Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0105671 Rosa chinensis HOM05D005490 ORTHO05D006606 1.8e-248 862.4 493 100.0
FAN28G1226 Fragaria x ananassa HOM05D005490 ORTHO05D006606 1.3e-230 803.1 507 92.5
FAN19G0012 Fragaria x ananassa HOM05D005490 ORTHO05D006606 3.2e-229 798.5 489 93.0
Prupe.7G133300 Prunus persica HOM05D005490 ORTHO05D006606 3.2e-213 745.3 478 87.7
CiPaw.01G018200 Carya illinoinensis HOM05D005490 ORTHO05D006606 7.7e-199 697.6 480 83.5
QL06p041379 Quercus lobata HOM05D005490 ORTHO05D006606 1.5e-194 683.3 516 78.1
Gohir.D11G199100 Gossypium hirsutum HOM05D005490 ORTHO05D006606 4.8e-193 678.3 480 80.8
Dinv29986 Davidia involucrata HOM05D005490 ORTHO05D006606 2.6e-191 672.5 503 78.9
TWI09G1398 Tripterygium wilfordii HOM05D005490 ORTHO05D006606 5.5e-189 664.8 482 79.9
Manes.12G106800 Manihot esculenta HOM05D005490 ORTHO05D006606 9.4e-189 664.1 483 79.5
Lj7A69T47 Lonicera japonica HOM05D005490 ORTHO05D006606 3.6e-188 662.1 534 73.6
Ciclev10025320m.g Citrus clementina HOM05D005490 ORTHO05D006606 8.0e-188 661.0 500 77.0
Potri.007G044100 Populus trichocarpa HOM05D005490 ORTHO05D006606 2.3e-187 659.4 481 79.4
GSVIVG01022130001 Vitis vinifera HOM05D005490 ORTHO05D006606 3.0e-187 659.1 499 79.0
Actinidia03792 Actinidia chinensis HOM05D005490 ORTHO05D006606 5.2e-187 658.3 500 77.2
Thecc.01G056300 Theobroma cacao HOM05D005490 ORTHO05D006606 2.0e-186 656.4 483 79.3
CANSAT01G1717 Cannabis sativa HOM05D005490 ORTHO05D006606 4.4e-186 655.2 450 82.4
Lj2g0003149 Lotus japonicus HOM05D005490 ORTHO05D006606 9.7e-186 654.1 480 79.2
Lalb_Chr05g0213291 Lupinus albus HOM05D005490 ORTHO05D006606 8.2e-185 651.0 483 78.1
Duzib187G0068 Durio zibethinus HOM05D005490 ORTHO05D006606 1.1e-184 650.6 513 75.8
Cfa004023 Carpinus fangiana HOM05D005490 ORTHO05D006606 1.4e-184 650.2 482 78.4
DCAR_025733 Daucus carota HOM05D005490 ORTHO05D006606 1.7e-182 643.3 507 74.6
Gorai.007G213300 Gossypium raimondii HOM05D005490 ORTHO05D006606 1.7e-182 643.3 498 77.5
Gohir.A11G192400 Gossypium hirsutum HOM05D005490 ORTHO05D006606 1.9e-181 639.8 480 76.9
Nn5g30300 Nelumbo nucifera HOM05D005490 ORTHO05D006606 2.1e-180 636.3 500 73.8
TPR.G30705 Trifolium pratense HOM05D005490 ORTHO05D006606 1.0e-179 634.0 500 77.6
Aa31LG6G13990 Aethionema arabicum HOM05D005490 ORTHO05D006606 4.0e-179 632.1 514 73.9
Psat2g166360 Pisum sativum HOM05D005490 ORTHO05D006606 3.3e-178 629.0 500 74.8
Cc07_g05990 Coffea canephora HOM05D005490 ORTHO05D006606 4.4e-178 628.6 482 77.2
Sed0007368 Sechium edule HOM05D005490 ORTHO05D006606 4.4e-178 628.6 483 76.8
VMungo1215G3252 Vigna mungo HOM05D005490 ORTHO05D006606 4.4e-178 628.6 483 76.4
FAN26G0668 Fragaria x ananassa HOM05D005490 ORTHO05D006606 9.7e-178 627.5 383 92.2
A01p01850 Brassica napus HOM05D005490 ORTHO05D006606 4.8e-177 625.2 482 75.7
BraA01t00174Z Brassica rapa HOM05D005490 ORTHO05D006606 4.8e-177 625.2 482 75.7
C01p01990 Brassica napus HOM05D005490 ORTHO05D006606 1.1e-176 624.0 480 75.8
