Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0106191 Rosa chinensis HOM05D004652 ORTHO05D005634 2.4e-198 695.3 345 100.0
FvH4_1g16330 Fragaria vesca HOM05D004652 ORTHO05D005634 3.9e-188 661.4 345 95.4
FAN23G0595 Fragaria x ananassa HOM05D004652 ORTHO05D005634 6.6e-188 660.6 345 95.1
FAN19G0057 Fragaria x ananassa HOM05D004652 ORTHO05D005634 1.5e-187 659.4 345 95.1
FAN28G0632 Fragaria x ananassa HOM05D004652 ORTHO05D005634 1.5e-184 649.4 349 93.1
MD02G1175800 Malus domestica HOM05D004652 ORTHO05D005634 1.2e-165 586.6 345 84.3
CiPaw.01G015500 Carya illinoinensis HOM05D004652 ORTHO05D005634 9.6e-163 577.0 345 79.4
CiPaw.01G015800 Carya illinoinensis HOM05D004652 ORTHO05D005634 1.6e-162 576.2 345 80.0
Dinv30009 Davidia involucrata HOM05D004652 ORTHO05D005634 1.6e-162 576.2 345 82.6
CANSAT25G2702 Cannabis sativa HOM05D004652 ORTHO05D005634 1.3e-159 566.6 345 78.3
QL06p040720 Quercus lobata HOM05D004652 ORTHO05D005634 2.2e-159 565.8 344 78.5
Haze_15373 Corylus avellana HOM05D004652 ORTHO05D005634 5.6e-155 551.2 375 71.5
GSVIVG01022087001 Vitis vinifera HOM05D004652 ORTHO05D005634 9.6e-155 550.4 346 77.5
Actinidia36476 Actinidia chinensis HOM05D004652 ORTHO05D005634 9.0e-153 543.9 345 76.5
CSS0025726 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 1.5e-152 543.1 345 75.9
Nn5g30355 Nelumbo nucifera HOM05D004652 ORTHO05D005634 4.5e-152 541.6 343 76.1
Glyma.11G054000 Glycine max HOM05D004652 ORTHO05D005634 6.4e-151 537.7 348 77.3
CsaV3_2G016420 Cucumis sativus L. HOM05D004652 ORTHO05D005634 3.2e-150 535.4 345 75.4
MELO3C020851.2 Cucumis melo HOM05D004652 ORTHO05D005634 9.3e-150 533.9 345 75.1
Medtr7g104350 Medicago truncatula HOM05D004652 ORTHO05D005634 2.7e-149 532.3 346 76.9
Peaxi162Scf00549g00023 Petunia axillaris HOM05D004652 ORTHO05D005634 2.7e-149 532.3 345 74.8
Phvul.002G017100 Phaseolus vulgaris HOM05D004652 ORTHO05D005634 6.0e-149 531.2 349 75.4
Glyma.01G188100 Glycine max HOM05D004652 ORTHO05D005634 1.8e-148 529.6 348 75.9
Actinidia12037 Actinidia chinensis HOM05D004652 ORTHO05D005634 3.9e-148 528.5 374 71.7
TPR.G19549 Trifolium pratense HOM05D004652 ORTHO05D005634 3.9e-148 528.5 341 76.0
Psat3g034240 Pisum sativum HOM05D004652 ORTHO05D005634 6.7e-148 527.7 346 76.3
arahy.Tifrunner.gnm1.ann1.8Y90C0 Arachis hypogaea HOM05D004652 ORTHO05D005634 1.1e-147 526.9 354 73.2
arahy.Tifrunner.gnm1.ann1.EFTP1R Arachis hypogaea HOM05D004652 ORTHO05D005634 1.9e-147 526.2 354 73.4
Lj2g0023089 Lotus japonicus HOM05D004652 ORTHO05D005634 2.5e-147 525.8 349 75.1
VMungo1215G2858 Vigna mungo HOM05D004652 ORTHO05D005634 2.5e-147 525.8 348 73.9
Hma1.2p1_0670F.1_g200440 Hydrangea macrophylla HOM05D004652 ORTHO05D005634 7.4e-147 524.2 349 74.5
