Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0104711 Rosa chinensis HOM05D005552 ORTHO05D006743 0.0e+00 1140.2 576 100.0
FAN26G2590 Fragaria x ananassa HOM05D005552 ORTHO05D006743 6.2e-308 1060.1 576 92.4
FAN28G0665 Fragaria x ananassa HOM05D005552 ORTHO05D006743 2.6e-306 1054.7 576 91.7
FvH4_1g15480 Fragaria vesca HOM05D005552 ORTHO05D006743 8.4e-305 1049.7 576 91.1
FAN19G0212 Fragaria x ananassa HOM05D005552 ORTHO05D006743 1.3e-302 1042.3 576 90.5
Prupe.7G138000 Prunus persica HOM05D005552 ORTHO05D006743 5.7e-261 904.0 577 79.7
MD15G1279300 Malus domestica HOM05D005552 ORTHO05D006743 3.2e-256 888.3 576 77.4
MD02G1166800 Malus domestica HOM05D005552 ORTHO05D006743 3.4e-245 851.7 570 75.3
Dinv39890 Davidia involucrata HOM05D005552 ORTHO05D006743 2.3e-233 812.4 576 70.0
CiPaw.01G023200 Carya illinoinensis HOM05D005552 ORTHO05D006743 1.9e-232 809.3 576 69.8
Thecc.01G050800 Theobroma cacao HOM05D005552 ORTHO05D006743 2.5e-232 808.9 576 69.6
COL.COLO4_11363 Corchorus olitorius HOM05D005552 ORTHO05D006743 1.2e-231 806.6 576 70.0
GSVIVG01003549001 Vitis vinifera HOM05D005552 ORTHO05D006743 6.1e-231 804.3 577 68.6
Gorai.007G210400 Gossypium raimondii HOM05D005552 ORTHO05D006743 1.0e-230 803.5 576 69.1
Gohir.D11G196500 Gossypium hirsutum HOM05D005552 ORTHO05D006743 2.3e-230 802.4 576 69.1
Duzib264G1173 Durio zibethinus HOM05D005552 ORTHO05D006743 3.1e-230 802.0 576 69.8
Cfa003976 Carpinus fangiana HOM05D005552 ORTHO05D006743 6.8e-230 800.8 576 69.6
QL06p042750 Quercus lobata HOM05D005552 ORTHO05D006743 5.8e-229 797.7 575 71.0
Cc02_g34610 Coffea canephora HOM05D005552 ORTHO05D006743 7.8e-226 787.3 575 67.5
Potri.001G361900 Populus trichocarpa HOM05D005552 ORTHO05D006743 6.6e-225 784.3 578 68.7
Ciclev10025258m.g Citrus clementina HOM05D005552 ORTHO05D006743 1.9e-224 782.7 576 67.5
CANSAT64G0631 Cannabis sativa HOM05D005552 ORTHO05D006743 1.1e-222 776.9 576 67.7
TWI09G0520 Tripterygium wilfordii HOM05D005552 ORTHO05D006743 2.9e-220 768.8 576 66.1
Haze_15444 Corylus avellana HOM05D005552 ORTHO05D006743 4.9e-220 768.1 587 67.1
Oeu020899.1 Olea europaea HOM05D005552 ORTHO05D006743 2.7e-218 762.3 576 65.5
vmacro21371 Vaccinium macrocarpon HOM05D005552 ORTHO05D006743 3.9e-217 758.4 576 65.1
Actinidia12065 Actinidia chinensis HOM05D005552 ORTHO05D006743 2.3e-214 749.2 576 64.6
CSS0032711 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 1.5e-213 746.5 576 66.7
Cpa.g.sc6.396 Carica papaya HOM05D005552 ORTHO05D006743 2.6e-213 745.7 576 66.1
Aqoxy6G00889 Aquilegia oxysepala HOM05D005552 ORTHO05D006743 1.6e-210 736.5 577 63.8
PGR119G0642 Punica granatum HOM05D005552 ORTHO05D006743 6.6e-209 731.1 576 64.8
Rhsim01G0119100 Rhododendron simsii HOM05D005552 ORTHO05D006743 8.6e-209 730.7 577 63.6
FvH4_5g33502 Fragaria vesca HOM05D005552 ORTHO05D006743 5.6e-208 728.0 498 78.5
Glyma.11G058500 Glycine max HOM05D005552 ORTHO05D006743 1.2e-207 726.9 576 65.1
