Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0102431 Rosa chinensis HOM05D002452 ORTHO05D006766 1.8e-230 802.4 445 100.0
RcHm_v2.0_Chr6g0298781 Rosa chinensis HOM05D000762 ORTHO05D002234 7.0e-41 172.6 132 69.7
FAN27G3474 Fragaria x ananassa HOM05D000762 ORTHO05D002234 9.8e-35 152.1 135 63.0
FAN15G0112 Fragaria x ananassa HOM05D000762 ORTHO05D002234 2.9e-34 150.6 134 62.7
FvH4_2g29760 Fragaria vesca HOM05D000762 ORTHO05D002234 5.9e-32 142.9 132 60.6
FAN24G1958 Fragaria x ananassa HOM05D000762 ORTHO05D002234 1.7e-31 141.4 132 59.8
Prupe.1G472000 Prunus persica HOM05D000762 ORTHO05D002234 1.9e-25 121.3 136 48.5
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 4.3e-22 110.2 143 50.3
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 3.6e-21 107.1 143 49.7
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 3.6e-21 107.1 143 49.7
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 3.6e-21 107.1 143 49.7
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 8.9e-20 102.4 130 50.0
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 3.4e-19 100.5 128 49.2
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 4.4e-19 100.1 136 46.3
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 5.8e-19 99.8 130 50.0
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 3.2e-17 94.0 92 55.4
MD15G1118800 Malus domestica HOM05D000762 ORTHO05D002234 3.2e-17 94.0 149 39.6
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 6.2e-13 79.7 168 35.7
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 4.0e-12 77.0 86 53.5
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 5.2e-12 76.6 92 51.1
MD03G1244600 Malus domestica HOM05D002452 ORTHO05D006766 6.8e-12 76.3 63 61.9
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 2.0e-11 74.7 86 52.3
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 1.7e-10 71.6 73 58.9
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 2.2e-10 71.2 78 53.8
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 4.9e-10 70.1 68 52.9
QL12p031752 Quercus lobata HOM05D000762 ORTHO05D002234 1.4e-09 68.6 142 35.9
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 1.9e-09 68.2 93 43.0
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 4.1e-09 67.0 69 58.0
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 1.6e-08 65.1 93 44.1
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 1.6e-08 65.1 69 55.1
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 1.6e-08 65.1 68 51.5
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 2.1e-08 64.7 67 58.2
Haze_21590 Corylus avellana HOM05D000762 ORTHO05D002234 4.6e-08 63.5 116 37.9
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 7.8e-08 62.8 75 48.0
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 1.0e-07 62.4 93 45.2
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 1.0e-07 62.4 95 41.1
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 1.3e-07 62.0 93 44.1
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 1.7e-07 61.6 82 48.8
Cfa013193 Carpinus fangiana HOM05D000762 ORTHO05D002234 2.3e-07 61.2 112 39.3
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 3.0e-07 60.8 69 53.6
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 3.9e-07 60.5 93 43.0
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 3.9e-07 60.5 93 43.0
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 3.9e-07 60.5 135 37.8
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 8.6e-07 59.3 68 48.5
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 8.6e-07 59.3 69 55.1
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 8.6e-07 59.3 72 48.6
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 1.9e-06 58.2 116 40.5
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 1.9e-06 58.2 158 30.4
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 1.9e-06 58.2 72 47.2
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.5e-06 57.8 92 39.1
Glyma.13G268300 Glycine max HOM05D002452 ORTHO05D006766 3.3e-06 57.4 74 45.9
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 3.3e-06 57.4 134 33.6
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 4.3e-06 57.0 94 41.5
Eucgr.F01317 Eucalyptus grandis HOM05D002452 ORTHO05D006766 7.3e-06 56.2 101 41.6
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 7.3e-06 56.2 93 41.9
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 9.6e-06 55.8 73 43.8


User provided reference genes

Program Settings