Nitab4.5_0001221g0030 Nicotiana tabacum HOM05D004652 ORTHO05D005634 9.6e-147 523.9 345 73.9
CSS0033708 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 1.3e-146 523.5 330 76.4
Lalb_Chr05g0213341 Lupinus albus HOM05D004652 ORTHO05D005634 2.8e-146 522.3 345 73.9
Solyc02g093170.4 Solanum lycopersicum HOM05D004652 ORTHO05D005634 1.8e-145 519.6 345 71.6
Sopen02g037740 Solanum pennellii HOM05D004652 ORTHO05D005634 2.4e-145 519.2 344 71.5
PGSC0003DMG400004028 Solanum tuberosum HOM05D004652 ORTHO05D005634 6.9e-145 517.7 346 71.7
Prupe.6G231900 Prunus persica HOM05D004652 ORTHO05D005634 1.2e-144 516.9 286 87.8
Migut.H00415 Erythranthe guttata HOM05D004652 ORTHO05D005634 2.0e-144 516.2 341 73.3
PGR102G1991 Punica granatum HOM05D004652 ORTHO05D005634 2.6e-144 515.8 347 72.3
MSTRG.23735 Avicennia marina HOM05D004652 ORTHO05D005634 3.4e-144 515.4 345 73.3
Sed0013827 Sechium edule HOM05D004652 ORTHO05D005634 9.9e-144 513.8 348 73.3
Ciclev10025986m.g Citrus clementina HOM05D004652 ORTHO05D005634 1.3e-143 513.5 350 74.3
Lj7A73G20 Lonicera japonica HOM05D004652 ORTHO05D005634 1.7e-143 513.1 306 80.1
Nitab4.5_0002765g0060 Nicotiana tabacum HOM05D004652 ORTHO05D005634 2.9e-143 512.3 349 72.2
TWI09G0879 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 2.9e-143 512.3 341 74.8
Potri.007G045900 Populus trichocarpa HOM05D004652 ORTHO05D005634 4.9e-143 511.5 346 72.0
Manes.13G121100 Manihot esculenta HOM05D004652 ORTHO05D005634 1.4e-142 510.0 351 72.9
Cc07_g06170 Coffea canephora HOM05D004652 ORTHO05D005634 2.7e-141 505.8 345 71.3
GSVIVG01031712001 Vitis vinifera HOM05D004652 ORTHO05D005634 4.6e-141 505.0 345 73.6
Duzib147G0331 Durio zibethinus HOM05D004652 ORTHO05D005634 6.0e-141 504.6 340 72.6
Lsat_1_v5_gn_4_165120 Lactuca sativa HOM05D004652 ORTHO05D005634 1.0e-140 503.8 345 71.6
HanXRQChr15g0490761 Helianthus annuus HOM05D004652 ORTHO05D005634 1.8e-140 503.1 349 71.3
Cpa.g.sc55.119 Carica papaya HOM05D004652 ORTHO05D005634 1.5e-139 500.0 343 72.3
Gorai.007G215700 Gossypium raimondii HOM05D004652 ORTHO05D005634 1.4e-137 493.4 345 71.9
PSO675G7477 Papaver somniferum HOM05D004652 ORTHO05D005634 1.4e-137 493.4 361 65.4
unitig_736.g22389 Utricularia gibba HOM05D004652 ORTHO05D005634 1.4e-137 493.4 346 68.2
Gorai.013G045700 Gossypium raimondii HOM05D004652 ORTHO05D005634 1.8e-137 493.0 340 72.4
Thecc.02G103600 Theobroma cacao HOM05D004652 ORTHO05D005634 1.8e-137 493.0 340 73.8
ECA232G0198 Erigeron canadensis HOM05D004652 ORTHO05D005634 4.0e-137 491.9 316 75.3
Gohir.A13G042200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 5.3e-137 491.5 340 72.4
Potri.009G099600 Populus trichocarpa HOM05D004652 ORTHO05D005634 5.3e-137 491.5 346 71.1
Atru.chr5.2643 Acer truncatum HOM05D004652 ORTHO05D005634 6.9e-137 491.1 346 71.1
