Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0106381 Rosa chinensis HOM05D000940 ORTHO05D036724 1.8e-50 202.2 98 100.0
FvH4_4g31730 Fragaria vesca HOM05D000940 ORTHO05D000782 1.8e-13 79.3 47 80.9
FAN07G0018 Fragaria x ananassa HOM05D000940 ORTHO05D000782 4.0e-13 78.2 47 80.9
RcHm_v2.0_Chr4g0440331 Rosa chinensis HOM05D000940 ORTHO05D000782 4.0e-13 78.2 47 78.7
FAN17G1268 Fragaria x ananassa HOM05D000940 ORTHO05D000782 8.8e-13 77.0 47 78.7
FAN12G2640 Fragaria x ananassa HOM05D000940 ORTHO05D000782 1.2e-12 76.6 47 78.7
Prupe.1G269800 Prunus persica HOM05D000940 ORTHO05D000782 3.4e-12 75.1 48 72.9
FAN22G1764 Fragaria x ananassa HOM05D000940 ORTHO05D000782 1.3e-11 73.2 47 76.6
Hma1.2p1_2815F.1_g328930 Hydrangea macrophylla HOM05D000940 ORTHO05D000782 3.7e-11 71.6 75 48.0
Duzib268G1236 Durio zibethinus HOM05D000940 ORTHO05D000782 1.1e-10 70.1 49 65.3
Potri.001G147700 Populus trichocarpa HOM05D000940 ORTHO05D000782 1.1e-10 70.1 50 60.0
Dinv34212 Davidia involucrata HOM05D000940 ORTHO05D000782 1.8e-10 69.3 45 66.7
Eucgr.G02533 Eucalyptus grandis HOM05D000940 ORTHO05D000782 2.4e-10 68.9 38 81.6
Medtr5g038600 Medicago truncatula HOM05D000940 ORTHO05D000782 2.4e-10 68.9 43 69.8
Oeu001588.1 Olea europaea HOM05D000940 ORTHO05D000782 2.4e-10 68.9 40 75.0
Lj6A793T93 Lonicera japonica HOM05D000940 ORTHO05D000782 3.1e-10 68.6 56 60.7
TPR.G13769 Trifolium pratense HOM05D000940 ORTHO05D000782 5.4e-10 67.8 55 56.4
MD16G1077300 Malus domestica HOM05D000940 ORTHO05D000782 7.0e-10 67.4 40 75.0
SalBow2G1549 Salvia bowleyana HOM05D000940 ORTHO05D000782 7.0e-10 67.4 40 72.5
SalBow2G2500 Salvia bowleyana HOM05D000940 ORTHO05D000782 7.0e-10 67.4 40 72.5
SGA_v2.0_scaffold164G38160 Striga asiatica HOM05D000940 ORTHO05D000782 7.0e-10 67.4 49 63.3
CSS0023447 Camellia sinensis var. sinensis HOM05D000940 ORTHO05D000782 1.2e-09 66.6 59 55.9
Sc04g0008380 Simmondsia chinensis HOM05D000940 ORTHO05D000782 1.6e-09 66.2 38 73.7
Manes.05G098100 Manihot esculenta HOM05D000940 ORTHO05D000782 2.0e-09 65.9 49 61.2
Cfa009016 Carpinus fangiana HOM05D000940 ORTHO05D000782 2.7e-09 65.5 47 61.7
CiPaw.05G138600 Carya illinoinensis HOM05D000940 ORTHO05D000782 2.7e-09 65.5 50 56.0
CiPaw.06G081900 Carya illinoinensis HOM05D000940 ORTHO05D000782 2.7e-09 65.5 49 63.3
Nitab4.5_0000879g0030 Nicotiana tabacum HOM05D000940 ORTHO05D000782 2.7e-09 65.5 38 76.3
Nitab4.5_0006585g0030 Nicotiana tabacum HOM05D000940 ORTHO05D000782 2.7e-09 65.5 38 76.3
