Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0105021 Rosa chinensis HOM05D006144 ORTHO05D006357 0.0e+00 2578.1 1320 100.0
FAN19G3143 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 2212.6 1328 87.3
FvH4_1g15710 Fragaria vesca HOM05D006144 ORTHO05D006357 0.0e+00 2210.3 1328 87.1
FAN26G0177 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 2208.7 1327 86.4
FAN23G0857 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 2202.6 1327 86.1
FAN28G0789 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 2119.0 1283 85.5
Prupe.7G136200 Prunus persica HOM05D006144 ORTHO05D006357 0.0e+00 1835.8 1337 73.1
MD15G1281500 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 1801.6 1335 70.4
MD02G1169100 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 1784.2 1337 70.9
QL06p042250 Quercus lobata HOM05D006144 ORTHO05D006357 0.0e+00 1411.0 1346 58.4
Cfa003998 Carpinus fangiana HOM05D006144 ORTHO05D006357 0.0e+00 1400.6 1344 58.1
Haze_15426 Corylus avellana HOM05D006144 ORTHO05D006357 0.0e+00 1399.8 1345 57.8
CiPaw.01G021400 Carya illinoinensis HOM05D006144 ORTHO05D006357 0.0e+00 1355.5 1333 56.0
Atru.chr3.396 Acer truncatum HOM05D006144 ORTHO05D006357 0.0e+00 1351.3 1350 55.6
Duzib147G1467 Durio zibethinus HOM05D006144 ORTHO05D006357 0.0e+00 1343.6 1353 55.7
Thecc.01G052700 Theobroma cacao HOM05D006144 ORTHO05D006357 0.0e+00 1313.1 1321 55.2
COL.COLO4_22183 Corchorus olitorius HOM05D006144 ORTHO05D006357 0.0e+00 1306.6 1320 54.8
CANSAT01G0270 Cannabis sativa HOM05D006144 ORTHO05D006357 0.0e+00 1296.6 1332 54.2
Gorai.007G053500 Gossypium raimondii HOM05D006144 ORTHO05D006357 0.0e+00 1291.6 1353 53.7
Gohir.A11G046100 Gossypium hirsutum HOM05D006144 ORTHO05D006357 0.0e+00 1289.2 1344 53.4
Gohir.D11G049700 Gossypium hirsutum HOM05D006144 ORTHO05D006357 0.0e+00 1287.7 1345 53.8
Potri.007G041300 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 1276.5 1372 53.3
Potri.005G136600 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 1246.9 1360 52.0
Ciclev10024721m.g Citrus clementina HOM05D006144 ORTHO05D006357 0.0e+00 1224.5 1314 52.4
Actinidia12060 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1223.0 1314 53.7
Manes.12G100500 Manihot esculenta HOM05D006144 ORTHO05D006357 0.0e+00 1221.5 1354 51.9
CSS0009151 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1215.7 1334 52.9
CSS0011451 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1208.7 1327 52.9
Actinidia36503 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1199.5 1308 52.7
Hma1.2p1_0200F.1_g086100 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 0.0e+00 1153.7 1341 51.1
TWI09G0039 Tripterygium wilfordii HOM05D006144 ORTHO05D006357 0.0e+00 1145.6 1348 48.5
CSS0044544 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1136.3 1247 52.4
Dinv39873 Davidia involucrata HOM05D006144 ORTHO05D006357 0.0e+00 1117.4 1336 48.9
Sabra07G0036900 Salix brachista HOM05D006144 ORTHO05D006357 0.0e+00 1102.8 1258 51.1