PGSC0003DMG400024733 Solanum tuberosum HOM05D005552 ORTHO05D006743 2.1e-207 726.1 576 63.9
Eucgr.I00976 Eucalyptus grandis HOM05D005552 ORTHO05D006743 2.8e-207 725.7 576 63.4
ClCG01G016650 Citrullus lanatus HOM05D005552 ORTHO05D006743 3.6e-207 725.3 576 63.5
CAN.G1273.15 Capsicum annuum HOM05D005552 ORTHO05D006743 4.7e-207 724.9 577 63.8
Lj4C139G4 Lonicera japonica HOM05D005552 ORTHO05D006743 6.2e-207 724.5 579 63.2
Glyma.01G183800 Glycine max HOM05D005552 ORTHO05D006743 4.0e-206 721.8 595 63.4
Sc16g0001610 Simmondsia chinensis HOM05D005552 ORTHO05D006743 2.6e-205 719.2 576 62.2
Sopen01g043680 Solanum pennellii HOM05D005552 ORTHO05D006743 2.6e-205 719.2 576 63.7
Psat2g165040 Pisum sativum HOM05D005552 ORTHO05D006743 4.4e-205 718.4 577 62.9
THA.LOC104807572 Tarenaya hassleriana HOM05D005552 ORTHO05D006743 4.4e-205 718.4 577 61.7
Solyc01g100190.4 Solanum lycopersicum HOM05D005552 ORTHO05D006743 7.6e-205 717.6 576 63.2
Ca_24792_v3 Cicer arietinum L. HOM05D005552 ORTHO05D006743 9.9e-205 717.2 576 62.5
Sed0018600 Sechium edule HOM05D005552 ORTHO05D006743 9.9e-205 717.2 576 62.5
MELO3C007542.2 Cucumis melo HOM05D005552 ORTHO05D006743 1.7e-204 716.5 576 62.7
Lalb_Chr05g0213171 Lupinus albus HOM05D005552 ORTHO05D006743 2.9e-204 715.7 576 63.5
VMungo1215G1500 Vigna mungo HOM05D005552 ORTHO05D006743 3.8e-204 715.3 578 64.5
ECA232G0422 Erigeron canadensis HOM05D005552 ORTHO05D006743 1.4e-203 713.4 577 61.2
arahy.Tifrunner.gnm1.ann1.21BGDZ Arachis hypogaea HOM05D005552 ORTHO05D006743 5.4e-203 711.4 605 60.5
MSTRG.5133 Avicennia marina HOM05D005552 ORTHO05D006743 1.2e-202 710.3 576 63.0
Hund16313 Selenicereus undatus HOM05D005552 ORTHO05D006743 1.2e-202 710.3 576 64.1
Medtr5g017970 Medicago truncatula HOM05D005552 ORTHO05D006743 1.6e-202 709.9 577 63.4
PSO541G0461 Papaver somniferum HOM05D005552 ORTHO05D006743 1.6e-202 709.9 578 61.6
PSO675G7200 Papaver somniferum HOM05D005552 ORTHO05D006743 1.0e-201 707.2 578 61.6
Nitab4.5_0002715g0120 Nicotiana tabacum HOM05D005552 ORTHO05D006743 1.3e-201 706.8 607 61.0
TPR.G11337 Trifolium pratense HOM05D005552 ORTHO05D006743 5.1e-201 704.9 576 63.0
AUR62003843 Chenopodium quinoa HOM05D005552 ORTHO05D006743 1.1e-200 703.7 576 61.1
Lj2g0010083 Lotus japonicus HOM05D005552 ORTHO05D006743 1.4e-198 696.8 576 62.3
Lj6g0016933 Lotus japonicus HOM05D005552 ORTHO05D006743 1.4e-198 696.8 576 62.3
AUR62001963 Chenopodium quinoa HOM05D005552 ORTHO05D006743 2.0e-197 693.0 576 60.9
Lsat_1_v5_gn_4_168700 Lactuca sativa HOM05D005552 ORTHO05D006743 2.6e-197 692.6 579 58.7
Carub.0007s0338 Capsella rubella HOM05D005552 ORTHO05D006743 2.2e-196 689.5 579 61.3
AT4G37190 Arabidopsis thaliana HOM05D005552 ORTHO05D006743 4.6e-194 681.8 579 61.0
AL7G13990 Arabidopsis lyrata HOM05D005552 ORTHO05D006743 8.7e-193 677.6 579 60.6
Sp7g34600 Schrenkiella parvula HOM05D005552 ORTHO05D006743 2.5e-192 676.0 579 60.4
CARHR245320 Cardamine hirsuta HOM05D005552 ORTHO05D006743 4.3e-192 675.2 579 60.3