Medtr4g117820 Medicago truncatula HOM05D000940 ORTHO05D036724 3.5e-09 65.1 40 70.0
Sabra01G0116100 Salix brachista HOM05D000940 ORTHO05D000782 3.5e-09 65.1 46 63.0
Sabra01G0117400 Salix brachista HOM05D000940 ORTHO05D000782 3.5e-09 65.1 46 63.0
Glyma.01G043700 Glycine max HOM05D000940 ORTHO05D000782 4.5e-09 64.7 81 43.2
Glyma.02G019800 Glycine max HOM05D000940 ORTHO05D000782 4.5e-09 64.7 81 43.2
TPR.G29660 Trifolium pratense HOM05D000940 ORTHO05D036724 4.5e-09 64.7 62 54.8
Actinidia31189 Actinidia chinensis HOM05D000940 ORTHO05D000782 5.9e-09 64.3 40 67.5
Lsat_1_v5_gn_4_8760 Lactuca sativa HOM05D000940 ORTHO05D000782 5.9e-09 64.3 39 74.4
Peaxi162Scf00209g00220 Petunia axillaris HOM05D000940 ORTHO05D000782 5.9e-09 64.3 34 82.4
Phvul.002G089300 Phaseolus vulgaris HOM05D000940 ORTHO05D000782 5.9e-09 64.3 58 53.4
Rhsim12G0130900 Rhododendron simsii HOM05D000940 ORTHO05D000782 5.9e-09 64.3 40 67.5
Ca_05407_v3 Cicer arietinum L. HOM05D000940 ORTHO05D000782 7.7e-09 63.9 72 47.2
Migut.L01330 Erythranthe guttata HOM05D000940 ORTHO05D000782 7.7e-09 63.9 40 67.5
GSVIVG01020055001 Vitis vinifera HOM05D000940 ORTHO05D000782 7.7e-09 63.9 40 72.5
Atru.chr11.1903 Acer truncatum HOM05D000940 ORTHO05D000782 1.0e-08 63.5 40 70.0
Haze_12049 Corylus avellana HOM05D000940 ORTHO05D000782 1.0e-08 63.5 48 62.5
Lalb_Chr16g0392591 Lupinus albus HOM05D000940 ORTHO05D000782 1.0e-08 63.5 40 70.0
vmacro16335 Vaccinium macrocarpon HOM05D000940 ORTHO05D000782 1.0e-08 63.5 40 67.5
CSS0002457 Camellia sinensis var. sinensis HOM05D000940 ORTHO05D000782 1.3e-08 63.2 40 70.0
CSS0010614 Camellia sinensis var. sinensis HOM05D000940 ORTHO05D000782 1.3e-08 63.2 59 52.5
Ciclev10030797m.g Citrus clementina HOM05D000940 ORTHO05D000782 1.3e-08 63.2 73 43.8
Psat4g133280 Pisum sativum HOM05D000940 ORTHO05D000782 1.3e-08 63.2 48 64.6
Thecc.02G353400 Theobroma cacao HOM05D000940 ORTHO05D000782 1.3e-08 63.2 48 62.5
ATR1120G020 Amborella trichopoda HOM05D000940 ORTHO05D000782 1.7e-08 62.8 73 46.6
QL03p065408 Quercus lobata HOM05D000940 ORTHO05D000782 1.7e-08 62.8 48 58.3
EL10Ac6g13165 Beta vulgaris HOM05D000940 ORTHO05D000782 2.2e-08 62.4 39 69.2
Medtr8g468500 Medicago truncatula HOM05D000940 ORTHO05D000782 2.2e-08 62.4 40 70.0
MSTRG.7820 Avicennia marina HOM05D000940 ORTHO05D000782 2.9e-08 62.0 48 58.3
MD13G1077200 Malus domestica HOM05D000940 ORTHO05D000782 2.9e-08 62.0 38 71.1
Aqoxy3G00720 Aquilegia oxysepala HOM05D000940 ORTHO05D000782 3.8e-08 61.6 52 53.8
