05D004032 ORTHO05D004462 2.7e-39 166.0 221 53.4
TPR.G23878 Trifolium pratense HOM05D004032 ORTHO05D004462 2.7e-39 166.0 203 53.7
Manes.12G111200 Manihot esculenta HOM05D004032 ORTHO05D004462 6.1e-39 164.9 223 51.1
Psat4g083520 Pisum sativum HOM05D004032 ORTHO05D004462 6.1e-39 164.9 203 52.7
Phvul.003G236700 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 2.3e-38 162.9 215 53.5
Thecc.01G069300 Theobroma cacao HOM05D004032 ORTHO05D004462 2.3e-38 162.9 220 54.1
VMungo0251G2494 Vigna mungo HOM05D004032 ORTHO05D004462 2.3e-38 162.9 215 53.0
Medtr4g095440 Medicago truncatula HOM05D004032 ORTHO05D004462 5.2e-38 161.8 207 53.1
TWI53G0135 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 6.7e-38 161.4 187 56.7
Gohir.A11G216800 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.2e-37 160.6 220 54.1
Gohir.D11G206500 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.5e-37 160.2 220 54.5
Lj4g0009335 Lotus japonicus HOM05D004032 ORTHO05D004462 2.0e-37 159.8 202 55.9
Glyma.05G103900 Glycine max HOM05D004032 ORTHO05D004462 4.4e-37 158.7 215 53.0
Gorai.007G221700 Gossypium raimondii HOM05D004032 ORTHO05D004462 5.7e-37 158.3 220 54.1
Glyma.17G163400 Glycine max HOM05D004032 ORTHO05D004462 1.3e-36 157.1 215 53.0
CSS0002661 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 1.7e-36 156.8 209 51.7
CSS0031607 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 2.2e-36 156.4 209 51.7
Duzib147G1493 Durio zibethinus HOM05D004032 ORTHO05D004462 3.7e-36 155.6 223 53.8
Ciclev10026503m.g Citrus clementina HOM05D004032 ORTHO05D004462 8.3e-36 154.5 213 47.9
COL.COLO4_11544 Corchorus olitorius HOM05D004032 ORTHO05D004462 2.0e-34 149.8 198 55.1
Dinv30069 Davidia involucrata HOM05D004032 ORTHO05D004462 1.0e-33 147.5 217 49.3
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 1.7e-33 146.7 202 52.0
HanXRQChr12g0373191 Helianthus annuus HOM05D004032 ORTHO05D004462 3.8e-33 145.6 196 49.0
Sabra05G0116500 Salix brachista HOM05D004032 ORTHO05D004462 5.0e-33 145.2 206 49.5
Glyma.11G049700 Glycine max HOM05D004032 ORTHO05D004462 1.9e-32 143.3 220 45.9
Eucgr.I00716 Eucalyptus grandis HOM05D004032 ORTHO05D004462 2.5e-32 142.9 210 48.1
Aqoxy6G02719 Aquilegia oxysepala HOM05D004032 ORTHO05D004462 3.2e-32 142.5 218 47.2
Actinidia16438 Actinidia chinensis HOM05D004032 ORTHO05D004462 4.2e-32 142.1 190 52.6
DCAR_010831 Daucus carota HOM05D004032 ORTHO05D004462 1.2e-31 140.6 206 47.1
vmacro05391 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 1.6e-31 140.2 193 51.3
Glyma.01G192400 Glycine max HOM05D004032 ORTHO05D004462 2.7e-31 139.4 218 44.5
Gohir.D03G027200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.8e-30 136.7 219 51.6
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 1.8e-30 136.7 193 51.3
Rhsim10G0102400 Rhododendron simsii HOM05D004032 ORTHO05D004462 3.0e-30 136.0 197 49.2
TWI73G0275 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 3.0e-30 136.0 184 50.0
Gorai.003G028900 Gossypium raimondii HOM05D004032 ORTHO05D004462 4.0e-30 135.6 220 51.8
DCAR_025783 Daucus carota HOM05D004032 ORTHO05D004462 1.2e-29 134.0 224 45.5
Gohir.A02G153200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.2e-29 134.0 218 51.4
Cpa.g.sc6.44 Carica papaya HOM05D004032 ORTHO05D004462 1.5e-29 133.7 221 45.2
