Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0106421 Rosa chinensis HOM05D006417 ORTHO05D008113 1.1e-54 216.5 117 100.0
FAN02G0035 Fragaria x ananassa HOM05D006417 ORTHO05D008113 2.1e-21 105.9 65 92.3
Lj5A59T64 Lonicera japonica HOM05D006417 ORTHO05D008113 2.1e-21 105.9 65 92.3
RcHm_v2.0_Chr2g0138111 Rosa chinensis HOM05D006417 ORTHO05D008113 2.1e-21 105.9 65 92.3
FAN14G4157 Fragaria x ananassa HOM05D006417 ORTHO05D008113 2.8e-21 105.5 65 92.3
FAN26G3442 Fragaria x ananassa HOM05D006417 ORTHO05D008113 3.6e-21 105.1 65 95.4
FAN05G1876 Fragaria x ananassa HOM05D006417 ORTHO05D008113 4.7e-21 104.8 65 90.8
CsaV3_3G010850 Cucumis sativus L. HOM05D006417 ORTHO05D008113 6.2e-21 104.4 77 79.2
Prupe.3G069900 Prunus persica HOM05D006417 ORTHO05D008113 1.4e-20 103.2 65 89.2
TAR626G0232 Trochodendron aralioides HOM05D006417 ORTHO05D008113 1.4e-20 103.2 65 90.8
A08p31670 Brassica napus HOM05D006417 ORTHO05D008113 2.3e-20 102.4 69 84.1
FAN09G4522 Fragaria x ananassa HOM05D006417 ORTHO05D008113 2.3e-20 102.4 65 89.2
Aqoxy7G03790 Aquilegia oxysepala HOM05D006417 ORTHO05D008113 3.1e-20 102.1 65 89.2
Ciclev10026914m.g Citrus clementina HOM05D006417 ORTHO05D008113 3.1e-20 102.1 65 87.7
DCAR_023056 Daucus carota HOM05D006417 ORTHO05D008113 4.0e-20 101.7 62 93.5
Sed0026778 Sechium edule HOM05D006417 ORTHO05D008113 4.0e-20 101.7 65 87.7
Migut.D01026 Erythranthe guttata HOM05D006417 ORTHO05D008113 5.2e-20 101.3 65 87.7
BcaC07g38776 Brassica carinata HOM05D006417 ORTHO05D008113 6.8e-20 100.9 65 87.7
BcaC07g41515 Brassica carinata HOM05D006417 ORTHO05D008113 6.8e-20 100.9 65 87.7
A09p61510 Brassica napus HOM05D006417 ORTHO05D008113 6.8e-20 100.9 65 87.7
CARHR015790 Cardamine hirsuta HOM05D006417 ORTHO05D008113 6.8e-20 100.9 65 87.7
Hma1.2p1_2039F.1_g312170 Hydrangea macrophylla HOM05D006417 ORTHO05D008113 6.8e-20 100.9 63 88.9
Sp1g13580 Schrenkiella parvula HOM05D006417 ORTHO05D008113 6.8e-20 100.9 65 87.7
HPP92_003724 Vanilla planifolia HOM05D002497 ORTHO05D002697 6.8e-20 100.9 75 78.7
AL1G27360 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 8.9e-20 100.5 65 87.7
AT1G15270 Arabidopsis thaliana HOM05D006417 ORTHO05D008113 8.9e-20 100.5 65 87.7
Carub.0001s1503 Capsella rubella HOM05D006417 ORTHO05D008113 8.9e-20 100.5 65 87.7
ATR0724G030 Amborella trichopoda HOM05D006417 ORTHO05D008113 1.2e-19 100.1 65 86.2
BcaB03g13069 Brassica carinata HOM05D006417 ORTHO05D008113 1.2e-19 100.1 65 86.2
SalBow2G2995 Salvia bowleyana HOM05D006417 ORTHO05D008113 1.2e-19 100.1 65 86.2
Aa31LG4G200 Aethionema arabicum HOM05D006417 ORTHO05D008113 1.5e-19 99.8 65 86.2
