Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0102901 Rosa chinensis HOM05D008040 ORTHO05D010075 8.0e-282 973.0 459 100.0
FAN26G0836 Fragaria x ananassa HOM05D008040 ORTHO05D010075 4.7e-157 558.5 456 63.6
FvH4_1g14071 Fragaria vesca HOM05D008040 ORTHO05D010075 1.8e-156 556.6 456 63.6
FAN19G2417 Fragaria x ananassa HOM05D008040 ORTHO05D010075 3.0e-156 555.8 456 63.6
FAN23G2403 Fragaria x ananassa HOM05D008040 ORTHO05D010075 1.5e-147 526.9 435 63.0
RcHm_v2.0_Chr2g0102561 Rosa chinensis HOM05D008040 ORTHO05D010075 5.4e-145 518.5 437 61.6
FAN19G2662 Fragaria x ananassa HOM05D008040 ORTHO05D010075 3.6e-133 479.2 325 73.2
FvH4_1g14191 Fragaria vesca HOM05D008040 ORTHO05D010075 3.7e-122 442.6 355 67.3
FAN28G2855 Fragaria x ananassa HOM05D008040 ORTHO05D010075 8.5e-74 282.0 245 59.6
Prupe.7G151200 Prunus persica HOM05D008040 ORTHO05D010075 9.7e-70 268.5 449 40.8
MD12G1211200 Malus domestica HOM05D008040 ORTHO05D010075 3.6e-64 250.0 446 40.4
MD12G1051600 Malus domestica HOM05D008040 ORTHO05D010075 2.8e-61 240.4 410 39.8
FAN28G1672 Fragaria x ananassa HOM05D008040 ORTHO05D010075 4.4e-54 216.5 182 63.2
Sabra08G0010200 Salix brachista HOM05D008040 ORTHO05D010075 1.3e-37 161.8 408 30.1
QL04p017690 Quercus lobata HOM05D008040 ORTHO05D010075 3.1e-36 157.1 432 29.4
QL04p017640 Quercus lobata HOM05D008040 ORTHO05D010075 7.0e-36 156.0 432 29.4
EL10Ac2g04156 Beta vulgaris HOM05D008040 ORTHO05D010075 5.0e-34 149.8 406 30.8
Oeu009728.1 Olea europaea HOM05D008040 ORTHO05D010075 5.2e-31 139.8 293 32.4
AUR62035995 Chenopodium quinoa HOM05D008040 ORTHO05D010075 1.5e-30 138.3 394 29.7
COL.COLO4_12486 Corchorus olitorius HOM05D008040 ORTHO05D010075 2.2e-29 134.4 426 29.1
Oeu009732.1 Olea europaea HOM05D001586 ORTHO05D001543 3.7e-29 133.7 282 30.9
AUR62017713 Chenopodium quinoa HOM05D008040 ORTHO05D010075 6.3e-29 132.9 444 27.3
AUR62008579 Chenopodium quinoa HOM05D008040 ORTHO05D010075 3.1e-28 130.6 412 27.4
CSS0010874 Camellia sinensis var. sinensis HOM05D008040 ORTHO05D010075 4.1e-28 130.2 465 29.2
CSS0016313 Camellia sinensis var. sinensis HOM05D008040 ORTHO05D010075 1.6e-27 128.3 442 29.0
CSS0013591 Camellia sinensis var. sinensis HOM05D008040 ORTHO05D010075 5.9e-27 126.3 428 29.0
MD15G1268400 Malus domestica HOM05D008040 ORTHO05D010075 2.9e-26 124.0 210 41.4
Potri.013G109900 Populus trichocarpa HOM05D008040 ORTHO05D010075 1.5e-25 121.7 413 28.8
SGA_v2.0_scaffold286G47111 Striga asiatica HOM05D008040 ORTHO05D010075 2.1e-24 117.9 445 27.9
COL.COLO4_10414 Corchorus olitorius HOM05D008040 ORTHO05D010075 8.0e-24 115.9 417 27.3
Potri.013G110300 Populus trichocarpa HOM05D008040 ORTHO05D010075 8.0e-24 115.9 413 28.1
TWI77G0815 Tripterygium wilfordii HOM05D008040 ORTHO05D010075 1.0e-23 115.5 468 27.4
