Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0107301 Rosa chinensis HOM05D005407 ORTHO05D006544 2.1e-168 595.9 363 100.0
FvH4_1g17130 Fragaria vesca HOM05D005407 ORTHO05D006544 5.6e-121 438.3 371 74.9
FAN23G2725 Fragaria x ananassa HOM05D005407 ORTHO05D006544 2.8e-120 436.0 371 74.7
FAN19G1545 Fragaria x ananassa HOM05D005407 ORTHO05D006544 3.6e-120 435.6 371 74.7
FAN26G3453 Fragaria x ananassa HOM05D005407 ORTHO05D006544 1.8e-119 433.3 371 74.4
FAN28G2899 Fragaria x ananassa HOM05D005407 ORTHO05D006544 2.1e-112 409.8 372 71.8
Prupe.6G224800 Prunus persica HOM05D005407 ORTHO05D006544 5.7e-41 172.6 407 41.3
MD15G1292600 Malus domestica HOM05D005407 ORTHO05D006544 1.6e-38 164.5 386 39.6
MD02G1181700 Malus domestica HOM05D005407 ORTHO05D006544 8.5e-37 158.7 387 44.7
Ciclev10025829m.g Citrus clementina HOM05D005407 ORTHO05D006544 4.7e-35 152.9 386 41.7
Duzib264G0474 Durio zibethinus HOM05D005407 ORTHO05D006544 3.1e-31 140.2 381 43.3
Duzib187G0216 Durio zibethinus HOM05D005407 ORTHO05D006544 1.2e-30 138.3 379 42.0
Cpa.g.sc6.55 Carica papaya HOM05D005407 ORTHO05D006544 4.5e-30 136.3 362 39.8
Nn5g30501 Nelumbo nucifera HOM05D005407 ORTHO05D006544 7.7e-30 135.6 373 35.7
Dinv26896 Davidia involucrata HOM05D005407 ORTHO05D006544 1.0e-29 135.2 371 35.3
CANSAT01G3084 Cannabis sativa HOM05D005407 ORTHO05D006544 1.7e-29 134.4 398 35.7
QL06p039956 Quercus lobata HOM05D005407 ORTHO05D006544 2.3e-29 134.0 368 43.2
Gohir.A11G217700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 3.3e-28 130.2 368 36.4
CiPaw.01G007800 Carya illinoinensis HOM05D005407 ORTHO05D006544 7.2e-28 129.0 367 35.7
CiPaw.02G004700 Carya illinoinensis HOM05D005407 ORTHO05D006544 2.8e-27 127.1 368 36.7
Gorai.007G220900 Gossypium raimondii HOM05D005407 ORTHO05D006544 3.6e-27 126.7 366 39.6
Potri.007G051800 Populus trichocarpa HOM05D005407 ORTHO05D006544 4.7e-27 126.3 381 35.7
Gohir.D11G205800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 6.1e-27 125.9 368 39.9
Gohir.A12G074500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 8.9e-26 122.1 368 35.3
GSVIVG01000158001 Vitis vinifera HOM05D005407 ORTHO05D006544 8.9e-26 122.1 361 38.0
Manes.13G114000 Manihot esculenta HOM05D005407 ORTHO05D006544 1.2e-25 121.7 362 43.6
Gorai.008G080000 Gossypium raimondii HOM05D005407 ORTHO05D006544 1.5e-25 121.3 368 35.1
Gohir.D12G072700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 2.6e-25 120.6 368 37.2
Sabra07G0045500 Salix brachista HOM05D005407 ORTHO05D006544 1.7e-24 117.9 375 37.3
Haze_15320 Corylus avellana HOM05D005407 ORTHO05D006544 2.8e-24 117.1 353 37.1
Thecc.01G067900 Theobroma cacao HOM05D005407 ORTHO05D006544 3.7e-24 116.7 374 39.0