Cc08_g07270 Coffea canephora HOM05D000940 ORTHO05D000782 3.8e-08 61.6 40 67.5
Dinv24969 Davidia involucrata HOM05D000940 ORTHO05D000782 3.8e-08 61.6 40 67.5
HanXRQChr14g0429311 Helianthus annuus HOM05D000940 ORTHO05D000782 3.8e-08 61.6 58 55.2
MBI01_g12911_MAGBIO Magnolia biondii HOM05D000940 ORTHO05D000782 3.8e-08 61.6 36 77.8
Psat2g123320 Pisum sativum HOM05D000940 ORTHO05D000782 5.0e-08 61.2 47 55.3
TAR629G2216 Trochodendron aralioides HOM05D000940 ORTHO05D000782 5.0e-08 61.2 40 67.5
Aqoxy3G03309 Aquilegia oxysepala HOM05D000940 ORTHO05D000782 6.5e-08 60.8 51 51.0
arahy.Tifrunner.gnm1.ann1.24MCIL Arachis hypogaea HOM05D000940 ORTHO05D000782 6.5e-08 60.8 60 55.0
arahy.Tifrunner.gnm1.ann1.58XCKB Arachis hypogaea HOM05D000940 ORTHO05D000782 6.5e-08 60.8 60 55.0
MSTRG.678 Avicennia marina HOM05D000940 ORTHO05D000782 6.5e-08 60.8 40 67.5
ECA234G3926 Erigeron canadensis HOM05D000940 ORTHO05D000782 6.5e-08 60.8 39 71.8
Solyc05g007120.4 Solanum lycopersicum HOM05D000940 ORTHO05D000782 6.5e-08 60.8 38 68.4
Sopen05g003080 Solanum pennellii HOM05D000940 ORTHO05D000782 6.5e-08 60.8 38 68.4
PGSC0003DMG400017645 Solanum tuberosum HOM05D000940 ORTHO05D000782 6.5e-08 60.8 38 68.4
Ca_04751_v3 Cicer arietinum L. HOM05D000940 ORTHO05D000782 8.5e-08 60.5 36 75.0
Duzib251G0482 Durio zibethinus HOM05D000940 ORTHO05D000782 8.5e-08 60.5 44 63.6
TWI18G0025 Tripterygium wilfordii HOM05D000940 ORTHO05D000782 8.5e-08 60.5 44 65.9
CAN.G279.18 Capsicum annuum HOM05D000940 ORTHO05D000782 1.1e-07 60.1 38 68.4
DCAR_031046 Daucus carota HOM05D000940 ORTHO05D000782 1.1e-07 60.1 57 52.6
TPR.G33249 Trifolium pratense HOM05D000940 ORTHO05D000782 1.1e-07 60.1 40 67.5
Oeu028698.1 Olea europaea HOM05D000940 ORTHO05D000782 1.5e-07 59.7 33 78.8
Phvul.003G068400 Phaseolus vulgaris HOM05D000940 ORTHO05D000782 1.5e-07 59.7 40 67.5
CSS0045696 Camellia sinensis var. sinensis HOM05D000940 ORTHO05D000782 1.9e-07 59.3 60 50.0
Cpa.g.sc183.21 Carica papaya HOM05D000940 ORTHO05D000782 2.5e-07 58.9 48 56.2
VMungo0251G1587 Vigna mungo HOM05D000940 ORTHO05D000782 2.5e-07 58.9 40 67.5
COL.COLO4_23033 Corchorus olitorius HOM05D000940 ORTHO05D000782 3.2e-07 58.5 40 65.0
Lj4g0011521 Lotus japonicus HOM05D000940 ORTHO05D000782 3.2e-07 58.5 45 57.8
PGR119G0763 Punica granatum HOM05D000940 ORTHO05D000782 3.2e-07 58.5 49 57.1
AUR62005740 Chenopodium quinoa HOM05D000940 ORTHO05D000782 4.2e-07 58.2 52 46.2
Glyma.18G124500 Glycine max HOM05D000940 ORTHO05D000782 4.2e-07 58.2 73 39.7