Cc07_g05860 Coffea canephora HOM05D006144 ORTHO05D006357 0.0e+00 1100.1 1326 48.7
vmacro05326 Vaccinium macrocarpon HOM05D006144 ORTHO05D006357 0.0e+00 1097.8 1442 46.1
Rhsim10G0119800 Rhododendron simsii HOM05D006144 ORTHO05D006357 0.0e+00 1096.6 1293 50.2
CsaV3_6G043130 Cucumis sativus L. HOM05D006144 ORTHO05D006357 0.0e+00 1078.2 1344 46.7
Nn5g30196 Nelumbo nucifera HOM05D006144 ORTHO05D006357 1.8e-311 1073.2 1351 47.0
Glyma.11G057500 Glycine max HOM05D006144 ORTHO05D006357 2.3e-310 1069.3 1305 47.8
Glyma.01G184700 Glycine max HOM05D006144 ORTHO05D006357 4.9e-308 1061.6 1320 47.0
Nn1g05861 Nelumbo nucifera HOM05D006144 ORTHO05D006357 2.1e-306 1056.2 1360 48.9
ClCG01G016710 Citrullus lanatus HOM05D006144 ORTHO05D006357 2.3e-305 1052.7 1329 46.8
arahy.Tifrunner.gnm1.ann1.IY5EPV Arachis hypogaea HOM05D006144 ORTHO05D006357 3.0e-305 1052.4 1313 47.2
Phvul.002G020300 Phaseolus vulgaris HOM05D006144 ORTHO05D006357 3.9e-305 1052.0 1323 47.2
Sed0018548 Sechium edule HOM05D006144 ORTHO05D006357 1.9e-304 1049.7 1322 46.7
arahy.Tifrunner.gnm1.ann1.AH11HU Arachis hypogaea HOM05D006144 ORTHO05D006357 7.3e-304 1047.7 1314 47.2
VMungo1215G0092 Vigna mungo HOM05D006144 ORTHO05D006357 2.1e-303 1046.2 1337 47.6
Ca_24781_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 3.1e-302 1042.3 1326 46.3
Dinv29969 Davidia involucrata HOM05D006144 ORTHO05D006357 4.2e-299 1031.9 1193 50.2
Lj2g0024358 Lotus japonicus HOM05D006144 ORTHO05D006357 1.1e-296 1023.8 1318 46.1
Nitab4.5_0000382g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 5.6e-296 1021.5 1281 46.4
Nitab4.5_0001684g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 1.1e-294 1017.3 1294 46.1
Eucgr.H01999 Eucalyptus grandis HOM05D006144 ORTHO05D006357 9.0e-294 1014.2 1319 45.8
TPR.G31101 Trifolium pratense HOM05D006144 ORTHO05D006357 2.6e-293 1012.7 1313 46.2
Oeu003786.1 Olea europaea HOM05D006144 ORTHO05D006357 1.7e-292 1010.0 1228 46.8
PGSC0003DMG400019754 Solanum tuberosum HOM05D006144 ORTHO05D006357 4.9e-292 1008.4 1288 46.0
MELO3C007550.2 Cucumis melo HOM05D006144 ORTHO05D006357 1.6e-290 1003.4 1207 47.4
Peaxi162Scf00183g00711 Petunia axillaris HOM05D006144 ORTHO05D006357 1.3e-289 1000.3 1327 45.2
Lalb_Chr16g0388301 Lupinus albus HOM05D006144 ORTHO05D006357 3.9e-289 998.8 1278 46.5
CAN.G11.1 Capsicum annuum HOM05D006144 ORTHO05D006357 1.2e-282 977.2 1295 44.9
Sopen03g008900 Solanum pennellii HOM05D006144 ORTHO05D006357 5.6e-280 968.4 1338 44.8
Oeu049306.1 Olea europaea HOM05D006144 ORTHO05D006357 7.4e-280 968.0 1271 45.4
MSTRG.2895 Avicennia marina HOM05D006144 ORTHO05D006357 1.3e-279 967.2 1341 45.3
Solyc03g044620.4 Solanum lycopersicum HOM05D006144 ORTHO05D006357 1.6e-279 966.8 1342 43.7
Psat0s3889g0080 Pisum sativum HOM05D006144 ORTHO05D006357 4.0e-278 962.2 1339 43.0
Aqoxy6G01406 Aquilegia oxysepala HOM05D006144 ORTHO05D006357 1.1e-275 954.1 1338 43.3
PGR102G0121 Punica granatum HOM05D006144 ORTHO05D006357 4.6e-274 948.7 1370 43.6