COL.COLO4_11415 Corchorus olitorius HOM05D005490 ORTHO05D006606 1.4e-176 623.6 447 80.1
Glyma.01G186000 Glycine max HOM05D005490 ORTHO05D006606 1.8e-176 623.2 500 74.4
Sc03g0001580 Simmondsia chinensis HOM05D005490 ORTHO05D006606 3.5e-175 619.0 479 75.8
Sp7g34780 Schrenkiella parvula HOM05D005490 ORTHO05D006606 2.9e-174 615.9 499 72.7
Medtr5g017430 Medicago truncatula HOM05D005490 ORTHO05D006606 5.0e-174 615.1 500 76.0
BolC1t00193H Brassica oleracea HOM05D005490 ORTHO05D006606 1.9e-173 613.2 491 73.9
arahy.Tifrunner.gnm1.ann1.JF37M9 Arachis hypogaea HOM05D005490 ORTHO05D006606 7.2e-173 611.3 480 74.8
Nitab4.5_0002016g0110 Nicotiana tabacum HOM05D005490 ORTHO05D006606 1.6e-172 610.1 482 73.4
MD02G1172000 Malus domestica HOM05D005490 ORTHO05D006606 2.1e-172 609.8 372 89.2
Carub.0007s0317 Capsella rubella HOM05D005490 ORTHO05D006606 4.7e-172 608.6 482 74.7
Lsat_1_v5_gn_2_84101 Lactuca sativa HOM05D005490 ORTHO05D006606 5.2e-171 605.1 506 72.7
CsaV3_2G016660 Cucumis sativus L. HOM05D005490 ORTHO05D006606 6.8e-171 604.7 451 77.2
PSO210G6251 Papaver somniferum HOM05D005490 ORTHO05D006606 6.8e-171 604.7 444 77.0
Phvul.002G018900 Phaseolus vulgaris HOM05D005490 ORTHO05D006606 7.5e-170 601.3 503 72.2
ClCG02G012530 Citrullus lanatus HOM05D005490 ORTHO05D006606 9.8e-170 600.9 498 72.9
Thhalv10025018m.g Eutrema salsugineum HOM05D005490 ORTHO05D006606 1.7e-169 600.1 482 74.7
HanXRQChr14g0442791 Helianthus annuus HOM05D005490 ORTHO05D006606 1.7e-169 600.1 477 73.6
Sabra07G0038800 Salix brachista HOM05D005490 ORTHO05D006606 3.7e-169 599.0 500 70.6
Hma1.2p1_0461F.1_g157810 Hydrangea macrophylla HOM05D005490 ORTHO05D006606 1.4e-168 597.0 497 71.8
PSO170G3823 Papaver somniferum HOM05D005490 ORTHO05D006606 2.4e-168 596.3 446 76.5
Ca_24770_v3 Cicer arietinum L. HOM05D005490 ORTHO05D006606 5.4e-168 595.1 449 78.0
Oeu031525.2 Olea europaea HOM05D005490 ORTHO05D006606 1.2e-167 594.0 501 71.7
THA.LOC104804216 Tarenaya hassleriana HOM05D005490 ORTHO05D006606 2.0e-167 593.2 483 72.7
PGSC0003DMG400004042 Solanum tuberosum HOM05D005490 ORTHO05D006606 5.9e-167 591.7 450 74.4
EL10Ac6g15745 Beta vulgaris HOM05D005490 ORTHO05D006606 7.7e-167 591.3 514 70.4
AL7G13750 Arabidopsis lyrata HOM05D005490 ORTHO05D006606 2.3e-166 589.7 482 72.6
Solyc02g090850.3 Solanum lycopersicum HOM05D005490 ORTHO05D006606 2.9e-166 589.3 450 74.0
FAN23G2111 Fragaria x ananassa HOM05D005490 ORTHO05D006606 1.5e-165 587.0 386 88.1
Glyma.11G056000 Glycine max HOM05D005490 ORTHO05D006606 1.9e-165 586.6 502 72.9
Oeu062437.1 Olea europaea HOM05D005490 ORTHO05D006606 7.2e-165 584.7 501 71.7
Gohir.A02G157300 Gossypium hirsutum HOM05D005490 ORTHO05D006606 1.6e-164 583.6 482 72.6
AT4G36980 Arabidopsis thaliana HOM05D005490 ORTHO05D006606 2.8e-164 582.8 499 72.3
Hund16323 Selenicereus undatus HOM05D005490 ORTHO05D006606 1.4e-163 580.5 479 73.1
Migut.H00433 Erythranthe guttata HOM05D005490 ORTHO05D006606 2.3e-163 579.7 480 72.3