Nn3g17152 Nelumbo nucifera HOM05D000940 ORTHO05D000782 4.2e-07 58.2 36 72.2
Glyma.08G297400 Glycine max HOM05D000940 ORTHO05D000782 5.5e-07 57.8 40 65.0
THA.LOC104801787 Tarenaya hassleriana HOM05D000940 ORTHO05D000782 5.5e-07 57.8 39 61.5
Ah.02g131330 Amaranthus hybridus HOM05D000940 ORTHO05D000782 7.2e-07 57.4 38 65.8
HPP92_005180 Vanilla planifolia HOM05D000940 ORTHO05D000782 7.2e-07 57.4 74 36.5
AT1G14390 Arabidopsis thaliana HOM05D000940 ORTHO05D000782 9.4e-07 57.0 69 42.0
arahy.Tifrunner.gnm1.ann1.Z1V611 Arachis hypogaea HOM05D000940 ORTHO05D000782 1.6e-06 56.2 74 43.2
Gohir.A03G098700 Gossypium hirsutum HOM05D000940 ORTHO05D000782 1.6e-06 56.2 40 62.5
Gohir.D02G114600 Gossypium hirsutum HOM05D000940 ORTHO05D000782 1.6e-06 56.2 40 62.5
Gorai.005G139400 Gossypium raimondii HOM05D000940 ORTHO05D000782 1.6e-06 56.2 40 62.5
DCAR_027395 Daucus carota HOM05D000046 ORTHO05D000782 2.1e-06 55.8 37 67.6
Hund25263 Selenicereus undatus HOM05D000940 ORTHO05D000782 2.1e-06 55.8 48 52.1
Aa31LG1G660 Aethionema arabicum HOM05D000940 ORTHO05D000782 2.7e-06 55.5 39 59.0
Nn4g23076 Nelumbo nucifera HOM05D000940 ORTHO05D000782 2.7e-06 55.5 49 51.0
BcaC06g31217 Brassica carinata HOM05D000940 ORTHO05D000782 3.6e-06 55.1 39 56.4
AUR62028821 Chenopodium quinoa HOM05D000940 ORTHO05D000782 3.6e-06 55.1 39 61.5
ClCG05G024490 Citrullus lanatus HOM05D000940 ORTHO05D000782 3.6e-06 55.1 33 75.8
MELO3C012075.2 Cucumis melo HOM05D000940 ORTHO05D000782 3.6e-06 55.1 33 72.7
Medtr6g027720 Medicago truncatula HOM05D000940 ORTHO05D000782 3.6e-06 55.1 40 57.5
Sp2g13880 Schrenkiella parvula HOM05D000940 ORTHO05D000782 3.6e-06 55.1 59 40.7
AL1G26280 Arabidopsis lyrata HOM05D000940 ORTHO05D000782 4.7e-06 54.7 39 59.0
ECA233G3322 Erigeron canadensis HOM05D000940 ORTHO05D000782 4.7e-06 54.7 40 55.0
Thhalv10006929m.g Eutrema salsugineum HOM05D000940 ORTHO05D000782 4.7e-06 54.7 54 46.3
PSO591G0331 Papaver somniferum HOM05D000940 ORTHO05D000782 4.7e-06 54.7 36 63.9
PSO832G2167 Papaver somniferum HOM05D000940 ORTHO05D000782 4.7e-06 54.7 36 63.9
Lalb_Chr21g0317281 Lupinus albus HOM05D000940 ORTHO05D000782 6.1e-06 54.3 80 36.2
Aa31LG2G7490 Aethionema arabicum HOM05D000940 ORTHO05D000782 8.0e-06 53.9 39 59.0
CsaV3_5G032460 Cucumis sativus L. HOM05D000940 ORTHO05D000782 8.0e-06 53.9 30 80.0
Potri.019G039000 Populus trichocarpa HOM05D000940 ORTHO05D000782 8.0e-06 53.9 40 60.0


User provided reference genes

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