arahy.Tifrunner.gnm1.ann1.A2BBUY Arachis hypogaea HOM05D005552 ORTHO05D006743 7.3e-192 674.5 576 60.9
HanXRQChr14g0430701 Helianthus annuus HOM05D005552 ORTHO05D006743 8.1e-191 671.0 577 58.9
Nitab4.5_0000368g0430 Nicotiana tabacum HOM05D005552 ORTHO05D006743 1.3e-188 663.7 606 58.7
Aa31LG6G13810 Aethionema arabicum HOM05D005552 ORTHO05D006743 5.4e-187 658.3 577 58.9
Hma1.2p1_0873F.1_g231280 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 7.9e-186 654.4 518 64.7
Thhalv10024834m.g Eutrema salsugineum HOM05D005552 ORTHO05D006743 1.9e-184 649.8 579 58.7
Manes.16G089500 Manihot esculenta HOM05D005552 ORTHO05D006743 2.1e-183 646.4 498 65.7
A03p64710 Brassica napus HOM05D005552 ORTHO05D006743 2.4e-182 642.9 578 58.3
BraA03t15535Z Brassica rapa HOM05D005552 ORTHO05D006743 2.4e-182 642.9 578 58.3
Os03g0240900 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 2.6e-181 639.4 578 56.9
HPP92_017765 Vanilla planifolia HOM05D005552 ORTHO05D006743 2.2e-180 636.3 576 56.6
BcaNung04273 Brassica carinata HOM05D005552 ORTHO05D006743 6.4e-180 634.8 578 58.3
CsaV3_6G043060 Cucumis sativus L. HOM05D005552 ORTHO05D006743 1.6e-178 630.2 519 61.3
SGA_v2.0_scaffold36G14364 Striga asiatica HOM05D005552 ORTHO05D006743 1.6e-178 630.2 646 52.8
C07p62120 Brassica napus HOM05D005552 ORTHO05D006743 3.5e-178 629.0 578 57.6
BolC7t46629H Brassica oleracea HOM05D005552 ORTHO05D006743 3.5e-178 629.0 578 57.6
FAN18G3771 Fragaria x ananassa HOM05D005552 ORTHO05D006743 5.1e-177 625.2 368 87.8
ATR0767G265 Amborella trichopoda HOM05D005552 ORTHO05D006743 8.7e-177 624.4 554 57.9
Peaxi162Scf00073g00015 Petunia axillaris HOM05D005552 ORTHO05D006743 4.3e-176 622.1 503 63.8
Phvul.002G021300 Phaseolus vulgaris HOM05D005552 ORTHO05D006743 5.3e-174 615.1 518 61.2
CDE04G2042 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 2.2e-172 609.8 553 56.6
Zm00001eb030410 Zea mays HOM05D005552 ORTHO05D006743 3.0e-169 599.4 576 54.0
TAR628G0695 Trochodendron aralioides HOM05D005552 ORTHO05D006743 1.1e-166 590.9 429 68.3
DCAR_010923 Daucus carota HOM05D005552 ORTHO05D006743 2.0e-165 586.6 681 47.4
Sopen01g043710 Solanum pennellii HOM05D005552 ORTHO05D006743 7.7e-165 584.7 476 63.4
BcaNung03946 Brassica carinata HOM05D005552 ORTHO05D006743 1.4e-163 580.5 552 56.5
Hma1.2p1_0873F.1_g231290 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 4.6e-162 575.5 444 64.9
FAN08G3227 Fragaria x ananassa HOM05D005552 ORTHO05D006743 4.3e-160 568.9 475 67.6
Gohir.A11G189700 Gossypium hirsutum HOM05D005552 ORTHO05D006743 4.8e-151 538.9 395 67.6
Nn6g32078 Nelumbo nucifera HOM05D005552 ORTHO05D006743 7.7e-149 531.6 430 62.6
Oeu035482.1 Olea europaea HOM05D005552 ORTHO05D006743 5.5e-147 525.4 394 66.0
SEGI_18564 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 2.7e-146 523.1 555 49.4
TAR376G0305 Trochodendron aralioides HOM05D005552 ORTHO05D006743 5.0e-140 502.3 472 57.2
Os12g0586400 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 2.6e-136 490.0 583 48.4