CAN.G660.7 Capsicum annuum HOM05D005490 ORTHO05D006606 2.6e-162 576.2 453 73.5
arahy.Tifrunner.gnm1.ann1.5GG3L5 Arachis hypogaea HOM05D005490 ORTHO05D006606 7.5e-162 574.7 509 68.8
CSS0049924 Camellia sinensis var. sinensis HOM05D005490 ORTHO05D006606 9.8e-162 574.3 481 71.1
BcaNung02520 Brassica carinata HOM05D005490 ORTHO05D006606 1.7e-161 573.5 464 73.1
CDE08G0045 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 2.8e-161 572.8 510 67.8
CARHR245520 Cardamine hirsuta HOM05D005490 ORTHO05D006606 3.7e-161 572.4 499 70.7
Gorai.003G025100 Gossypium raimondii HOM05D005490 ORTHO05D006606 1.9e-157 560.1 482 71.2
Gohir.D03G023600 Gossypium hirsutum HOM05D005490 ORTHO05D006606 5.8e-154 548.5 450 73.1
CDE06G1923 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 4.9e-153 545.4 468 68.4
ECA238G0711 Erigeron canadensis HOM05D005490 ORTHO05D006606 2.4e-152 543.1 497 70.0
FvH4_1g16060 Fragaria vesca HOM05D005490 ORTHO05D006606 1.2e-151 540.8 336 94.9
SGA_v2.0_scaffold15G07303 Striga asiatica HOM05D005490 ORTHO05D006606 1.7e-150 537.0 446 72.0
AUR62001928 Chenopodium quinoa HOM05D005490 ORTHO05D006606 1.5e-149 533.9 508 64.6
Os03g0395900 Oryza sativa ssp. japonica HOM05D005490 ORTHO05D006606 8.0e-148 528.1 450 69.8
ATR1102G026 Amborella trichopoda HOM05D005490 ORTHO05D006606 4.0e-147 525.8 502 65.7
Potri.005G138200 Populus trichocarpa HOM05D005490 ORTHO05D006606 1.5e-146 523.9 375 79.7
Aqoxy5G01229 Aquilegia oxysepala HOM05D005490 ORTHO05D006606 3.2e-144 516.2 374 77.5
HPP92_004114 Vanilla planifolia HOM05D005490 ORTHO05D006606 5.0e-142 508.8 480 65.6
TAR381G1106 Trochodendron aralioides HOM05D005490 ORTHO05D006606 5.6e-141 505.4 376 76.6
Peaxi162Scf00450g00420 Petunia axillaris HOM05D005490 ORTHO05D006606 4.9e-137 492.3 498 61.2
Sabra05G0112300 Salix brachista HOM05D005490 ORTHO05D006606 1.7e-129 467.2 525 61.1
MD15G1284300 Malus domestica HOM05D005490 ORTHO05D006606 1.9e-128 463.8 334 81.7
AUR62003882 Chenopodium quinoa HOM05D005490 ORTHO05D006606 1.4e-120 437.6 473 58.1
Ah.03g145080 Amaranthus hybridus HOM05D005490 ORTHO05D006606 3.6e-116 422.9 383 69.2
Rhsim08G0100400 Rhododendron simsii HOM05D005490 ORTHO05D006606 1.9e-112 410.6 450 62.0
Nitab4.5_0002440g0010 Nicotiana tabacum HOM05D005490 ORTHO05D006606 4.2e-112 409.5 503 53.5
Mapoly0012s0107 Marchantia polymorpha HOM05D005490 ORTHO05D006606 4.0e-107 392.9 468 54.3
Eucgr.I00926 Eucalyptus grandis HOM05D005490 ORTHO05D006606 5.8e-106 389.0 361 71.5
Atru.chr3.327 Acer truncatum HOM05D005490 ORTHO05D006606 1.7e-105 387.5 307 77.9
Hma1.2p1_0461F.1_g157800 Hydrangea macrophylla HOM05D005490 ORTHO05D006606 1.4e-104 384.4 360 69.2
unitig_899.g14662 Utricularia gibba HOM05D005490 ORTHO05D006606 9.3e-104 381.7 376 63.3
vmacro17955 Vaccinium macrocarpon HOM05D005490 ORTHO05D006606 4.3e-101 372.9 391 67.5
Dinv39848 Davidia involucrata HOM05D005490 ORTHO05D006606 4.0e-99 366.3 288 76.0
MELO3C020875.2 Cucumis melo HOM05D005490 ORTHO05D006606 1.8e-94 350.9 310 71.3
