Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0102871 Rosa chinensis HOM05D006999 ORTHO05D008936 6.0e-275 950.3 496 100.0
RcHm_v2.0_Chr2g0102951 Rosa chinensis HOM05D006999 ORTHO05D008936 4.8e-248 860.9 516 88.8
FAN23G0790 Fragaria x ananassa HOM05D006999 ORTHO05D008936 8.2e-208 727.2 517 76.0
FvH4_2g07140 Fragaria vesca HOM05D006999 ORTHO05D008936 7.2e-204 714.1 522 75.5
MD15G1270900 Malus domestica HOM05D006999 ORTHO05D008936 2.4e-199 699.1 515 74.6
Prupe.7G147200 Prunus persica HOM05D006999 ORTHO05D008936 1.6e-198 696.4 517 70.4
QL06p044626 Quercus lobata HOM05D006999 ORTHO05D008936 2.2e-176 622.9 518 64.1
CiPaw.01G031400 Carya illinoinensis HOM05D006999 ORTHO05D008936 4.1e-175 618.6 520 65.4
CANSAT01G1763 Cannabis sativa HOM05D006999 ORTHO05D008936 4.0e-170 602.1 519 62.0
Cfa004253 Carpinus fangiana HOM05D006999 ORTHO05D008936 3.9e-165 585.5 517 63.4
arahy.Tifrunner.gnm1.ann1.ZB5P2M Arachis hypogaea HOM05D006999 ORTHO05D008936 5.4e-159 565.1 502 59.2
Manes.13G134700 Manihot esculenta HOM05D006999 ORTHO05D008936 2.1e-158 563.1 518 58.7
Thecc.01G043300 Theobroma cacao HOM05D006999 ORTHO05D008936 2.1e-158 563.1 516 58.1
TWI73G1021 Tripterygium wilfordii HOM05D006999 ORTHO05D008936 1.9e-156 556.6 527 58.8
GSVIVG01019040001 Vitis vinifera HOM05D006999 ORTHO05D008936 1.9e-156 556.6 517 57.3
Potri.005G128600 Populus trichocarpa HOM05D006999 ORTHO05D008936 1.6e-155 553.5 520 60.2
Cpa.g.sc15.132 Carica papaya HOM05D006999 ORTHO05D008936 2.1e-155 553.1 517 57.4
Sabra05G0104700 Salix brachista HOM05D006999 ORTHO05D008936 1.8e-154 550.1 503 58.1
Phvul.002G025400 Phaseolus vulgaris HOM05D006999 ORTHO05D008936 4.0e-154 548.9 520 58.5
VMungo1215G1670 Vigna mungo HOM05D006999 ORTHO05D008936 2.6e-153 546.2 520 57.9
Duzib147G0594 Durio zibethinus HOM05D006999 ORTHO05D008936 5.8e-153 545.0 519 57.0
Gohir.A12G066700 Gossypium hirsutum HOM05D006999 ORTHO05D008936 2.4e-151 539.7 516 57.2
Gohir.D12G067100 Gossypium hirsutum HOM05D006999 ORTHO05D008936 2.4e-151 539.7 516 55.6
Lj2g0003627 Lotus japonicus HOM05D006999 ORTHO05D008936 5.4e-151 538.5 493 58.2
Gorai.008G070500 Gossypium raimondii HOM05D006999 ORTHO05D008936 2.1e-150 536.6 502 56.2
Glyma.11G063000 Glycine max HOM05D006999 ORTHO05D008936 3.3e-148 529.3 520 57.1
Lalb_Chr09g0322731 Lupinus albus HOM05D006999 ORTHO05D008936 1.8e-146 523.5 521 56.0
Ca_24822_v3 Cicer arietinum L. HOM05D006999 ORTHO05D008936 6.9e-146 521.5 527 56.0
FvH4_1g14280 Fragaria vesca HOM05D006999 ORTHO05D008936 8.9e-146 521.2 373 73.7
Dinv29387 Davidia involucrata HOM05D006999 ORTHO05D008936 7.6e-145 518.1 518 55.4
TPR.G34465 Trifolium pratense HOM05D006999 ORTHO05D008936 6.0e-142 508.4 522 55.7
Ciclev10027580m.g Citrus clementina HOM05D006999 ORTHO05D008936 2.3e-141 506.5 498 55.6