Duzib147G1232 Durio zibethinus HOM05D005407 ORTHO05D006544 1.1e-23 115.2 370 37.8
Nn1g04631 Nelumbo nucifera HOM05D005407 ORTHO05D006544 2.4e-23 114.0 365 32.9
TAR628G1677 Trochodendron aralioides HOM05D005407 ORTHO05D006544 4.1e-23 113.2 359 36.2
Potri.005G145100 Populus trichocarpa HOM05D005407 ORTHO05D006544 1.2e-22 111.7 364 37.9
Gohir.A02G153500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 3.5e-22 110.2 366 33.9
Lj4g0004383 Lotus japonicus HOM05D005407 ORTHO05D006544 2.3e-21 107.5 364 34.1
Cfa004094 Carpinus fangiana HOM05D005407 ORTHO05D006544 1.1e-20 105.1 357 33.3
ClCG01G017290 Citrullus lanatus HOM05D005407 ORTHO05D006544 1.1e-20 105.1 370 33.2
MSTRG.23698 Avicennia marina HOM05D005407 ORTHO05D006544 1.5e-20 104.8 366 29.5
CsaV3_6G043820 Cucumis sativus L. HOM05D005407 ORTHO05D006544 1.9e-20 104.4 360 29.7
Nitab4.5_0003878g0070 Nicotiana tabacum HOM05D005407 ORTHO05D006544 1.9e-20 104.4 358 33.8
Nitab4.5_0007941g0010 Nicotiana tabacum HOM05D005407 ORTHO05D006544 9.5e-20 102.1 356 32.9
Actinidia21238 Actinidia chinensis HOM05D005407 ORTHO05D006544 1.6e-19 101.3 369 35.5
Glyma.05G103000 Glycine max HOM05D005407 ORTHO05D006544 2.8e-19 100.5 370 37.8
Sabra05G0114800 Salix brachista HOM05D005407 ORTHO05D006544 2.8e-19 100.5 313 35.5
Sabra05G0115900 Salix brachista HOM05D005407 ORTHO05D006544 2.8e-19 100.5 313 35.5
MELO3C007607.2 Cucumis melo HOM05D005407 ORTHO05D006544 3.6e-19 100.1 379 27.4
SGA_v2.0_scaffold15G07407 Striga asiatica HOM05D005407 ORTHO05D006544 4.7e-19 99.8 366 30.3
TWI09G0600 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 1.8e-18 97.8 354 35.6
Gohir.D03G026900 Gossypium hirsutum HOM05D005407 ORTHO05D006544 3.1e-18 97.1 367 31.9
PSO541G0358 Papaver somniferum HOM05D005407 ORTHO05D006544 3.1e-18 97.1 391 33.0
Gorai.003G028600 Gossypium raimondii HOM05D005407 ORTHO05D006544 4.0e-18 96.7 367 31.6
Solyc02g092720.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 5.2e-18 96.3 363 31.1
arahy.Tifrunner.gnm1.ann1.UV71K9 Arachis hypogaea HOM05D005407 ORTHO05D006544 6.8e-18 95.9 356 36.5
TWI53G1118 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 6.8e-18 95.9 376 32.7
Oeu040602.1 Olea europaea HOM05D005407 ORTHO05D006544 8.9e-18 95.5 352 37.8
Eucgr.I00726 Eucalyptus grandis HOM05D005407 ORTHO05D006544 1.5e-17 94.7 379 34.6
Psat4g083080 Pisum sativum HOM05D005407 ORTHO05D006544 1.5e-17 94.7 361 34.3
Sopen02g037270 Solanum pennellii HOM05D005407 ORTHO05D006544 1.5e-17 94.7 357 31.4
VMungo1011G0001 Vigna mungo HOM05D005407 ORTHO05D006544 1.5e-17 94.7 355 34.1
MSTRG.3457 Avicennia marina HOM05D005407 ORTHO05D006544 2.6e-17 94.0 360 30.6
DCAR_021471 Daucus carota HOM05D005407 ORTHO05D006544 4.4e-17 93.2 371 29.4