Pp3c7_5520 Physcomitrium patens HOM05D005490 ORTHO05D006606 8.2e-92 342.0 520 48.1
Pp3c11_20900 Physcomitrium patens HOM05D005490 ORTHO05D006606 1.3e-84 318.2 520 46.3
HPP92_004074 Vanilla planifolia HOM05D005490 ORTHO05D006606 3.3e-77 293.5 343 59.2
Haze_15401 Corylus avellana HOM05D005490 ORTHO05D006606 4.8e-76 289.7 252 73.8
Haze_15403 Corylus avellana HOM05D005490 ORTHO05D006606 1.2e-74 285.0 252 73.0
Sopen02g035470 Solanum pennellii HOM05D005490 ORTHO05D006606 1.0e-73 282.0 240 70.4
Actinidia16483 Actinidia chinensis HOM05D005490 ORTHO05D006606 9.7e-69 265.4 316 58.5
SEGI_41077 Sequoiadendron giganteum HOM05D005490 ORTHO05D006606 2.9e-65 253.8 330 55.8
Zm00001eb019290 Zea mays HOM05D005490 ORTHO05D006606 2.9e-65 253.8 269 61.0
SMO356G0652 Selaginella moellendorffii HOM05D005490 ORTHO05D006606 5.7e-61 239.6 244 56.6
SEGI_00791 Sequoiadendron giganteum HOM05D005490 ORTHO05D006606 7.5e-61 239.2 154 77.9
Cpa.g.sc55.148 Carica papaya HOM05D005490 ORTHO05D006606 2.7e-58 230.7 128 91.4
Atru.chr3.328 Acer truncatum HOM05D005490 ORTHO05D006606 4.5e-58 229.9 128 89.8
CBR_g38045 Chara braunii HOM05D005490 ORTHO05D000004 5.0e-57 226.5 453 45.5
MD15G1284200 Malus domestica HOM05D005490 ORTHO05D006606 8.5e-57 225.7 126 90.5
Actinidia36493 Actinidia chinensis HOM05D005490 ORTHO05D006606 5.0e-49 199.9 349 42.1
AagrBONN_evm.TU.Sc2ySwM_344.4468 Anthoceros agrestis HOM05D005490 ORTHO05D006606 7.3e-40 169.5 475 33.3
Actinidia16484 Actinidia chinensis HOM05D005490 ORTHO05D006606 2.1e-39 167.9 84 94.0
MD02G1172100 Malus domestica HOM05D005490 ORTHO05D006606 6.1e-39 166.4 126 87.3
VMungo1309G0325 Vigna mungo HOM05D005490 ORTHO05D006606 1.9e-35 154.8 160 56.9
CSS0031445 Camellia sinensis var. sinensis HOM05D005490 ORTHO05D006606 1.4e-30 138.7 131 74.0
VMungo0720G1861 Vigna mungo HOM05D005490 ORTHO05D006606 5.2e-30 136.7 143 55.2
Aqoxy5G01228 Aquilegia oxysepala HOM05D005490 ORTHO05D006606 9.8e-29 132.5 112 70.5
FAN22G1581 Fragaria x ananassa HOM05D005490 ORTHO05D006606 1.5e-24 118.6 72 83.3
SHI08459 Sapria himalayana HOM05D005490 ORTHO05D006606 7.3e-24 116.3 285 35.1
FAN17G2271 Fragaria x ananassa HOM05D005490 ORTHO05D006606 4.7e-23 113.6 66 87.9
FAN17G1267 Fragaria x ananassa HOM05D005490 ORTHO05D006606 2.9e-20 104.4 64 87.5
TAR381G1012 Trochodendron aralioides HOM05D005490 ORTHO05D006606 1.9e-19 101.7 92 79.3
CDE08G1038 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 5.4e-19 100.1 374 32.6
VMungo1309G1585 Vigna mungo HOM05D005490 ORTHO05D006606 4.6e-18 97.1 88 62.5
VMungo0251G2361 Vigna mungo HOM05D007793 ORTHO05D010104 6.6e-17 93.2 87 58.6
Actinidia36494 Actinidia chinensis HOM05D005490 ORTHO05D006606 6.8e-14 83.2 79 67.1
Atru.chr10.1611 Acer truncatum HOM05D005490 ORTHO05D006606 7.6e-13 79.7 50 78.0
Cre12.g498350 Chlamydomonas reinhardtii HOM05D005490 ORTHO05D006606 2.4e-06 58.2 381 28.9


User provided reference genes

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