CSS0049849 Camellia sinensis var. sinensis HOM05D008040 ORTHO05D010075 2.3e-23 114.4 432 27.5
SGA_v2.0_scaffold147G36326 Striga asiatica HOM05D008040 ORTHO05D010075 5.2e-23 113.2 308 29.2
SGA_v2.0_scaffold286G47115 Striga asiatica HOM05D008040 ORTHO05D010075 6.8e-23 112.8 302 28.8
COL.COLO4_30844 Corchorus olitorius HOM05D008040 ORTHO05D010075 2.6e-22 110.9 406 25.4
COL.COLO4_31564 Corchorus olitorius HOM05D008040 ORTHO05D010075 9.8e-22 109.0 393 26.2
Manes.09G072126 Manihot esculenta HOM05D008040 ORTHO05D010075 1.3e-21 108.6 403 25.6
COL.COLO4_31563 Corchorus olitorius HOM05D008040 ORTHO05D010075 4.9e-21 106.7 394 25.6
vmacro17323 Vaccinium macrocarpon HOM05D008040 ORTHO05D010075 4.9e-21 106.7 223 34.5
COL.COLO4_31566 Corchorus olitorius HOM05D008040 ORTHO05D010075 6.4e-21 106.3 392 26.8
vmacro17325 Vaccinium macrocarpon HOM05D008040 ORTHO05D010075 6.4e-21 106.3 223 34.1
TWI12G0677 Tripterygium wilfordii HOM05D008040 ORTHO05D010075 7.0e-20 102.8 435 24.6
COL.COLO4_10419 Corchorus olitorius HOM05D026534 ORTHO05D010075 2.0e-19 101.3 425 24.2
COL.COLO4_31567 Corchorus olitorius HOM05D008040 ORTHO05D010075 2.0e-19 101.3 405 25.2
TWI12G0410 Tripterygium wilfordii HOM05D008040 ORTHO05D010075 2.0e-19 101.3 455 24.8
DCAR_021781 Daucus carota HOM05D008040 ORTHO05D010075 3.9e-18 97.1 225 29.8
Ciclev10006596m.g Citrus clementina HOM05D008040 ORTHO05D010075 5.0e-18 96.7 284 29.6
Ah.07g206250 Amaranthus hybridus HOM05D008040 ORTHO05D010075 1.5e-17 95.1 244 29.9
Nitab4.5_0005142g0030 Nicotiana tabacum HOM05D008040 ORTHO05D010075 1.9e-17 94.7 271 30.3
Ah.06g196070 Amaranthus hybridus HOM05D008040 ORTHO05D010075 1.2e-16 92.0 291 28.9
Sabra08G0010400 Salix brachista HOM05D008040 ORTHO05D010075 6.2e-16 89.7 264 29.2
PSO339G3463 Papaver somniferum HOM05D008040 ORTHO05D010075 3.1e-15 87.4 270 28.9
Aqoxy6G00905 Aquilegia oxysepala HOM05D008040 ORTHO05D010075 5.2e-15 86.7 421 25.2
Ciclev10026974m.g Citrus clementina HOM05D008040 ORTHO05D010075 5.2e-15 86.7 277 28.5
PSO761G0098 Papaver somniferum HOM05D008040 ORTHO05D010075 8.9e-15 85.9 302 27.2
Ah.02g122840 Amaranthus hybridus HOM05D008040 ORTHO05D010075 7.5e-14 82.8 226 29.2
Potri.008G016300 Populus trichocarpa HOM05D008040 ORTHO05D010075 4.9e-13 80.1 211 31.8
vmacro17324 Vaccinium macrocarpon HOM05D008040 ORTHO05D010075 3.2e-12 77.4 112 42.0
Oeu045297.1 Olea europaea HOM05D008040 ORTHO05D010075 5.4e-12 76.6 254 25.2
PSO017G2897 Papaver somniferum HOM05D008040 ORTHO05D010075 7.8e-11 72.8 246 29.3
Potri.008G016150 Populus trichocarpa HOM05D008040 ORTHO05D010075 1.5e-09 68.6 82 47.6
Rhsim01G0013600 Rhododendron simsii HOM05D000664 ORTHO05D000491 1.5e-09 68.6 95 41.1
Potri.013G109701 Populus trichocarpa HOM05D008040 ORTHO05D010075 2.5e-09 67.8 201 29.9
QL04p017704 Quercus lobata HOM05D008040 ORTHO05D010075 2.5e-09 67.8 148 30.4