ClCG05G003220 Citrullus lanatus HOM05D006417 ORTHO05D008113 1.5e-19 99.8 65 86.2
MBI06_g06678_MAGBIO Magnolia biondii HOM05D006417 ORTHO05D008113 1.5e-19 99.8 65 86.2
MD17G1194100 Malus domestica HOM05D006417 ORTHO05D008113 1.5e-19 99.8 65 87.7
Sed0004760 Sechium edule HOM05D006417 ORTHO05D008113 1.5e-19 99.8 65 86.2
C05p50430 Brassica napus HOM05D006417 ORTHO05D008113 2.6e-19 99.0 83 71.1
Aqoxy7G01686 Aquilegia oxysepala HOM05D006417 ORTHO05D008113 3.4e-19 98.6 65 86.2
BcaC05g25455 Brassica carinata HOM05D006417 ORTHO05D008113 3.4e-19 98.6 65 84.6
BcaC05g25459 Brassica carinata HOM05D006417 ORTHO05D008113 3.4e-19 98.6 65 84.6
Gohir.A09G082600 Gossypium hirsutum HOM05D006417 ORTHO05D008113 3.4e-19 98.6 65 84.6
ClCG02G009660 Citrullus lanatus HOM05D006417 ORTHO05D008113 4.4e-19 98.2 65 84.6
unitig_27.g25076 Utricularia gibba HOM05D006417 ORTHO05D008113 5.8e-19 97.8 65 86.2
Gohir.D09G082500 Gossypium hirsutum HOM05D006417 ORTHO05D008113 7.5e-19 97.4 65 83.1
Thecc.06G089800 Theobroma cacao HOM05D006417 ORTHO05D008113 7.5e-19 97.4 65 83.1
Aa31LG8G3190 Aethionema arabicum HOM05D006417 ORTHO05D008113 1.7e-18 96.3 65 83.1
CANSAT56G0242 Cannabis sativa HOM05D006417 ORTHO05D008113 2.2e-18 95.9 65 83.1
Thhalv10022282m.g Eutrema salsugineum HOM05D006417 ORTHO05D008113 2.2e-18 95.9 67 80.6
Glyma.08G206000 Glycine max HOM05D006417 ORTHO05D008113 2.2e-18 95.9 65 81.5
COL.COLO4_30395 Corchorus olitorius HOM05D006417 ORTHO05D008113 2.9e-18 95.5 65 86.2
Medtr4g012800 Medicago truncatula HOM05D006417 ORTHO05D008113 2.9e-18 95.5 65 81.5
Phvul.010G150000 Phaseolus vulgaris HOM05D006417 ORTHO05D008113 2.9e-18 95.5 65 81.5
Psat7g250440 Pisum sativum HOM05D006417 ORTHO05D008113 2.9e-18 95.5 65 81.5
Potri.001G181800 Populus trichocarpa HOM05D006417 ORTHO05D008113 2.9e-18 95.5 65 83.1
AT3G16040 Arabidopsis thaliana HOM05D006417 ORTHO05D008113 3.7e-18 95.1 65 81.5
FAN19G1924 Fragaria x ananassa HOM05D006417 ORTHO05D008113 3.7e-18 95.1 54 98.1
Glyma.07G005600 Glycine max HOM05D006417 ORTHO05D008113 3.7e-18 95.1 65 81.5
Lj3g0004039 Lotus japonicus HOM05D006417 ORTHO05D008113 3.7e-18 95.1 65 81.5
Lalb_Chr01g0012721 Lupinus albus HOM05D006417 ORTHO05D008113 3.7e-18 95.1 65 81.5
AL3G28690 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 4.9e-18 94.7 65 81.5
AL810U10020 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 4.9e-18 94.7 65 81.5
A06p11260 Brassica napus HOM05D006417 ORTHO05D008113 1.1e-17 93.6 62 85.5
C08p45090 Brassica napus HOM05D006417 ORTHO05D008113 1.1e-17 93.6 62 85.5