Psat2g162640 Pisum sativum HOM05D006999 ORTHO05D008936 3.0e-141 506.1 520 54.6
Medtr5g019030 Medicago truncatula HOM05D006999 ORTHO05D008936 5.6e-140 501.9 492 53.9
Dinv39939 Davidia involucrata HOM05D006999 ORTHO05D008936 1.6e-139 500.4 517 52.8
Aa31LG1G15180 Aethionema arabicum HOM05D006999 ORTHO05D008936 9.0e-138 494.6 513 51.7
Sc03g0001020 Simmondsia chinensis HOM05D006999 ORTHO05D008936 1.9e-135 486.9 500 51.4
THA.LOC104826827 Tarenaya hassleriana HOM05D006999 ORTHO05D008936 3.2e-135 486.1 519 51.4
CARHR281110 Cardamine hirsuta HOM05D006999 ORTHO05D008936 8.7e-133 478.0 513 51.5
Cc05_g07730 Coffea canephora HOM05D006999 ORTHO05D008936 1.5e-132 477.2 495 51.1
AT5G66631 Arabidopsis thaliana HOM05D006999 ORTHO05D008936 1.9e-132 476.9 504 52.2
AL8G44870 Arabidopsis lyrata HOM05D006999 ORTHO05D008936 9.6e-132 474.6 504 52.4
Eucgr.I02485 Eucalyptus grandis HOM05D006999 ORTHO05D008936 1.6e-131 473.8 515 52.2
Sp2g30070 Schrenkiella parvula HOM05D006999 ORTHO05D008936 2.1e-131 473.4 522 50.8
Rhsim02G0225000 Rhododendron simsii HOM05D006999 ORTHO05D008936 3.6e-131 472.6 517 49.1
Nn5g29479 Nelumbo nucifera HOM05D006999 ORTHO05D008936 3.1e-130 469.5 512 52.5
BolC7t43049H Brassica oleracea HOM05D006999 ORTHO05D008936 4.0e-130 469.2 516 50.4
CSS0009159 Camellia sinensis var. sinensis HOM05D006999 ORTHO05D008936 5.3e-130 468.8 497 53.5
BcaB02g10006 Brassica carinata HOM05D006999 ORTHO05D008936 1.5e-129 467.2 518 51.9
CSS0003698 Camellia sinensis var. sinensis HOM05D006999 ORTHO05D008936 2.6e-129 466.5 497 53.3
Oeu049321.1 Olea europaea HOM05D006999 ORTHO05D008936 4.5e-129 465.7 501 51.5
Thhalv10005592m.g Eutrema salsugineum HOM05D006999 ORTHO05D008936 9.9e-129 464.5 513 49.9
TAR381G1039 Trochodendron aralioides HOM05D006999 ORTHO05D008936 9.9e-129 464.5 514 50.6
MSTRG.15411 Avicennia marina HOM05D006999 ORTHO05D008936 4.9e-128 462.2 491 53.0
vmacro00136 Vaccinium macrocarpon HOM05D006999 ORTHO05D008936 1.4e-127 460.7 517 50.3
BcaC06g34726 Brassica carinata HOM05D006999 ORTHO05D008936 1.9e-127 460.3 505 50.5
Nitab4.5_0000090g0200 Nicotiana tabacum HOM05D006999 ORTHO05D008936 2.4e-127 459.9 488 53.1
Oeu049309.1 Olea europaea HOM05D006999 ORTHO05D008936 2.4e-127 459.9 501 51.3
BraA07t29457Z Brassica rapa HOM05D006999 ORTHO05D008936 4.2e-127 459.1 519 50.5
Rhsim02G0229300 Rhododendron simsii HOM05D006999 ORTHO05D008936 7.1e-127 458.4 517 48.4
PGSC0003DMG400001186 Solanum tuberosum HOM05D006999 ORTHO05D008936 3.5e-126 456.1 491 51.7
Aqoxy6G01000 Aquilegia oxysepala HOM05D006999 ORTHO05D008936 1.0e-125 454.5 497 52.5
A07p17310 Brassica napus HOM05D006999 ORTHO05D008936 1.3e-125 454.1 502 50.2
Solyc02g065510.1 Solanum lycopersicum HOM05D006999 ORTHO05D008936 1.3e-125 454.1 491 51.7