DCAR_025720 Daucus carota HOM05D006144 ORTHO05D006357 3.0e-273 946.0 1336 44.3
Migut.H00451 Erythranthe guttata HOM05D006144 ORTHO05D006357 6.9e-262 908.3 1315 43.3
Lalb_Chr09g0333701 Lupinus albus HOM05D006144 ORTHO05D006357 7.2e-259 898.3 1339 42.0
MBI06_g08189_MAGBIO Magnolia biondii HOM05D006144 ORTHO05D006357 4.7e-250 869.0 1347 41.9
Hund13563 Selenicereus undatus HOM05D006144 ORTHO05D006357 5.0e-244 849.0 1315 40.1
Oeu004869.1 Olea europaea HOM05D006144 ORTHO05D006357 5.5e-243 845.5 1313 41.5
Sc03g0001430 Simmondsia chinensis HOM05D006144 ORTHO05D006357 6.3e-239 832.0 1343 41.5
THA.LOC104826201 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 1.9e-235 820.5 1341 40.6
SGA_v2.0_scaffold204G41590 Striga asiatica HOM05D006144 ORTHO05D006357 4.0e-225 786.2 1338 39.7
EL10Ac6g15152 Beta vulgaris HOM05D006144 ORTHO05D006357 1.2e-216 758.1 1309 38.1
ATR0104G015 Amborella trichopoda HOM05D006144 ORTHO05D006357 5.6e-211 739.2 1339 38.6
THA.LOC104804508 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 1.1e-201 708.4 1085 41.2
GSVIVG01002633001 Vitis vinifera HOM05D006144 ORTHO05D006357 5.2e-201 706.1 690 57.0
TAR381G1042 Trochodendron aralioides HOM05D006144 ORTHO05D006357 1.3e-199 701.4 704 54.8
AUR62003855 Chenopodium quinoa HOM05D006144 ORTHO05D006357 4.9e-199 699.5 1302 37.3
HPP92_004081 Vanilla planifolia HOM05D006144 ORTHO05D006357 1.6e-194 684.5 1268 36.4
Ah.03g144510 Amaranthus hybridus HOM05D006144 ORTHO05D006357 1.1e-187 661.8 1299 36.5
AUR62001952 Chenopodium quinoa HOM05D006144 ORTHO05D006357 8.1e-186 655.6 1226 37.2
Cpa.g.sc55.182 Carica papaya HOM05D006144 ORTHO05D006357 4.9e-183 646.4 696 53.9
HanXRQChr14g0430551 Helianthus annuus HOM05D006144 ORTHO05D006357 4.3e-179 633.3 1304 35.9
Os03g0186500 Oryza sativa ssp. japonica HOM05D006144 ORTHO05D006357 4.8e-178 629.8 1190 35.8
ECA232G0891 Erigeron canadensis HOM05D006144 ORTHO05D006357 7.4e-171 605.9 1220 35.3
Zm00001eb006470 Zea mays HOM05D006144 ORTHO05D006357 2.4e-169 600.9 1365 33.8
Lj4C140T7 Lonicera japonica HOM05D006144 ORTHO05D006357 9.9e-168 595.5 698 49.6
CDE03G0440 Ceratophyllum demersum HOM05D006144 ORTHO05D006357 1.5e-163 581.6 1261 35.0
Lsat_1_v5_gn_4_167780 Lactuca sativa HOM05D006144 ORTHO05D006357 1.7e-159 568.2 1297 32.3
Lj4A140T30 Lonicera japonica HOM05D006144 ORTHO05D006357 6.5e-159 566.2 643 49.3
Cpa.g.sc55.178 Carica papaya HOM05D006144 ORTHO05D006357 1.7e-151 541.6 622 48.6
TAR381G0606 Trochodendron aralioides HOM05D006144 ORTHO05D006357 2.5e-147 527.7 570 52.8
PSO675G0817 Papaver somniferum HOM05D006144 ORTHO05D006357 5.1e-140 503.4 727 43.6
Ca_22186_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 3.2e-134 484.2 777 38.9
Psat4g089200 Pisum sativum HOM05D006144 ORTHO05D006357 3.1e-129 467.6 791 40.3
PSO541G4136 Papaver somniferum HOM05D006144 ORTHO05D006357 1.3e-127 462.2 731 41.3
HPP92_004109 Vanilla planifolia HOM05D006144 ORTHO05D006357 3.8e-111 407.5 708 35.6