BolC8t52055H Brassica oleracea HOM05D006417 ORTHO05D008113 1.1e-17 93.6 62 85.5
BraA06t24306Z Brassica rapa HOM05D006417 ORTHO05D008113 1.1e-17 93.6 62 85.5
BraA09t41524Z Brassica rapa HOM05D006417 ORTHO05D008113 1.1e-17 93.6 62 85.5
FvH4_1g16510 Fragaria vesca HOM05D006417 ORTHO05D008113 1.1e-17 93.6 54 96.3
Carub.0003s1577 Capsella rubella HOM05D006417 ORTHO05D008113 1.4e-17 93.2 65 80.0
Sc12g0009320 Simmondsia chinensis HOM05D006417 ORTHO05D008113 1.4e-17 93.2 65 83.1
Migut.I00879 Erythranthe guttata HOM05D006417 ORTHO05D008113 1.9e-17 92.8 61 86.9
Hund06616 Selenicereus undatus HOM05D006417 ORTHO05D008113 1.9e-17 92.8 65 83.1
Atru.chr1.3302 Acer truncatum HOM05D006417 ORTHO05D008113 2.4e-17 92.4 65 78.5
C08p17070 Brassica napus HOM05D006417 ORTHO05D008113 2.4e-17 92.4 60 85.0
BolC8t49333H Brassica oleracea HOM05D006417 ORTHO05D008113 2.4e-17 92.4 60 85.0
Dinv38039 Davidia involucrata HOM05D006417 ORTHO05D008113 2.4e-17 92.4 65 86.2
Nn2g11755 Nelumbo nucifera HOM05D006417 ORTHO05D008113 3.2e-17 92.0 66 84.8
CARHR091200 Cardamine hirsuta HOM05D006417 ORTHO05D008113 4.1e-17 91.7 65 80.0
Manes.04G124600 Manihot esculenta HOM05D006417 ORTHO05D008113 4.1e-17 91.7 74 75.7
Oeu063955.1 Olea europaea HOM05D006417 ORTHO05D008113 4.1e-17 91.7 65 86.2
BolC5t30076H Brassica oleracea HOM05D006417 ORTHO05D008113 5.4e-17 91.3 62 82.3
Cpa.g.sc41.8 Carica papaya HOM05D006417 ORTHO05D008113 5.4e-17 91.3 71 77.5
CiPaw.01G238100 Carya illinoinensis HOM05D006417 ORTHO05D008113 5.4e-17 91.3 65 86.2
Haze_16401 Corylus avellana HOM05D006417 ORTHO05D008113 5.4e-17 91.3 65 84.6
CSS0028003 Camellia sinensis var. sinensis HOM05D006417 ORTHO05D008113 7.0e-17 90.9 59 86.4
Glyma.20G047300 Glycine max HOM05D006417 ORTHO05D008113 7.0e-17 90.9 65 78.5
AagrBONN_evm.TU.Sc2ySwM_117.2290 Anthoceros agrestis HOM05D006417 ORTHO05D008113 9.2e-17 90.5 96 62.5
HanXRQChr04g0096081 Helianthus annuus HOM05D006417 ORTHO05D008113 9.2e-17 90.5 65 84.6
Cc04_g03270 Coffea canephora HOM05D006417 ORTHO05D008113 1.2e-16 90.1 64 85.9
Gorai.006G098200 Gossypium raimondii HOM05D006417 ORTHO05D008113 1.2e-16 90.1 75 72.0
Eucgr.J02983 Eucalyptus grandis HOM05D006417 ORTHO05D008113 1.6e-16 89.7 60 86.7
Sp3g14390 Schrenkiella parvula HOM05D006417 ORTHO05D008113 1.6e-16 89.7 65 80.0
Lsat_1_v5_gn_5_130340 Lactuca sativa HOM05D006417 ORTHO05D008113 2.1e-16 89.4 65 83.1
Pp3c23_11500 Physcomitrium patens HOM05D006417 ORTHO05D008113 2.1e-16 89.4 64 79.7
Zm00001eb225700 Zea mays HOM05D006417 ORTHO05D008113 2.7e-16 89.0 63 87.3
CiPaw.02G150500 Carya illinoinensis HOM05D006417 ORTHO05D008113 3.5e-16 88.6 65 83.1
