Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0103301 Rosa chinensis HOM05D006676 ORTHO05D008394 1.6e-84 316.2 181 100.0
FAN23G1040 Fragaria x ananassa HOM05D006676 ORTHO05D008394 9.7e-74 280.4 183 85.8
FvH4_1g14550 Fragaria vesca HOM05D006676 ORTHO05D008394 8.2e-73 277.3 183 89.6
FAN19G1679 Fragaria x ananassa HOM05D006676 ORTHO05D008394 3.1e-72 275.4 183 89.1
FAN26G0249 Fragaria x ananassa HOM05D006676 ORTHO05D008394 7.7e-71 270.8 183 88.0
FAN28G2791 Fragaria x ananassa HOM05D006676 ORTHO05D008394 1.6e-68 263.1 183 85.8
Prupe.7G145000 Prunus persica HOM05D006676 ORTHO05D008394 2.1e-60 236.1 187 72.7
MD02G1159200 Malus domestica HOM05D006676 ORTHO05D008394 5.0e-54 214.9 180 70.0
MD00G1067500 Malus domestica HOM05D006676 ORTHO05D008394 1.2e-50 203.8 179 65.9
Manes.13G131900 Manihot esculenta HOM05D006676 ORTHO05D008394 1.5e-50 203.4 179 64.8
Ciclev10026596m.g Citrus clementina HOM05D006676 ORTHO05D008394 1.3e-46 190.3 175 65.7
Dinv26772 Davidia involucrata HOM05D006676 ORTHO05D008394 2.3e-46 189.5 180 63.9
Sed0003061 Sechium edule HOM05D006676 ORTHO05D008394 2.9e-46 189.1 179 62.0
TWI09G1529 Tripterygium wilfordii HOM05D006676 ORTHO05D008394 5.0e-46 188.3 182 64.8
CANSAT01G0168 Cannabis sativa HOM05D006676 ORTHO05D008394 9.5e-45 184.1 181 63.5
COL.COLO4_22185 Corchorus olitorius HOM05D006676 ORTHO05D008394 1.2e-44 183.7 174 63.8
Hma1.2p1_0261F.1_g105020 Hydrangea macrophylla HOM05D006676 ORTHO05D008394 1.6e-44 183.3 182 61.5
QL06p044204 Quercus lobata HOM05D006676 ORTHO05D008394 3.6e-44 182.2 174 61.5
Nn6g32155 Nelumbo nucifera HOM05D006676 ORTHO05D008394 1.0e-43 180.6 179 58.7
Gohir.A02G161300 Gossypium hirsutum HOM05D006676 ORTHO05D008394 1.4e-43 180.3 178 60.1
Gorai.003G019600 Gossypium raimondii HOM05D006676 ORTHO05D008394 4.0e-43 178.7 179 59.8
PGR102G2956 Punica granatum HOM05D006676 ORTHO05D008394 4.0e-43 178.7 176 59.1
Duzib187G2000 Durio zibethinus HOM05D006676 ORTHO05D008394 8.9e-43 177.6 179 62.0
ECA232G0167 Erigeron canadensis HOM05D006676 ORTHO05D008394 2.0e-42 176.4 179 59.2
Lj2g0022488 Lotus japonicus HOM05D006676 ORTHO05D008394 2.0e-42 176.4 180 58.9
CsaV3_2G017150 Cucumis sativus L. HOM05D006676 ORTHO05D008394 2.6e-42 176.0 179 58.1
CiPaw.01G028300 Carya illinoinensis HOM05D006676 ORTHO05D008394 3.4e-42 175.6 178 60.7
ClCG02G013070 Citrullus lanatus HOM05D006676 ORTHO05D008394 3.4e-42 175.6 179 58.7
Gohir.D03G019200 Gossypium hirsutum HOM05D006676 ORTHO05D008394 4.4e-42 175.3 179 59.8