Sopen02g015710 Solanum pennellii HOM05D006999 ORTHO05D008936 8.7e-125 451.4 491 50.9
Nitab4.5_0004292g0030 Nicotiana tabacum HOM05D006999 ORTHO05D008936 1.5e-124 450.7 488 52.5
DCAR_026261 Daucus carota HOM05D006999 ORTHO05D008936 3.3e-124 449.5 500 49.2
Migut.K00852 Erythranthe guttata HOM05D006999 ORTHO05D008936 4.8e-123 445.7 489 49.7
CAN.G93.18 Capsicum annuum HOM05D006999 ORTHO05D008936 1.1e-122 444.5 520 48.8
PSO541G6186 Papaver somniferum HOM05D006999 ORTHO05D008936 2.4e-122 443.4 497 48.5
Haze_15147 Corylus avellana HOM05D000909 ORTHO05D000928 3.8e-120 436.0 481 53.4
Peaxi162Scf00019g00154 Petunia axillaris HOM05D006999 ORTHO05D008936 2.5e-119 433.3 488 51.2
SalBow1G0035 Salvia bowleyana HOM05D006999 ORTHO05D008936 2.5e-119 433.3 490 50.2
AUR62008030 Chenopodium quinoa HOM05D006999 ORTHO05D008936 7.1e-119 431.8 515 45.6
Oeu049317.1 Olea europaea HOM05D006999 ORTHO05D008936 1.3e-117 427.6 463 52.3
Ah.02g126330 Amaranthus hybridus HOM05D006999 ORTHO05D008936 6.7e-117 425.2 498 46.2
SGA_v2.0_scaffold62G21537 Striga asiatica HOM05D006999 ORTHO05D008936 1.1e-116 424.5 506 48.0
ECA232G3871 Erigeron canadensis HOM05D006999 ORTHO05D008936 3.1e-114 416.4 494 45.5
Atru.chr3.494 Acer truncatum HOM05D006999 ORTHO05D008936 6.5e-112 408.7 362 59.7
EL10Ac6g14872 Beta vulgaris HOM05D006999 ORTHO05D008936 6.7e-109 398.7 521 41.8
HanXRQChr09g0265111 Helianthus annuus HOM05D006999 ORTHO05D008936 2.8e-107 393.3 518 43.2
C07p25190 Brassica napus HOM05D006999 ORTHO05D008936 5.1e-101 372.5 471 45.2
Actinidia36538 Actinidia chinensis HOM05D006999 ORTHO05D008936 7.4e-100 368.6 526 45.4
MBI16_g10978_MAGBIO Magnolia biondii HOM05D006999 ORTHO05D003554 9.7e-100 368.2 495 43.2
Hma1.2p1_2980F.1_g331210 Hydrangea macrophylla HOM05D006999 ORTHO05D008936 1.4e-98 364.4 366 53.0
Lj4P134T41 Lonicera japonica HOM05D006999 ORTHO05D008936 2.4e-98 363.6 378 49.7
Carub.0008s2788 Capsella rubella HOM05D006999 ORTHO05D008936 3.1e-98 363.2 377 51.7
HPP92_025826 Vanilla planifolia HOM05D006999 ORTHO05D008936 3.3e-92 343.2 494 42.5
Zm00001eb123240 Zea mays HOM05D006999 ORTHO05D008936 3.5e-81 306.6 500 41.8
Os01g0167750 Oryza sativa ssp. japonica HOM05D006999 ORTHO05D008936 1.9e-79 300.8 494 40.9
CDE01G0819 Ceratophyllum demersum HOM05D006999 ORTHO05D008936 2.1e-78 297.4 542 37.1
ATR0782G111 Amborella trichopoda HOM05D006999 ORTHO05D008936 2.7e-78 297.0 563 38.4
Dinv18613 Davidia involucrata HOM05D006999 ORTHO05D008936 2.2e-75 287.3 492 39.8
Dinv26229 Davidia involucrata HOM05D006999 ORTHO05D008936 2.2e-75 287.3 492 39.8
SEGI_35610 Sequoiadendron giganteum HOM05D006999 ORTHO05D008936 1.3e-72 278.1 498 35.5
unitig_748.g8403 Utricularia gibba HOM05D006999 ORTHO05D008936 3.1e-66 256.9 373 40.5