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 2.0e-29 133.3 201 48.3
Oeu013283.1 Olea europaea HOM05D004032 ORTHO05D004462 2.0e-29 133.3 209 45.5
Oeu054187.1 Olea europaea HOM05D004032 ORTHO05D004462 2.0e-29 133.3 192 48.4
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 3.4e-29 132.5 186 47.3
MSTRG.23688 Avicennia marina HOM05D004032 ORTHO05D004462 4.4e-29 132.1 189 47.6
ClCG01G017390 Citrullus lanatus HOM05D004032 ORTHO05D004462 9.8e-29 131.0 207 45.4
Gohir.A10G090100 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.2e-28 129.8 185 51.4
Lalb_Chr05g0213571 Lupinus albus HOM05D004032 ORTHO05D004462 2.2e-28 129.8 221 43.9
Sed0022630 Sechium edule HOM05D004032 ORTHO05D004462 2.2e-28 129.8 193 47.2
CsaV3_6G043920 Cucumis sativus L. HOM05D004032 ORTHO05D004462 4.8e-28 128.6 207 45.4
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 3.1e-27 125.9 211 44.5
CSS0022714 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 4.1e-27 125.6 187 46.5
Cc07_g06860 Coffea canephora HOM05D004032 ORTHO05D004462 1.2e-26 124.0 226 44.7
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.0e-26 123.2 185 48.6
Oeu040591.1 Olea europaea HOM05D004032 ORTHO05D004462 2.7e-26 122.9 186 46.8
Oeu040592.1 Olea europaea HOM05D004032 ORTHO05D004462 2.7e-26 122.9 186 46.8
Rhsim08G0095200 Rhododendron simsii HOM05D004032 ORTHO05D004462 4.5e-26 122.1 190 43.7
Nn5g30527 Nelumbo nucifera HOM05D004032 ORTHO05D004462 5.9e-26 121.7 132 53.8
CAN.G1075.18 Capsicum annuum HOM05D004032 ORTHO05D004462 7.7e-26 121.3 226 42.5
Hma1.2p1_0942F.1_g239820 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 7.7e-26 121.3 222 45.0
Lalb_Chr16g0389141 Lupinus albus HOM05D004032 ORTHO05D004462 7.7e-26 121.3 208 44.7
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 1.7e-25 120.2 196 45.4
Lalb_Chr09g0334051 Lupinus albus HOM05D004032 ORTHO05D004462 2.3e-25 119.8 198 45.5
Actinidia21232 Actinidia chinensis HOM05D004032 ORTHO05D004462 3.8e-25 119.0 141 57.4
vmacro17992 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 3.8e-25 119.0 193 46.1
Glyma.15G185500 Glycine max HOM05D004032 ORTHO05D004462 5.0e-25 118.6 191 44.5
Nitab4.5_0000868g0010 Nicotiana tabacum HOM05D004032 ORTHO05D004462 8.6e-25 117.9 213 44.1
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 8.6e-25 117.9 212 42.9
Gorai.011G107600 Gossypium raimondii HOM05D004032 ORTHO05D004462 1.1e-24 117.5 186 48.4
CSS0026387 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 1.5e-24 117.1 194 44.3
Phvul.002G012400 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 1.5e-24 117.1 159 49.1
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 1.9e-24 116.7 210 45.2
Oeu031172.1 Olea europaea HOM05D004032 ORTHO05D004462 1.9e-24 116.7 211 42.2
SGA_v2.0_scaffold15G07422 Striga asiatica HOM05D004032 ORTHO05D004462 1.9e-24 116.7 190 44.2
Oeu031171.1 Olea europaea HOM05D004032 ORTHO05D004462 2.5e-24 116.3 211 42.2
Peaxi162Scf00264g00213 Petunia axillaris HOM05D004032 ORTHO05D004462 3.3e-24 115.9 235 40.0
Solyc02g092590.3 Solanum lycopersicum HOM05D004032 ORTHO05D004462 3.3e-24 115.9 220 42.3
Nn1g04611 Nelumbo nucifera HOM05D004032 ORTHO05D004462 4.2e-24 115.5 198 42.9
VMungo1215G3265 Vigna mungo HOM05D004032 ORTHO05D004462 7.2e-24 114.8 163 49.1