arahy.Tifrunner.gnm1.ann1.IRX7P6 Arachis hypogaea HOM05D005407 ORTHO05D006544 5.8e-17 92.8 357 36.7
MSTRG.2839 Avicennia marina HOM05D005407 ORTHO05D006544 1.3e-16 91.7 368 29.6
Gorai.011G107400 Gossypium raimondii HOM05D005407 ORTHO05D006544 1.3e-16 91.7 351 29.9
Glyma.17G164300 Glycine max HOM05D005407 ORTHO05D006544 1.7e-16 91.3 364 38.5
SalBow1G5175 Salvia bowleyana HOM05D005407 ORTHO05D006544 1.7e-16 91.3 365 31.2
Sed0008783 Sechium edule HOM05D005407 ORTHO05D006544 1.7e-16 91.3 358 29.3
TPR.G23890 Trifolium pratense HOM05D005407 ORTHO05D006544 2.9e-16 90.5 362 35.1
Aqoxy6G02765 Aquilegia oxysepala HOM05D005407 ORTHO05D006544 1.4e-15 88.2 219 39.3
Gohir.A10G090300 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.4e-15 88.2 351 28.8
Gohir.D10G097800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.4e-15 88.2 351 29.3
PSO675G4008 Papaver somniferum HOM05D005407 ORTHO05D006544 9.2e-15 85.5 384 33.6
CAN.G1075.9 Capsicum annuum HOM05D005407 ORTHO05D006544 2.0e-14 84.3 352 29.3
Phvul.002G013600 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 2.0e-14 84.3 380 35.3
C09p11100 Brassica napus HOM05D005407 ORTHO05D006544 7.8e-14 82.4 222 37.4
Carub.0008s2714 Capsella rubella HOM05D005407 ORTHO05D006544 7.8e-14 82.4 217 35.9
PGR004G2820 Punica granatum HOM05D005407 ORTHO05D006544 7.8e-14 82.4 372 30.9
BolC9t53999H Brassica oleracea HOM05D005407 ORTHO05D006544 1.0e-13 82.0 222 36.5
Atru.chr3.207 Acer truncatum HOM05D005407 ORTHO05D006544 1.7e-13 81.3 189 42.9
AL8G43980 Arabidopsis lyrata HOM05D005407 ORTHO05D006544 1.7e-13 81.3 212 35.8
PGSC0003DMG400024943 Solanum tuberosum HOM05D005407 ORTHO05D006544 1.7e-13 81.3 354 29.4
BcaC04g23209 Brassica carinata HOM05D005407 ORTHO05D006544 3.0e-13 80.5 213 37.1
Lsat_1_v5_gn_4_162000 Lactuca sativa HOM05D005407 ORTHO05D006544 3.9e-13 80.1 360 32.5
Dinv30062 Davidia involucrata HOM05D005407 ORTHO05D006544 6.6e-13 79.3 325 36.6
HanXRQChr12g0373231 Helianthus annuus HOM05D005407 ORTHO05D006544 8.6e-13 79.0 352 32.4
AT5G67350 Arabidopsis thaliana HOM05D005407 ORTHO05D006544 1.1e-12 78.6 209 34.4
CARHR280260 Cardamine hirsuta HOM05D005407 ORTHO05D006544 1.1e-12 78.6 215 34.0
Lj2g0008966 Lotus japonicus HOM05D005407 ORTHO05D006544 1.5e-12 78.2 367 30.0
Lsat_1_v5_gn_3_87740 Lactuca sativa HOM05D005407 ORTHO05D006544 1.9e-12 77.8 221 33.5
BcaB04g20064 Brassica carinata HOM05D005407 ORTHO05D006544 3.3e-12 77.0 209 35.4
BcaC04g19788 Brassica carinata HOM05D005407 ORTHO05D006544 4.3e-12 76.6 220 35.5
C09p51650 Brassica napus HOM05D005407 ORTHO05D006544 4.3e-12 76.6 220 35.5
BolC9t58026H Brassica oleracea HOM05D005407 ORTHO05D006544 4.3e-12 76.6 220 35.5
A09p09420 Brassica napus HOM05D005407 ORTHO05D006544 5.6e-12 76.3 213 36.2