Cfa021547 Carpinus fangiana HOM05D006999 ORTHO05D008936 1.6e-62 244.6 487 35.7
Haze_25752 Corylus avellana HOM05D006999 ORTHO05D008936 1.7e-59 234.6 510 35.1
Glyma.01G179251 Glycine max HOM05D006999 ORTHO05D008936 2.0e-57 227.6 253 54.2
FAN28G3023 Fragaria x ananassa HOM05D006999 ORTHO05D008936 5.4e-50 203.0 174 59.8
Cfa003411 Carpinus fangiana HOM05D006999 ORTHO05D008936 6.4e-43 179.5 428 29.4
COL.COLO4_22153 Corchorus olitorius HOM05D000225 ORTHO05D003554 1.4e-42 178.3 235 46.0
Aa31LG1G15170 Aethionema arabicum HOM05D000909 ORTHO05D008936 2.5e-31 141.0 151 51.0
Glyma.01G179201 Glycine max HOM05D006999 ORTHO05D008936 9.9e-28 129.0 76 84.2
unitig_748.g8404 Utricularia gibba HOM05D006999 ORTHO05D008936 7.1e-26 122.9 97 58.8
FvH4_1g14250 Fragaria vesca HOM05D000909 ORTHO05D000928 2.1e-22 111.3 129 51.2
MD02G1156600 Malus domestica HOM05D006999 ORTHO05D008936 1.4e-18 98.6 112 51.8
AagrBONN_evm.TU.Sc2ySwM_344.143 Anthoceros agrestis HOM05D004079 ORTHO05D008936 6.4e-11 73.2 120 34.2
Pp3c4_14140 Physcomitrium patens HOM05D006999 ORTHO05D008936 3.0e-08 64.3 154 26.6
Ciclev10010964m.g Citrus clementina HOM05D006596 ORTHO05D008497 1.1e-07 62.4 150 28.7
Pp3c16_9420 Physcomitrium patens HOM05D006999 ORTHO05D008936 1.1e-07 62.4 145 29.7
MELO3C004182.2 Cucumis melo HOM05D000424 ORTHO05D002854 1.9e-07 61.6 164 29.9
CSS0034431 Camellia sinensis var. sinensis HOM05D007157 ORTHO05D009045 2.5e-07 61.2 170 30.6
QL07p026858 Quercus lobata HOM05D006596 ORTHO05D008497 4.3e-07 60.5 144 28.5
Actinidia36218 Actinidia chinensis HOM05D007157 ORTHO05D009045 7.4e-07 59.7 138 33.3
MBI05_g00435_MAGBIO Magnolia biondii HOM05D006596 ORTHO05D008497 7.4e-07 59.7 145 29.0
TAR629G1749 Trochodendron aralioides HOM05D007157 ORTHO05D009045 7.4e-07 59.7 180 27.2
Mapoly0001s0055 Marchantia polymorpha HOM05D004079 ORTHO05D005437 1.6e-06 58.5 161 25.5
Sed0004899 Sechium edule HOM05D000424 ORTHO05D002854 1.6e-06 58.5 162 29.0
BcaC07g40729 Brassica carinata HOM05D000424 ORTHO05D002854 2.1e-06 58.2 162 27.8
ClCG02G014900 Citrullus lanatus HOM05D000424 ORTHO05D002854 2.1e-06 58.2 164 28.7
Gohir.A05G336500 Gossypium hirsutum HOM05D007157 ORTHO05D009045 2.8e-06 57.8 178 27.5
Gohir.D11G332300 Gossypium hirsutum HOM05D006596 ORTHO05D008497 2.8e-06 57.8 160 30.6
C08p37300 Brassica napus HOM05D000424 ORTHO05D002854 3.7e-06 57.4 162 27.8
BolC8t51308H Brassica oleracea HOM05D000424 ORTHO05D002854 3.7e-06 57.4 162 27.8
Sabra14G0089900 Salix brachista HOM05D000424 ORTHO05D002854 3.7e-06 57.4 196 26.5
CsaV3_2G007110 Cucumis sativus L. HOM05D000424 ORTHO05D002854 6.2e-06 56.6 164 28.0
BcaC07g42764 Brassica carinata HOM05D000424 ORTHO05D002854 8.2e-06 56.2 149 28.9


User provided reference genes

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