Lalb_Chr05g0213091 Lupinus albus HOM05D006676 ORTHO05D008394 9.8e-42 174.1 180 55.6
Thecc.01G046000 Theobroma cacao HOM05D006676 ORTHO05D008394 9.8e-42 174.1 179 60.3
Potri.007G034600 Populus trichocarpa HOM05D006676 ORTHO05D008394 1.3e-41 173.7 184 56.5
TAR625G0739 Trochodendron aralioides HOM05D006676 ORTHO05D008394 2.8e-41 172.6 179 60.9
Eucgr.H01944 Eucalyptus grandis HOM05D006676 ORTHO05D008394 1.1e-40 170.6 176 58.5
arahy.Tifrunner.gnm1.ann1.TQQ6DV Arachis hypogaea HOM05D006676 ORTHO05D008394 2.4e-40 169.5 186 54.3
Glyma.01G182300 Glycine max HOM05D006676 ORTHO05D008394 3.1e-40 169.1 180 56.1
Glyma.11G060600 Glycine max HOM05D006676 ORTHO05D008394 4.1e-40 168.7 180 56.1
Actinidia12084 Actinidia chinensis HOM05D006676 ORTHO05D008394 7.0e-40 167.9 183 62.3
Phvul.002G023300 Phaseolus vulgaris HOM05D006676 ORTHO05D008394 7.0e-40 167.9 180 53.3
MSTRG.15406 Avicennia marina HOM05D006676 ORTHO05D008394 1.2e-39 167.2 177 57.6
MELO3C020918.2 Cucumis melo HOM05D006676 ORTHO05D008394 1.2e-39 167.2 180 56.1
Sopen02g015580 Solanum pennellii HOM05D006676 ORTHO05D008394 1.6e-39 166.8 179 57.0
arahy.Tifrunner.gnm1.ann1.A5DXZZ Arachis hypogaea HOM05D006676 ORTHO05D008394 3.5e-39 165.6 186 53.2
HanXRQChr15g0489591 Helianthus annuus HOM05D006676 ORTHO05D008394 1.3e-38 163.7 174 60.9
Actinidia36526 Actinidia chinensis HOM05D006676 ORTHO05D008394 2.9e-38 162.5 175 58.9
Sabra07G0030200 Salix brachista HOM05D001814 ORTHO05D001845 2.9e-38 162.5 194 53.1
VMungo1215G3052 Vigna mungo HOM05D006676 ORTHO05D008394 3.3e-37 159.1 179 51.4
arahy.Tifrunner.gnm1.ann1.MI0500 Arachis hypogaea HOM05D006676 ORTHO05D008394 4.3e-37 158.7 188 53.7
Cc07_g05420 Coffea canephora HOM05D006676 ORTHO05D008394 2.8e-36 156.0 175 58.9
Solyc02g065370.3 Solanum lycopersicum HOM05D006676 ORTHO05D008394 1.0e-35 154.1 179 58.7
Oeu032926.1 Olea europaea HOM05D006676 ORTHO05D008394 1.4e-35 153.7 184 53.8
Ca_24806_v3 Cicer arietinum L. HOM05D006676 ORTHO05D008394 6.8e-35 151.4 181 51.9
Hund14112 Selenicereus undatus HOM05D006676 ORTHO05D008394 2.0e-34 149.8 183 56.8
Sc16g0001500 Simmondsia chinensis HOM05D006676 ORTHO05D008394 2.0e-34 149.8 182 53.8
PSO675G6281 Papaver somniferum HOM05D006676 ORTHO05D008394 7.5e-34 147.9 179 48.0
CAN.G93.2 Capsicum annuum HOM05D006676 ORTHO05D008394 9.8e-34 147.5 178 56.2
Duzib147G0589 Durio zibethinus HOM05D006676 ORTHO05D008394 4.9e-33 145.2 177 52.5
PSO541G6387 Papaver somniferum HOM05D006676 ORTHO05D008394 4.9e-33 145.2 179 49.7
