Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 1.2e-123 446.4 220 100.0
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 5.1e-117 424.5 221 94.6
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 6.6e-117 424.1 221 94.1
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 1.1e-116 423.3 221 94.1
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 2.5e-116 422.2 221 94.1
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 2.8e-115 418.7 222 93.7
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 1.9e-111 406.0 220 90.5
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 6.0e-110 401.0 220 88.6
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 2.3e-109 399.1 220 88.2
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 3.0e-109 398.7 220 88.6
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 8.6e-109 397.1 220 88.2
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 8.6e-109 397.1 220 87.3
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 1.9e-108 396.0 220 87.3
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 2.5e-108 395.6 220 86.8
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 2.5e-108 395.6 220 85.9
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 4.3e-108 394.8 221 87.3
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 2.8e-107 392.1 220 86.4
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 2.8e-107 392.1 220 87.3
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 4.7e-107 391.3 220 85.5
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 6.2e-107 391.0 220 85.9
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 8.1e-107 390.6 220 85.0
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 1.4e-106 389.8 220 86.8
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 2.4e-106 389.0 220 85.9
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 4.0e-106 388.3 220 86.8
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 8.9e-106 387.1 220 85.9
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 4.4e-105 384.8 238 81.5
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 4.4e-105 384.8 220 85.0
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 2.2e-104 382.5 220 82.7
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 3.8e-104 381.7 220 87.3
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 4.9e-104 381.3 220 84.1
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 6.4e-104 380.9 220 85.9
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 6.4e-104 380.9 220 83.6
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 6.4e-104 380.9 220 83.6
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 1.1e-103 380.2 220 84.1
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 1.4e-103 379.8 220 83.6
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 4.2e-103 378.3 220 84.1
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 1.6e-102 376.3 220 82.7
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 3.5e-102 375.2 220 82.7
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 4.6e-102 374.8 220 82.3
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 1.3e-101 373.2 220 81.8
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 2.3e-101 372.5 220 83.2
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 5.1e-101 371.3 220 82.3
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 6.6e-101 370.9 220 82.7
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 8.7e-101 370.5 221 81.0
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 8.7e-101 370.5 221 81.0
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 1.9e-100 369.4 221 80.5
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 2.5e-100 369.0 220 81.4
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 7.3e-100 367.5 220 81.4
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 1.3e-99 366.7 220 81.8
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 2.1e-99 365.9 220 81.4
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 2.8e-99 365.5 220 79.5
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 4.8e-99 364.8 221 79.6
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 6.2e-99 364.4 220 80.5
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 8.1e-99 364.0 220 79.1
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 2.4e-98 362.5 220 81.8
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 4.0e-98 361.7 220 79.1
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 1.2e-97 360.1 220 80.5
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 3.4e-97 358.6 319 60.8
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 5.8e-97 357.8 220 79.5
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 7.6e-97 357.5 229 77.7
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 7.6e-97 357.5 220 79.1
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 2.2e-96 355.9 220 78.6
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 4.9e-96 354.8 199 86.4
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 8.4e-96 354.0 196 86.7
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 8.4e-96 354.0 220 80.5
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 8.4e-96 354.0 222 79.3
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 1.1e-95 353.6 220 78.6
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 1.9e-95 352.8 220 79.1
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 7.1e-95 350.9 220 78.6
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 7.1e-95 350.9 220 79.1
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 7.1e-95 350.9 220 79.1
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 1.6e-94 349.7 194 86.6
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 3.5e-94 348.6 194 85.6
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 1.3e-93 346.7 220 76.8
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 1.5e-92 343.2 221 76.0
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 1.9e-92 342.8 221 76.9
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 2.5e-92 342.4 221 76.9
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 3.3e-92 342.0 198 84.8
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 9.6e-92 340.5 194 83.0
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 2.8e-91 339.0 212 78.3
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 3.6e-91 338.6 194 83.0
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 8.1e-91 337.4 233 73.4
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 8.1e-91 337.4 194 83.0
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 4.0e-90 335.1 194 82.5
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 9.0e-90 334.0 194 84.0
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 4.5e-89 331.6 300 60.3
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 9.9e-89 330.5 222 73.9
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 9.9e-89 330.5 222 73.9
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 9.9e-89 330.5 198 80.8
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 2.2e-88 329.3 195 81.0
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 6.4e-88 327.8 221 72.9
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 8.4e-88 327.4 221 73.3
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 2.4e-87 325.9 221 73.3
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 2.4e-87 325.9 221 73.3
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 2.4e-87 325.9 223 73.5
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 2.4e-87 325.9 222 73.9
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 2.4e-87 325.9 222 73.9
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 3.2e-87 325.5 221 73.8
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 4.2e-87 325.1 221 72.9
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 1.6e-86 323.2 221 72.9
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 2.1e-86 322.8 194 80.4
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 4.6e-86 321.6 220 71.8
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 1.8e-85 319.7 211 73.9
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 3.0e-85 318.9 221 72.9
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 2.1e-83 312.8 221 72.4
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 8.1e-83 310.8 289 59.2
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 2.0e-81 306.2 223 68.6
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 1.7e-80 303.1 183 80.3
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 2.9e-80 302.4 210 71.9
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 3.8e-80 302.0 197 75.6
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 2.5e-79 299.3 163 89.6
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 3.2e-79 298.9 205 73.2
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 9.3e-79 297.4 193 74.1
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 1.6e-75 286.6 220 65.0
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 1.6e-75 286.6 220 64.1
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 2.1e-75 286.2 214 65.9
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 6.3e-75 284.6 172 79.1
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 2.4e-74 282.7 179 79.3
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 3.1e-74 282.3 214 65.9
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 1.5e-73 280.0 169 81.7
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 2.6e-73 279.3 226 65.5
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 2.6e-73 279.3 226 65.5
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 8.5e-72 274.2 221 65.6
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 2.3e-69 266.2 158 81.6
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 6.7e-69 264.6 220 62.3
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 8.7e-69 264.2 221 59.7
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 2.9e-64 249.2 196 64.8
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 1.1e-63 247.3 194 64.4
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 1.9e-63 246.5 221 55.7
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.2e-62 243.8 169 71.0
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 1.4e-61 240.4 223 55.6
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 2.0e-60 236.5 196 64.3
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 4.4e-52 208.8 162 64.2
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 3.1e-50 202.6 183 57.9
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 1.1e-47 194.1 220 48.2
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 4.7e-46 188.7 152 60.5
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 8.2e-43 177.9 93 87.1
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 2.3e-37 159.8 100 78.0
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 4.0e-37 159.1 222 38.3
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 1.2e-36 157.5 249 42.2
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 2.8e-35 152.9 243 37.4
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 4.8e-35 152.1 84 90.5
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 4.7e-30 135.6 223 37.2
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 1.2e-28 131.0 84 72.6
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 3.7e-27 125.9 141 46.8
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 1.1e-23 114.4 85 70.6
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 8.9e-21 104.8 93 55.9
CAN.G836.41 Capsicum annuum HOM05D005053 ORTHO05D024763 5.2e-13 79.0 143 40.6
Cfa024505 Carpinus fangiana HOM05D005053 ORTHO05D124968 7.0e-10 68.6 205 25.9


User provided reference genes

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