Atru.chr5.2649 Acer truncatum HOM05D004652 ORTHO05D005634 6.9e-137 491.1 346 71.1
DCAR_010876 Daucus carota HOM05D004652 ORTHO05D005634 1.5e-136 490.0 353 69.7
Duzib132G1249 Durio zibethinus HOM05D004652 ORTHO05D005634 1.5e-136 490.0 346 71.4
Thecc.01G060000 Theobroma cacao HOM05D004652 ORTHO05D005634 2.0e-136 489.6 304 78.0
TWI31G1310 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 4.5e-136 488.4 306 76.5
Ciclev10030127m.g Citrus clementina HOM05D004652 ORTHO05D005634 2.2e-135 486.1 347 69.5
Sabra09G0075900 Salix brachista HOM05D004652 ORTHO05D005634 6.5e-135 484.6 346 70.2
Aqoxy6G01262 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 5.5e-134 481.5 347 70.3
Sabra07G0041100 Salix brachista HOM05D004652 ORTHO05D005634 9.3e-134 480.7 380 64.2
Eucgr.I01131 Eucalyptus grandis HOM05D004652 ORTHO05D005634 3.9e-132 475.3 348 68.7
Gohir.A11G195100 Gossypium hirsutum HOM05D004652 ORTHO05D005634 1.1e-131 473.8 305 75.1
AUR62013234 Chenopodium quinoa HOM05D004652 ORTHO05D005634 1.5e-131 473.4 344 69.2
Sc07g0000730 Simmondsia chinensis HOM05D004652 ORTHO05D005634 2.5e-131 472.6 340 67.9
Oeu049898.1 Olea europaea HOM05D004652 ORTHO05D005634 7.4e-131 471.1 299 77.3
vmacro05311 Vaccinium macrocarpon HOM05D004652 ORTHO05D005634 1.3e-130 470.3 346 68.2
Atru.chr3.293 Acer truncatum HOM05D004652 ORTHO05D005634 1.4e-129 466.8 351 67.8
Rhsim10G0114700 Rhododendron simsii HOM05D004652 ORTHO05D005634 1.9e-126 456.4 310 72.9
THA.LOC104807263 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 3.2e-126 455.7 316 70.3
Thhalv10025679m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 4.2e-126 455.3 330 69.7
EL10Ac9g22324 Beta vulgaris HOM05D004652 ORTHO05D005634 7.2e-126 454.5 350 65.7
THA.LOC104807591 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 6.1e-125 451.4 343 67.1
Sp7g31800 Schrenkiella parvula HOM05D004652 ORTHO05D005634 1.0e-124 450.7 330 68.8
AT4G34090 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 2.3e-124 449.5 332 68.7
ATR0724G029 Amborella trichopoda HOM05D004652 ORTHO05D005634 3.0e-124 449.1 306 70.6
Carub.0007s0633 Capsella rubella HOM05D004652 ORTHO05D005634 3.0e-124 449.1 329 67.8
AL7G17310 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 8.7e-124 447.6 331 68.6
CARHR242200 Cardamine hirsuta HOM05D004652 ORTHO05D005634 8.7e-124 447.6 332 67.8
SGA_v2.0_scaffold143G35809 Striga asiatica HOM05D004652 ORTHO05D005634 1.1e-123 447.2 279 76.3
Hund13540 Selenicereus undatus HOM05D004652 ORTHO05D005634 1.9e-123 446.4 340 63.5
CDE02G2369 Ceratophyllum demersum HOM05D004652 ORTHO05D005634 2.5e-123 446.0 306 70.6
BcaNung03359 Brassica carinata HOM05D004652 ORTHO05D005634 3.3e-123 445.7 330 67.6
Ah.01g017900 Amaranthus hybridus HOM05D004652 ORTHO05D005634 3.1e-121 439.1 286 73.1