EL10Ac6g14836 Beta vulgaris HOM05D006676 ORTHO05D008394 6.4e-33 144.8 183 56.3
TPR.G29856 Trifolium pratense HOM05D006676 ORTHO05D008394 8.3e-33 144.4 199 50.8
Psat2g163920 Pisum sativum HOM05D006676 ORTHO05D008394 1.4e-32 143.7 188 48.9
Nitab4.5_0002126g0070 Nicotiana tabacum HOM05D006676 ORTHO05D008394 1.9e-32 143.3 179 55.3
Rhsim08G0109100 Rhododendron simsii HOM05D006676 ORTHO05D008394 1.9e-32 143.3 276 42.8
Aqoxy6G00953 Aquilegia oxysepala HOM05D006676 ORTHO05D008394 3.2e-32 142.5 184 52.7
Lj7A15T51 Lonicera japonica HOM05D006676 ORTHO05D008394 4.1e-32 142.1 181 53.0
Cfa004230 Carpinus fangiana HOM05D006676 ORTHO05D008394 9.2e-32 141.0 247 41.3
AUR62027231 Chenopodium quinoa HOM05D006676 ORTHO05D008394 4.6e-31 138.7 175 51.4
CDE02G4077 Ceratophyllum demersum HOM05D006676 ORTHO05D008394 1.0e-30 137.5 171 49.1
Nitab4.5_0000090g0080 Nicotiana tabacum HOM05D006676 ORTHO05D008394 5.0e-30 135.2 180 53.9
PGSC0003DMG400002746 Solanum tuberosum HOM05D006676 ORTHO05D008394 8.6e-30 134.4 179 54.2
Cpa.g.sc15.74 Carica papaya HOM05D006676 ORTHO05D008394 2.5e-29 132.9 156 54.5
BolC3t20221H Brassica oleracea HOM05D006676 ORTHO05D008394 1.4e-27 127.1 177 49.7
Medtr5g018550 Medicago truncatula HOM05D006676 ORTHO05D008394 5.2e-27 125.2 182 45.6
DCAR_025672 Daucus carota HOM05D006676 ORTHO05D008394 6.8e-27 124.8 142 55.6
MBI04_g03667_MAGBIO Magnolia biondii HOM05D006676 ORTHO05D008394 6.8e-27 124.8 174 48.3
Thhalv10026327m.g Eutrema salsugineum HOM05D006676 ORTHO05D008394 8.9e-27 124.4 183 42.6
Zm00001eb206480 Zea mays HOM05D006676 ORTHO05D008394 5.8e-26 121.7 169 44.4
BcaC01g00433 Brassica carinata HOM05D006676 ORTHO05D008394 1.3e-25 120.6 179 48.6
C03p79700 Brassica napus HOM05D006676 ORTHO05D008394 1.3e-25 120.6 179 48.6
BraA01t00181Z Brassica rapa HOM05D006676 ORTHO05D008394 1.3e-25 120.6 185 43.2
BcaNung03502 Brassica carinata HOM05D006676 ORTHO05D008394 2.2e-25 119.8 182 42.3
Sp7g34680 Schrenkiella parvula HOM05D006676 ORTHO05D008394 2.2e-25 119.8 185 43.8
vmacro17885 Vaccinium macrocarpon HOM05D006676 ORTHO05D008394 2.9e-25 119.4 230 39.6
AT4G37090 Arabidopsis thaliana HOM05D006676 ORTHO05D008394 4.9e-25 118.6 182 42.3
C01p02080 Brassica napus HOM05D006676 ORTHO05D008394 8.3e-25 117.9 182 42.3
BolC1t00200H Brassica oleracea HOM05D006676 ORTHO05D008394 8.3e-25 117.9 182 42.3
HPP92_004789 Vanilla planifolia HOM05D006676 ORTHO05D008394 3.2e-24 115.9 214 36.0
Carub.0007s0328 Capsella rubella HOM05D006676 ORTHO05D008394 5.4e-24 115.2 188 39.4