BolC7t42952H Brassica oleracea HOM05D005407 ORTHO05D006544 5.6e-12 76.3 222 34.7
Glyma.01G191400 Glycine max HOM05D005407 ORTHO05D006544 9.5e-12 75.5 352 33.0
Glyma.11G050800 Glycine max HOM05D005407 ORTHO05D006544 9.5e-12 75.5 361 28.0
EL10Ac6g15663 Beta vulgaris HOM05D005407 ORTHO05D006544 1.2e-11 75.1 399 27.3
Manes.12G112400 Manihot esculenta HOM05D005407 ORTHO05D006544 1.6e-11 74.7 361 36.8
A07p16540 Brassica napus HOM05D005407 ORTHO05D006544 2.1e-11 74.3 220 34.5
BraA07t29378Z Brassica rapa HOM05D005407 ORTHO05D006544 2.1e-11 74.3 220 34.5
Migut.H00374 Erythranthe guttata HOM05D005407 ORTHO05D006544 2.1e-11 74.3 361 34.6
Sp2g29310 Schrenkiella parvula HOM05D005407 ORTHO05D006544 2.1e-11 74.3 215 34.0
THA.LOC104827519 Tarenaya hassleriana HOM05D005407 ORTHO05D006544 4.7e-11 73.2 225 33.8
BraA09t36591Z Brassica rapa HOM05D005407 ORTHO05D006544 6.2e-11 72.8 220 35.0
VMungo1215G1030 Vigna mungo HOM05D005407 ORTHO05D006544 6.2e-11 72.8 371 32.6
Actinidia32821 Actinidia chinensis HOM05D005407 ORTHO05D006544 8.0e-11 72.4 210 40.0
Cc07_g06740 Coffea canephora HOM05D005407 ORTHO05D006544 1.8e-10 71.2 357 30.3
Rhsim08G0096100 Rhododendron simsii HOM05D005407 ORTHO05D006544 4.0e-10 70.1 164 37.2
vmacro17985 Vaccinium macrocarpon HOM05D005407 ORTHO05D006544 5.2e-10 69.7 124 40.3
Thhalv10005384m.g Eutrema salsugineum HOM05D005407 ORTHO05D006544 2.6e-09 67.4 215 34.0
Aa31LG1G15900 Aethionema arabicum HOM05D005407 ORTHO05D006544 4.9e-08 63.2 179 33.0
CDE04G2817 Ceratophyllum demersum HOM05D005407 ORTHO05D006544 6.4e-08 62.8 213 31.5
Lalb_Chr16g0389101 Lupinus albus HOM05D005407 ORTHO05D006544 6.4e-08 62.8 339 30.1
Peaxi162Scf00365g00076 Petunia axillaris HOM05D005407 ORTHO05D006544 2.4e-07 60.8 376 30.9
HanXRQChr11g0322471 Helianthus annuus HOM05D005407 ORTHO05D006544 7.0e-07 59.3 123 35.0
SGA_v2.0_scaffold143G35780 Striga asiatica HOM05D005407 ORTHO05D006544 7.0e-07 59.3 221 30.8
CSS0012811 Camellia sinensis var. sinensis HOM05D005407 ORTHO05D006544 9.2e-07 58.9 219 37.4
CDE07G1425 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 1.2e-06 58.5 215 35.8
HPP92_007853 Vanilla planifolia HOM05D005407 ORTHO05D006544 1.6e-06 58.2 221 31.2
Medtr4g095320 Medicago truncatula HOM05D005407 ORTHO05D006544 2.1e-06 57.8 110 42.7
Peaxi162Scf00264g00321 Petunia axillaris HOM05D005407 ORTHO05D006544 2.7e-06 57.4 206 29.1
TAR376G1145 Trochodendron aralioides HOM05D005407 ORTHO05D006544 2.7e-06 57.4 43 62.8
Solyc03g150114.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 3.5e-06 57.0 151 33.1
Ah.02g125610 Amaranthus hybridus HOM05D005407 ORTHO05D006544 4.6e-06 56.6 184 34.2


User provided reference genes

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