HanXRQChr12g0376701 Helianthus annuus HOM05D006417 ORTHO05D008113 3.5e-16 88.6 65 83.1
GSVIVG01017091001 Vitis vinifera HOM05D006417 ORTHO05D008113 3.5e-16 88.6 65 81.5
Peaxi162Scf00034g00611 Petunia axillaris HOM05D006417 ORTHO05D008113 7.8e-16 87.4 65 83.1
Pp3c24_10010 Physcomitrium patens HOM05D006417 ORTHO05D008113 7.8e-16 87.4 64 79.7
PGSC0003DMG400007579 Solanum tuberosum HOM05D006417 ORTHO05D008113 1.3e-15 86.7 65 83.1
DCAR_007563 Daucus carota HOM05D006417 ORTHO05D008113 1.7e-15 86.3 65 80.0
DCAR_026325 Daucus carota HOM05D006417 ORTHO05D008113 1.7e-15 86.3 65 80.0
Lj3g0012949 Lotus japonicus HOM05D006417 ORTHO05D008113 1.7e-15 86.3 66 78.8
SalBow2G0478 Salvia bowleyana HOM05D008308 ORTHO05D008113 1.7e-15 86.3 58 82.8
EL10Ac9g22008 Beta vulgaris HOM05D006417 ORTHO05D008113 2.3e-15 85.9 65 75.4
A05p33430 Brassica napus HOM05D006417 ORTHO05D008113 2.3e-15 85.9 63 77.8
Mapoly0091s0070 Marchantia polymorpha HOM05D006417 ORTHO05D008113 5.1e-15 84.7 62 77.4
Solyc12g043160.3 Solanum lycopersicum HOM05D006417 ORTHO05D008113 5.1e-15 84.7 65 81.5
BcaC05g28917 Brassica carinata HOM05D006417 ORTHO05D008113 1.1e-14 83.6 74 70.3
Thhalv10009202m.g Eutrema salsugineum HOM05D006417 ORTHO05D008113 1.1e-14 83.6 93 59.1
arahy.Tifrunner.gnm1.ann1.6441EL Arachis hypogaea HOM05D006417 ORTHO05D008113 3.3e-14 82.0 90 58.9
BcaNung06587 Brassica carinata HOM05D006417 ORTHO05D008113 3.3e-14 82.0 60 78.3
SGA_v2.0_scaffold37G14829 Striga asiatica HOM05D006417 ORTHO05D008113 3.3e-14 82.0 61 77.0
DCAR_002649 Daucus carota HOM05D006417 ORTHO05D008113 9.5e-14 80.5 60 80.0
Glyma.14G136351 Glycine max HOM05D006417 ORTHO05D008113 2.3e-12 75.9 60 71.7
CAN.G144.3 Capsicum annuum HOM05D006417 ORTHO05D008113 4.0e-12 75.1 60 80.0
ECA247G1523 Erigeron canadensis HOM05D001142 ORTHO05D004628 5.2e-12 74.7 55 81.8
ClCG11G012700 Citrullus lanatus HOM05D006417 ORTHO05D008113 2.9e-10 68.9 69 62.3
Lsat_1_v5_gn_1_35180 Lactuca sativa HOM05D006417 ORTHO05D008113 2.4e-09 65.9 54 74.1
Cre10.g438600 Chlamydomonas reinhardtii HOM05D006417 ORTHO05D008113 9.2e-09 63.9 63 65.1
ClCG09G002080 Citrullus lanatus HOM05D000001 ORTHO05D000003 4.6e-08 61.6 43 79.1
BraA08t35089Z Brassica rapa HOM05D006417 ORTHO05D008113 7.8e-08 60.8 42 81.0
Lalb_Chr04g0262751 Lupinus albus HOM05D006417 ORTHO05D008113 1.0e-07 60.5 40 82.5
Nitab4.5_0004241g0020 Nicotiana tabacum HOM05D006417 ORTHO05D008113 1.7e-07 59.7 60 68.3
Nitab4.5_0002859g0060 Nicotiana tabacum HOM05D006417 ORTHO05D008113 6.6e-07 57.8 65 63.1


User provided reference genes

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