Gohir.D11G201200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 2.0e-120 436.4 285 74.4
PSO541G5706 Papaver somniferum HOM05D004652 ORTHO05D005634 3.4e-120 435.6 361 60.4
Aa31LG2G16510 Aethionema arabicum HOM05D002471 ORTHO05D003712 7.7e-120 434.5 313 68.4
HPP92_024094 Vanilla planifolia HOM05D004652 ORTHO05D005634 1.7e-119 433.3 352 62.8
AT2G23370 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 2.2e-119 433.0 343 63.8
AUR62010252 Chenopodium quinoa HOM05D004652 ORTHO05D005634 2.2e-119 433.0 279 74.6
BolC8t51563H Brassica oleracea HOM05D004652 ORTHO05D005634 3.8e-119 432.2 345 64.1
Os03g0109700 Oryza sativa ssp. japonica HOM05D004652 ORTHO05D005634 6.5e-119 431.4 342 61.7
SGA_v2.0_scaffold34G13618 Striga asiatica HOM05D004652 ORTHO05D005634 1.1e-118 430.6 283 74.6
AL4G13280 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 1.4e-118 430.3 343 64.1
BcaC07g40988 Brassica carinata HOM05D004652 ORTHO05D005634 5.5e-118 428.3 345 63.8
C08p39900 Brassica napus HOM05D004652 ORTHO05D005634 5.5e-118 428.3 345 63.8
CARHR293000 Cardamine hirsuta HOM05D004652 ORTHO05D005634 7.9e-117 424.5 315 66.7
Eucgr.H01690 Eucalyptus grandis HOM05D004652 ORTHO05D005634 1.8e-116 423.3 303 65.3
A09p56940 Brassica napus HOM05D004652 ORTHO05D005634 3.0e-116 422.5 345 62.9
Carub.0004s0257 Capsella rubella HOM05D004652 ORTHO05D005634 5.1e-116 421.8 342 63.2
Sp4g02380 Schrenkiella parvula HOM05D004652 ORTHO05D005634 5.1e-116 421.8 342 63.2
BraA09t41086Z Brassica rapa HOM05D004652 ORTHO05D005634 7.4e-115 417.9 345 62.3
AUR62001905 Chenopodium quinoa HOM05D004652 ORTHO05D005634 2.0e-112 409.8 308 63.6
Hund00119 Selenicereus undatus HOM05D004652 ORTHO05D005634 1.3e-111 407.1 341 63.3
Zm00001eb404220 Zea mays HOM05D004652 ORTHO05D005634 6.5e-111 404.8 323 60.4
ClCG02G012270 Citrullus lanatus HOM05D004652 ORTHO05D005634 1.4e-110 403.7 261 73.9
BolC7t46455H Brassica oleracea HOM05D004652 ORTHO05D005634 1.0e-108 397.5 333 63.4
Aa31LG7G13600 Aethionema arabicum HOM05D004652 ORTHO05D005634 1.4e-105 387.1 385 55.8
BraA03t15329Z Brassica rapa HOM05D004652 ORTHO05D005634 2.4e-105 386.3 330 62.1
Ca_08994_v3 Cicer arietinum L. HOM05D004652 ORTHO05D005634 2.4e-105 386.3 342 60.8
C07p60150 Brassica napus HOM05D004652 ORTHO05D005634 2.6e-104 382.9 360 58.6
A03p62590 Brassica napus HOM05D004652 ORTHO05D005634 2.2e-103 379.8 360 58.1
AUR62003906 Chenopodium quinoa HOM05D004652 ORTHO05D005634 3.8e-103 379.0 279 64.2
Cpa.g.sc200.27 Carica papaya HOM05D004652 ORTHO05D005634 4.7e-101 372.1 362 55.8
COL.COLO4_24563 Corchorus olitorius HOM05D004652 ORTHO05D005634 2.3e-100 369.8 251 72.1
SMO367G0761 Selaginella moellendorffii HOM05D004652 ORTHO05D005634 6.7e-100 368.2 303 57.4