Hma1.2p1_1415F.1_g282000 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 7.5e-107 393.3 683 41.7
TPR.G640 Trifolium pratense HOM05D006144 ORTHO05D006357 5.9e-96 357.1 367 52.0
Mapoly0063s0038 Marchantia polymorpha HOM05D006144 ORTHO05D006357 8.6e-95 353.2 785 33.0
MSTRG.23764 Avicennia marina HOM05D006144 ORTHO05D006357 4.7e-93 347.4 697 38.2
unitig_736.g22372 Utricularia gibba HOM05D006144 ORTHO05D006357 3.4e-91 341.3 684 36.7
Mapoly0063s0034 Marchantia polymorpha HOM05D006144 ORTHO05D006357 2.5e-86 325.1 893 30.2
SEGI_17223 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 1.1e-68 266.5 347 42.7
SMO301G0037 Selaginella moellendorffii HOM05D006144 ORTHO05D006357 3.1e-68 265.0 805 27.3
SEGI_14166 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 3.4e-67 261.5 612 32.4
AUR62039591 Chenopodium quinoa HOM05D006144 ORTHO05D006357 4.8e-45 188.0 295 39.3
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 1.2e-40 173.3 293 36.9
Aa31LG1G15380 Aethionema arabicum HOM05D012861 ORTHO05D006357 6.0e-40 171.0 595 29.6
AT5G66820 Arabidopsis thaliana HOM05D012861 ORTHO05D006357 1.5e-38 166.4 565 31.3
unitig_736.g22373 Utricularia gibba HOM05D006144 ORTHO05D006357 2.8e-29 135.6 261 33.0
Sp2g29830 Schrenkiella parvula HOM05D012861 ORTHO05D006357 1.4e-25 123.2 567 30.5
Dinv29968 Davidia involucrata HOM05D000370 ORTHO05D001366 2.5e-25 122.5 115 53.9
Pp3c4_25960 Physcomitrium patens HOM05D006144 ORTHO05D006357 7.9e-24 117.5 380 25.5
unitig_736.g22374 Utricularia gibba HOM05D006144 ORTHO05D006357 2.6e-22 112.5 206 36.4
Carub.0008s2766 Capsella rubella HOM05D012861 ORTHO05D006357 2.9e-18 99.0 569 26.7
Thhalv10004001m.g Eutrema salsugineum HOM05D012861 ORTHO05D006357 3.8e-18 98.6 558 26.2
AL8G44580 Arabidopsis lyrata HOM05D012861 ORTHO05D006357 1.9e-17 96.3 200 36.5
CARHR280840 Cardamine hirsuta HOM05D012861 ORTHO05D006357 2.5e-17 95.9 568 27.5
CBR_g31222 Chara braunii HOM05D006144 ORTHO05D006357 6.1e-16 91.3 142 33.8
Ca_06605_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 8.0e-16 90.9 314 33.1
Ca_06861_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 8.0e-16 90.9 314 33.1
AagrBONN_evm.TU.Sc2ySwM_228.442 Anthoceros agrestis HOM05D006144 ORTHO05D006357 1.5e-14 86.7 320 25.3
MCO09G582 Micromonas commoda HOM05D006144 ORTHO05D006357 5.7e-14 84.7 383 21.7
BcaB02g09983 Brassica carinata HOM05D012861 ORTHO05D006357 9.7e-14 84.0 197 34.5
Sabra05G0109200 Salix brachista HOM05D006144 ORTHO05D006357 1.3e-13 83.6 189 38.6
Sc11g0005350 Simmondsia chinensis HOM05D006144 ORTHO05D006357 3.5e-11 75.5 137 32.1
Sabra05G0109100 Salix brachista HOM05D006144 ORTHO05D006357 5.0e-10 71.6 181 33.1
Medtr8g079870 Medicago truncatula HOM05D006144 ORTHO05D006357 4.0e-07 62.0 93 41.9
SEGI_01818 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 1.2e-06 60.5 93 38.7
TPR.G19009 Trifolium pratense HOM05D006144 ORTHO05D006357 1.2e-06 60.5 104 31.7


User provided reference genes

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