CSS0031414 Camellia sinensis var. sinensis HOM05D000664 ORTHO05D000491 5.6e-09 66.6 90 44.4
Aa31LG3G18820 Aethionema arabicum HOM05D000664 ORTHO05D000491 9.5e-09 65.9 238 29.0
unitig_899.g14987 Utricularia gibba HOM05D002420 ORTHO05D002422 9.5e-09 65.9 210 26.2
Aqoxy3G00584 Aquilegia oxysepala HOM05D008040 ORTHO05D010075 1.2e-08 65.5 206 25.7
MD02G1150200 Malus domestica HOM05D002420 ORTHO05D002422 6.2e-08 63.2 187 27.8
Os01g0380800 Oryza sativa ssp. japonica HOM05D009359 ORTHO05D011905 6.2e-08 63.2 253 27.7
Rhsim08G0168000 Rhododendron simsii HOM05D000664 ORTHO05D000491 8.1e-08 62.8 216 26.4
Rhsim01G0013700 Rhododendron simsii HOM05D000664 ORTHO05D000491 1.8e-07 61.6 141 29.8
PGSC0003DMG400019443 Solanum tuberosum HOM05D002420 ORTHO05D002422 1.8e-07 61.6 188 27.7
AL6G17920 Arabidopsis lyrata HOM05D000664 ORTHO05D000491 3.1e-07 60.8 233 28.8
Peaxi162Scf00515g00043 Petunia axillaris HOM05D002420 ORTHO05D002422 3.1e-07 60.8 251 25.1
Os08g0529300 Oryza sativa ssp. japonica HOM05D000664 ORTHO05D000491 5.2e-07 60.1 212 26.9
PGSC0003DMG400040438 Solanum tuberosum HOM05D000664 ORTHO05D000491 5.2e-07 60.1 170 31.8
Ciclev10025746m.g Citrus clementina HOM05D002420 ORTHO05D002422 1.2e-06 58.9 258 24.4
MBI05_g20724_MAGBIO Magnolia biondii HOM05D000664 ORTHO05D000491 1.2e-06 58.9 229 26.2
Rhsim01G0013300 Rhododendron simsii HOM05D000664 ORTHO05D000491 1.2e-06 58.9 98 35.7
ECA246G1437 Erigeron canadensis HOM05D008898 ORTHO05D001155 1.5e-06 58.5 230 25.2
Rhsim01G0016900 Rhododendron simsii HOM05D000664 ORTHO05D000491 2.0e-06 58.2 230 26.1
HanXRQChr01g0029461 Helianthus annuus HOM05D008898 ORTHO05D001155 2.6e-06 57.8 281 23.1
Rhsim01G0018000 Rhododendron simsii HOM05D000664 ORTHO05D000491 2.6e-06 57.8 273 24.5
PGSC0003DMG400014891 Solanum tuberosum HOM05D002420 ORTHO05D002422 2.6e-06 57.8 274 25.5
Rhsim01G0013400 Rhododendron simsii HOM05D000664 ORTHO05D000491 3.4e-06 57.4 98 34.7
FAN02G3914 Fragaria x ananassa HOM05D000664 ORTHO05D000491 4.4e-06 57.0 121 38.0
Zm00001eb116670 Zea mays HOM05D009359 ORTHO05D000491 4.4e-06 57.0 216 25.0
PSO761G0401 Papaver somniferum HOM05D008326 ORTHO05D001155 5.8e-06 56.6 237 26.2
Rhsim03G0249000 Rhododendron simsii HOM05D000664 ORTHO05D000491 5.8e-06 56.6 106 36.8
Sopen02g030120 Solanum pennellii HOM05D002420 ORTHO05D002422 5.8e-06 56.6 273 24.9
Duzib205G1254 Durio zibethinus HOM05D000664 ORTHO05D000491 7.5e-06 56.2 152 30.9
Lj2C966T3 Lonicera japonica HOM05D001729 ORTHO05D001155 7.5e-06 56.2 262 24.4
Rhsim11G0068800 Rhododendron simsii HOM05D000664 ORTHO05D000491 7.5e-06 56.2 147 32.7
Zm00001eb116720 Zea mays HOM05D009359 ORTHO05D000491 7.5e-06 56.2 216 25.0
Zm00001eb115740 Zea mays HOM05D009359 ORTHO05D000491 9.9e-06 55.8 216 25.0


User provided reference genes

Program Settings