Mapoly0032s0004 Marchantia polymorpha HOM05D004652 ORTHO05D005634 1.4e-97 360.5 311 54.3
Thhalv10000243m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 2.4e-97 359.8 327 57.8
COL.COLO4_32629 Corchorus olitorius HOM05D004652 ORTHO05D005634 1.3e-95 354.0 346 56.4
Pp3c4_13980 Physcomitrium patens HOM05D004652 ORTHO05D005634 1.5e-94 350.5 309 54.4
Pp3c13_18360 Physcomitrium patens HOM05D004652 ORTHO05D005634 3.4e-91 339.3 309 53.7
AagrBONN_evm.TU.Sc2ySwM_362.2895 Anthoceros agrestis HOM05D004652 ORTHO05D005634 7.7e-88 328.2 340 50.0
FAN26G0096 Fragaria x ananassa HOM05D004652 ORTHO05D005634 5.5e-86 322.0 164 96.3
Gohir.D13G040700 Gossypium hirsutum HOM05D004652 ORTHO05D005634 5.5e-86 322.0 229 70.7
CBR_g34458 Chara braunii HOM05D004652 ORTHO05D005634 2.3e-84 316.6 335 47.8
Eucgr.I01132 Eucalyptus grandis HOM05D004652 ORTHO05D005634 3.7e-82 309.3 233 66.5
EL10Ac6g15724 Beta vulgaris HOM05D004652 ORTHO05D005634 8.3e-82 308.1 232 62.9
Oeu004436.1 Olea europaea HOM05D004652 ORTHO05D005634 2.7e-80 303.1 318 55.7
Ah.02g125990 Amaranthus hybridus HOM05D004652 ORTHO05D005634 9.5e-78 294.7 279 53.8
TAR381G1258 Trochodendron aralioides HOM05D004652 ORTHO05D005634 1.8e-76 290.4 203 70.9
SEGI_25477 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 2.9e-58 229.9 164 65.2
SEGI_26044 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 2.9e-58 229.9 164 65.2
Aqoxy2G01254 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 1.2e-56 224.6 140 77.9
TAR381G1342 Trochodendron aralioides HOM05D004652 ORTHO05D005634 4.7e-45 186.0 112 77.7
Cre13.g563150 Chlamydomonas reinhardtii HOM05D004652 ORTHO05D005634 4.0e-44 183.0 324 34.6
ECA248G0229 Erigeron canadensis HOM05D004652 ORTHO05D005634 1.5e-43 181.0 194 52.1
Aqoxy4G02413 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 1.7e-42 177.6 112 76.8
PRCOL_00001748 Prasinoderma coloniale HOM05D004652 ORTHO05D005634 6.0e-40 169.1 308 35.1
MCO15G669 Micromonas commoda HOM05D004652 ORTHO05D005634 2.9e-34 150.2 330 32.1
Potri.001G304401 Populus trichocarpa HOM05D004652 ORTHO05D005634 1.8e-31 141.0 129 55.8
TAR381G1519 Trochodendron aralioides HOM05D004652 ORTHO05D005634 1.5e-30 137.9 164 48.2
MCO09G010 Micromonas commoda HOM05D004652 ORTHO05D005634 3.1e-28 130.2 361 32.4
Lalb_Chr09g0323281 Lupinus albus HOM05D004652 ORTHO05D005634 2.3e-23 114.0 169 39.6
Sabra07G0040900 Salix brachista HOM05D015619 ORTHO05D009044 2.5e-22 110.5 87 64.4
FAN23G0103 Fragaria x ananassa HOM05D004652 ORTHO05D198901 3.7e-21 106.7 117 55.6
Cc00_g07740 Coffea canephora HOM05D004652 ORTHO05D005634 1.9e-17 94.4 286 28.3
CDE01G0594 Ceratophyllum demersum HOM05D000934 ORTHO05D000746 6.0e-16 89.4 105 44.8


User provided reference genes

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