CARHR245420 Cardamine hirsuta HOM05D006676 ORTHO05D008394 5.4e-24 115.2 185 40.5
AL7G13870 Arabidopsis lyrata HOM05D006676 ORTHO05D008394 7.0e-24 114.8 184 39.7
Os02g0186700 Oryza sativa ssp. japonica HOM05D006676 ORTHO05D008394 9.2e-24 114.4 181 40.3
AUR62003241 Chenopodium quinoa HOM05D006676 ORTHO05D008394 1.2e-23 114.0 175 46.3
Dinv39914 Davidia involucrata HOM05D006676 ORTHO05D008394 2.1e-23 113.2 97 63.9
A01p01920 Brassica napus HOM05D006676 ORTHO05D008394 1.0e-22 110.9 183 38.3
Ah.02g126080 Amaranthus hybridus HOM05D006676 ORTHO05D008394 3.9e-22 109.0 148 54.1
Peaxi162Scf00019g02117 Petunia axillaris HOM05D006676 ORTHO05D008394 3.9e-22 109.0 175 49.1
Migut.K00838 Erythranthe guttata HOM05D006676 ORTHO05D008394 1.1e-21 107.5 182 44.0
Aa31LG6G13890 Aethionema arabicum HOM05D006676 ORTHO05D008394 1.5e-21 107.1 175 42.9
unitig_749.g13556 Utricularia gibba HOM05D006676 ORTHO05D008394 5.6e-21 105.1 162 45.1
BraA08t34206Z Brassica rapa HOM05D006676 ORTHO05D008394 1.6e-20 103.6 179 40.2
SGA_v2.0_scaffold1G00184 Striga asiatica HOM05D006676 ORTHO05D008394 1.6e-20 103.6 127 55.1
SGA_v2.0_scaffold175G39367 Striga asiatica HOM05D006676 ORTHO05D008394 2.1e-20 103.2 141 50.4
A08p22510 Brassica napus HOM05D006676 ORTHO05D008394 3.6e-20 102.4 179 42.5
GSVIVG01005096001 Vitis vinifera HOM05D006676 ORTHO05D008394 3.6e-20 102.4 97 66.0
GSVIVG01004606001 Vitis vinifera HOM05D006676 ORTHO05D008394 4.7e-20 102.1 97 64.9
THA.LOC104819832 Tarenaya hassleriana HOM05D006676 ORTHO05D008394 9.9e-18 94.4 182 44.0
Sc16g0001490 Simmondsia chinensis HOM05D006676 ORTHO05D008394 9.2e-16 87.8 80 61.2
Aqoxy2G03321 Aquilegia oxysepala HOM05D006676 ORTHO05D008394 3.0e-14 82.8 140 50.0
Aqoxy6G00951 Aquilegia oxysepala HOM05D006676 ORTHO05D008394 3.0e-14 82.8 140 50.0
Haze_15170 Corylus avellana HOM05D006676 ORTHO05D008394 2.8e-12 76.3 189 35.4
MBI15_g03557_MAGBIO Magnolia biondii HOM05D006676 ORTHO05D008394 1.1e-11 74.3 98 46.9
arahy.Tifrunner.gnm1.ann1.9JJG5X Arachis hypogaea HOM05D006676 ORTHO05D008394 1.8e-11 73.6 113 44.2
ATR0800G094 Amborella trichopoda HOM05D006676 ORTHO05D008394 4.9e-09 65.5 122 39.3
ATR0800G049 Amborella trichopoda HOM05D006676 ORTHO05D008394 8.4e-09 64.7 83 41.0
BcaB03g12365 Brassica carinata HOM05D006676 ORTHO05D008394 1.2e-07 60.8 56 46.4
CDE01G0251 Ceratophyllum demersum HOM05D006676 ORTHO05D008394 2.7e-07 59.7 71 47.9


User provided reference genes

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