Sopen02g037160 Solanum pennellii HOM05D004032 ORTHO05D004462 3.6e-23 112.5 223 41.7
Lj2g0017817 Lotus japonicus HOM05D004032 ORTHO05D004462 8.0e-23 111.3 205 43.4
PGSC0003DMG400024938 Solanum tuberosum HOM05D004032 ORTHO05D004462 1.4e-22 110.5 214 43.0
Hund13934 Selenicereus undatus HOM05D004032 ORTHO05D004462 2.3e-22 109.8 220 38.6
TAR628G1371 Trochodendron aralioides HOM05D004032 ORTHO05D004462 2.3e-22 109.8 206 42.2
AL8G43930 Arabidopsis lyrata HOM05D004032 ORTHO05D004462 1.2e-21 107.5 187 40.6
Actinidia36441 Actinidia chinensis HOM05D004032 ORTHO05D004462 1.5e-21 107.1 192 42.7
Lsat_1_v5_gn_2_83781 Lactuca sativa HOM05D004032 ORTHO05D004462 2.0e-21 106.7 178 42.1
Hma1.2p1_0017F.1_g012150 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 4.4e-21 105.5 196 44.9
BcaB04g20056 Brassica carinata HOM05D004032 ORTHO05D004462 1.7e-20 103.6 196 41.8
ECA232G3054 Erigeron canadensis HOM05D004032 ORTHO05D004462 2.8e-20 102.8 191 40.3
Lj4A160G62 Lonicera japonica HOM05D004032 ORTHO05D004462 4.9e-20 102.1 139 48.2
THA.LOC104819252 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 2.4e-19 99.8 196 41.3
THA.LOC104821233 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 2.4e-19 99.8 125 50.4
THA.LOC104827558 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 3.1e-19 99.4 120 50.0
Actinidia11994 Actinidia chinensis HOM05D004032 ORTHO05D004462 4.1e-19 99.0 138 47.8
Ah.02g125580 Amaranthus hybridus HOM05D004032 ORTHO05D004462 5.4e-19 98.6 194 39.7
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 7.0e-19 98.2 197 39.1
AT5G67390 Arabidopsis thaliana HOM05D004032 ORTHO05D004462 2.0e-18 96.7 185 38.4
Lj7A88G34 Lonicera japonica HOM05D004032 ORTHO05D004462 2.0e-18 96.7 162 45.1
Carub.0008s2709 Capsella rubella HOM05D004032 ORTHO05D004462 2.7e-18 96.3 112 53.6
arahy.Tifrunner.gnm1.ann1.L7L2H1 Arachis hypogaea HOM05D004032 ORTHO05D004462 4.5e-18 95.5 211 38.4
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 5.9e-18 95.1 197 38.6
Aa31LG1G15950 Aethionema arabicum HOM05D004032 ORTHO05D004462 1.3e-17 94.0 198 41.4
CARHR280210 Cardamine hirsuta HOM05D004032 ORTHO05D004462 1.3e-17 94.0 111 51.4
arahy.Tifrunner.gnm1.ann1.7C4JLW Arachis hypogaea HOM05D004032 ORTHO05D004462 1.7e-17 93.6 211 38.4
C09p10940 Brassica napus HOM05D004032 ORTHO05D004462 6.6e-17 91.7 200 38.5
BcaC03g18375 Brassica carinata HOM05D004032 ORTHO05D004462 1.9e-16 90.1 196 37.8
C02p64510 Brassica napus HOM05D004032 ORTHO05D004462 1.9e-16 90.1 196 37.8
BolC2t12515H Brassica oleracea HOM05D004032 ORTHO05D004462 1.9e-16 90.1 196 37.8
HanXRQChr14g0441881 Helianthus annuus HOM05D004032 ORTHO05D004462 2.5e-16 89.7 168 40.5
Thhalv10005011m.g Eutrema salsugineum HOM05D004032 ORTHO05D004462 3.3e-16 89.4 189 38.1
BcaC04g23221 Brassica carinata HOM05D004032 ORTHO05D004462 4.3e-16 89.0 200 39.0
BolC9t53989H Brassica oleracea HOM05D004032 ORTHO05D004462 4.3e-16 89.0 200 39.0
SalBow6G2131 Salvia bowleyana HOM05D004032 ORTHO05D004462 4.3e-16 89.0 185 36.8
A02p44240 Brassica napus HOM05D004032 ORTHO05D004462 1.2e-15 87.4 185 35.1
BraA02t09348Z Brassica rapa HOM05D004032 ORTHO05D004462 1.2e-15 87.4 185 35.1
BraA09t36588Z Brassica rapa HOM05D004032 ORTHO05D004462 1.6e-15 87.0 200 38.0
ECA238G1032 Erigeron canadensis HOM05D004032 ORTHO05D004462 1.6e-15 87.0 162 40.1