Atru.chr3.424 Acer truncatum HOM05D005552 ORTHO05D006743 5.0e-124 449.1 357 62.2
Mapoly0024s0139 Marchantia polymorpha HOM05D005552 ORTHO05D006743 1.5e-123 447.6 609 42.0
CDE06G0261 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 1.4e-121 441.0 463 51.6
Pp3c2_14950 Physcomitrium patens HOM05D005552 ORTHO05D006743 9.8e-112 408.3 599 40.9
SMO358G0218 Selaginella moellendorffii HOM05D005552 ORTHO05D006743 1.2e-106 391.3 579 40.6
HanXRQChr04g0119851 Helianthus annuus HOM05D005552 ORTHO05D006743 1.4e-102 377.9 298 62.1
unitig_26.g9473 Utricularia gibba HOM05D005552 ORTHO05D006743 4.5e-72 276.6 245 57.1
Atru.chr2.470 Acer truncatum HOM05D005552 ORTHO05D006743 3.9e-60 236.9 386 40.2
HanXRQChr04g0119841 Helianthus annuus HOM05D005552 ORTHO05D006743 3.1e-57 227.3 208 58.7
Atru.chr3.423 Acer truncatum HOM05D005552 ORTHO05D006743 3.8e-55 220.3 159 69.8
CBR_g38209 Chara braunii HOM05D005552 ORTHO05D006743 1.1e-54 218.8 529 30.6
unitig_26.g9472 Utricularia gibba HOM05D005552 ORTHO05D006743 6.1e-53 213.0 297 43.4
SHI23011 Sapria himalayana HOM05D005552 ORTHO05D006743 1.6e-32 145.2 152 52.0
arahy.Tifrunner.gnm1.ann1.ENA0P5 Arachis hypogaea HOM05D005552 ORTHO05D006743 6.5e-31 139.8 99 67.7
MCO05G662 Micromonas commoda HOM05D005552 ORTHO05D006743 6.5e-31 139.8 460 25.0
Psat4g201960 Pisum sativum HOM05D005552 ORTHO05D006743 1.5e-30 138.7 135 54.8
arahy.Tifrunner.gnm1.ann1.S73BBB Arachis hypogaea HOM05D005552 ORTHO05D006743 8.8e-28 129.4 225 38.2
SHI23015 Sapria himalayana HOM05D005552 ORTHO05D006743 6.3e-26 123.2 131 45.8
Psat1g136760 Pisum sativum HOM05D005552 ORTHO05D006743 5.3e-25 120.2 119 51.3
Peaxi162Scf00073g00115 Petunia axillaris HOM05D005552 ORTHO05D006743 7.0e-25 119.8 74 68.9
Cfa026632 Carpinus fangiana HOM05D005552 ORTHO05D006743 6.5e-23 113.2 371 25.6
Cre01.g043700 Chlamydomonas reinhardtii HOM05D005552 ORTHO05D006743 8.5e-23 112.8 434 24.4
C01p02170 Brassica napus HOM05D005552 ORTHO05D006743 4.2e-22 110.5 115 49.6
BolC1t00209H Brassica oleracea HOM05D005552 ORTHO05D006743 4.2e-22 110.5 115 49.6
TAR376G0458 Trochodendron aralioides HOM05D005552 ORTHO05D006743 1.6e-21 108.6 73 72.6
Psat5g241560 Pisum sativum HOM05D005552 ORTHO05D006743 2.2e-18 98.2 90 54.4
CSS0040680 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 1.8e-17 95.1 79 57.0
FvH4_5g33501 Fragaria vesca HOM05D005552 ORTHO05D006743 1.6e-16 92.0 45 91.1
CSS0023439 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 3.5e-16 90.9 79 55.7
Cpa.g.sc6.394 Carica papaya HOM05D005552 ORTHO05D006743 2.1e-13 81.6 263 27.8
SHI23016 Sapria himalayana HOM05D000105 ORTHO05D000023 8.0e-13 79.7 56 66.1
Ah.11g041060 Amaranthus hybridus HOM05D005552 ORTHO05D006743 8.8e-12 76.3 52 65.4
SEGI_06310 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 2.2e-10 71.6 51 60.8
CSS0024475 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D113139 1.1e-06 59.3 61 50.8


User provided reference genes

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