A09p09370 Brassica napus HOM05D004032 ORTHO05D004462 2.1e-15 86.7 200 38.0
A07p16510 Brassica napus HOM05D004032 ORTHO05D004462 4.7e-15 85.5 196 36.7
BraA07t29375Z Brassica rapa HOM05D004032 ORTHO05D004462 4.7e-15 85.5 196 36.7
arahy.Tifrunner.gnm1.ann1.4VG7J5 Arachis hypogaea HOM05D004032 ORTHO05D004462 6.1e-15 85.1 226 35.4
BcaB02g09927 Brassica carinata HOM05D004032 ORTHO05D004462 6.1e-15 85.1 200 35.5
C07p24210 Brassica napus HOM05D004032 ORTHO05D004462 6.1e-15 85.1 196 36.7
BolC7t42948H Brassica oleracea HOM05D004032 ORTHO05D004462 6.1e-15 85.1 196 36.7
Sed0016234 Sechium edule HOM05D004032 ORTHO05D004462 8.0e-15 84.7 186 36.0
Sp2g29270 Schrenkiella parvula HOM05D004032 ORTHO05D004462 1.4e-14 84.0 189 35.4
CANSAT01G2482 Cannabis sativa HOM05D004032 ORTHO05D004462 1.8e-14 83.6 246 35.8
BcaC06g34822 Brassica carinata HOM05D004032 ORTHO05D004462 1.2e-13 80.9 196 35.7
Sc16g0000080 Simmondsia chinensis HOM05D004032 ORTHO05D004462 1.5e-13 80.5 166 42.2
Sed0024584 Sechium edule HOM05D004032 ORTHO05D004462 2.6e-13 79.7 188 35.6
SGA_v2.0_scaffold72G24091 Striga asiatica HOM05D004032 ORTHO05D004462 3.4e-13 79.3 186 33.9
Atru.chr3.192 Acer truncatum HOM05D004032 ORTHO05D004462 5.8e-13 78.6 223 35.4
Atru.chr3.163 Acer truncatum HOM05D004032 ORTHO05D004462 9.8e-13 77.8 216 35.6
MELO3C007617.2 Cucumis melo HOM05D004032 ORTHO05D004462 1.7e-12 77.0 187 36.9
Hund16386 Selenicereus undatus HOM05D004032 ORTHO05D004462 1.7e-12 77.0 211 35.1
ATR0030G044 Amborella trichopoda HOM05D004032 ORTHO05D004462 1.1e-11 74.3 217 33.2
CDE02G2979 Ceratophyllum demersum HOM05D000039 ORTHO05D000870 1.4e-11 73.9 160 38.1
Nitab4.5_0006689g0040 Nicotiana tabacum HOM05D004032 ORTHO05D004462 1.4e-11 73.9 58 67.2
EL10Ac6g15646 Beta vulgaris HOM05D004032 ORTHO05D004462 3.9e-09 65.9 242 31.8
Os03g0442900 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 6.6e-09 65.1 196 32.1
Os03g0604566 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 1.5e-08 63.9 86 45.3
Sed0005334 Sechium edule HOM05D004032 ORTHO05D004462 1.5e-08 63.9 160 38.1
Os03g0762100 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 2.5e-08 63.2 62 51.6
MELO3C020862.2 Cucumis melo HOM05D004032 ORTHO05D004462 4.3e-08 62.4 104 39.4
CsaV3_2G016520 Cucumis sativus L. HOM05D004032 ORTHO05D004462 9.5e-08 61.2 104 38.5
HPP92_007856 Vanilla planifolia HOM05D004032 ORTHO05D004462 2.8e-07 59.7 157 32.5
Zm00001eb264720 Zea mays HOM05D036073 ORTHO05D004462 2.8e-07 59.7 179 30.7
PSO170G3678 Papaver somniferum HOM05D007665 ORTHO05D008293 3.6e-07 59.3 70 47.1
PSO063G5967 Papaver somniferum HOM05D007665 ORTHO05D008293 4.7e-07 58.9 70 45.7
arahy.Tifrunner.gnm1.ann1.NPYP4Z Arachis hypogaea HOM05D004032 ORTHO05D004462 1.1e-06 57.8 235 29.4
Zm00001eb214280 Zea mays HOM05D004032 ORTHO05D004462 1.1e-06 57.8 42 64.3
ClCG02G012390 Citrullus lanatus HOM05D004032 ORTHO05D004462 1.4e-06 57.4 194 30.4
Zm00001eb058240 Zea mays HOM05D004032 ORTHO05D004462 1.4e-06 57.4 42 61.9
Thecc.09G178300 Theobroma cacao HOM05D007665 ORTHO05D008293 5.2e-06 55.5 220 28.2
Os12g0580600 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 6.8e-06 55.1 213 31.0
Dinv19563 Davidia involucrata HOM05D007665 ORTHO05D008293 8.9e-06 54.7 227 26.9


User provided reference genes

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