Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 0.0e+00 1364.7 695 100.0
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 0.0e+00 1185.2 695 87.3
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 0.0e+00 1168.7 695 86.8
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 0.0e+00 1155.2 716 84.6
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 0.0e+00 1153.3 719 84.1
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 0.0e+00 1139.8 696 84.8
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 6.1e-225 784.6 712 63.3
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 1.1e-218 763.8 708 59.6
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 1.9e-173 613.6 721 51.2
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 2.7e-172 609.8 481 70.5
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 3.3e-170 602.8 720 50.3
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 7.3e-170 601.7 723 50.8
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 3.2e-165 586.3 723 49.1
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 3.2e-165 586.3 726 48.5
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 1.5e-162 577.4 723 48.1
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 6.2e-161 572.0 722 49.2
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 5.8e-159 565.5 733 47.9
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.7e-158 563.9 735 47.3
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 6.0e-156 555.4 728 47.5
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 6.0e-156 555.4 739 46.1
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 6.6e-155 552.0 728 47.4
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 4.3e-154 549.3 719 46.6
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 1.3e-153 547.7 729 48.1
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 2.1e-153 547.0 729 48.1
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 2.1e-153 547.0 723 46.7
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 4.0e-152 542.7 717 47.8
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 9.0e-152 541.6 717 48.5
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 6.4e-150 535.4 728 46.7
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 9.3e-149 531.6 724 44.8
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 1.6e-148 530.8 714 46.6
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 1.9e-146 523.9 719 46.0
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 7.4e-146 521.9 741 45.9
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 9.9e-143 511.5 722 44.9
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 1.3e-142 511.1 715 47.7
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 3.8e-142 509.6 706 46.3
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 7.9e-140 501.9 652 46.9
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 1.0e-139 501.5 718 43.9
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 6.7e-139 498.8 633 48.2
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 8.1e-137 491.9 731 43.5
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 5.8e-135 485.7 739 42.6
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 2.9e-134 483.4 724 44.8
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 2.9e-134 483.4 678 43.8
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 4.9e-134 482.6 726 44.5
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 2.7e-132 476.9 724 43.4
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 3.5e-132 476.5 555 51.0
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 6.0e-132 475.7 720 44.9
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 3.0e-131 473.4 713 42.2
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 3.9e-131 473.0 715 42.7
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 6.7e-131 472.2 716 44.7
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 6.7e-131 472.2 723 43.4
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.1e-130 471.5 709 44.1
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 3.3e-130 469.9 722 42.4
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 7.6e-127 458.8 709 42.3
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 1.0e-126 458.4 721 41.7
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 1.3e-126 458.0 714 42.4
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 5.0e-126 456.1 714 41.9
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 1.9e-125 454.1 713 42.5
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 2.7e-124 450.3 717 41.7
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 4.6e-124 449.5 717 40.6
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 1.0e-123 448.4 706 40.7
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 1.3e-123 448.0 592 43.9
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 3.0e-123 446.8 644 42.2
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 6.7e-123 445.7 715 40.4
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 7.4e-122 442.2 728 41.5
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 2.2e-121 440.7 641 42.9
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 4.1e-120 436.4 785 40.1
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 5.3e-120 436.0 730 40.3
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 5.9e-119 432.6 463 56.6
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 3.8e-118 429.9 714 42.0
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 1.9e-117 427.6 714 41.2
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 2.5e-117 427.2 587 43.3
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 3.6e-116 423.3 737 39.6
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 3.6e-116 423.3 737 39.6
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 9.7e-114 415.2 744 39.2
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 4.8e-113 412.9 733 38.7
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 4.1e-112 409.8 738 41.2
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 5.3e-112 409.5 641 41.0
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 6.9e-112 409.1 723 40.1
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 2.0e-111 407.5 719 39.6
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 1.7e-110 404.4 711 41.4
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 4.2e-109 399.8 704 37.9
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 4.2e-109 399.8 558 44.4
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 4.2e-109 399.8 652 41.4
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 9.4e-109 398.7 593 42.2
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 4.7e-108 396.4 717 40.6
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 7.9e-108 395.6 682 39.1
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 1.8e-107 394.4 707 38.6
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 3.7e-105 386.7 682 39.4
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 1.1e-104 385.2 582 42.3
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 2.4e-104 384.0 727 37.7
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 3.5e-103 380.2 709 37.4
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 6.5e-102 375.9 681 39.8
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 7.2e-101 372.5 659 39.9
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 4.7e-100 369.8 710 37.2
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 1.1e-98 365.2 703 38.3
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 5.5e-93 346.3 590 40.2
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 1.2e-90 338.6 507 43.6
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 4.1e-88 330.1 544 40.6
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 3.5e-87 327.0 507 40.2
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 8.0e-84 315.8 484 42.4
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 3.0e-83 313.9 871 32.8
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 8.8e-83 312.4 499 43.9
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 4.4e-82 310.1 751 34.1
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 3.1e-80 303.9 756 32.4
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 3.1e-80 303.9 664 33.1
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 4.1e-80 303.5 765 33.2
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 1.6e-79 301.6 611 35.4
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 1.3e-78 298.5 645 34.9
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.6e-76 291.6 533 38.5
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 8.9e-75 285.8 529 36.7
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 8.9e-75 285.8 696 32.6
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 2.6e-74 284.3 672 32.4
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 2.2e-73 281.2 518 37.6
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 4.6e-71 273.5 711 31.8
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 4.6e-71 273.5 721 31.8
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 9.5e-69 265.8 482 40.5
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 9.8e-66 255.8 441 39.0
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 1.7e-65 255.0 367 42.5
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 9.2e-64 249.2 419 41.5
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 4.6e-63 246.9 614 31.9
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 7.1e-56 223.0 359 38.7
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 9.5e-53 212.6 272 49.6
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 2.2e-49 201.4 698 29.4
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.0e-46 192.6 446 33.9
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 1.8e-43 181.8 242 43.8
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 8.9e-43 179.5 184 51.6
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 9.9e-42 176.0 231 45.5
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 3.8e-41 174.1 241 45.2
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 1.1e-40 172.6 243 47.3
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 3.3e-37 161.0 385 31.9
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 7.3e-37 159.8 239 48.1
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 2.4e-35 154.8 224 39.7
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 2.2e-33 148.3 242 38.8
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 6.0e-31 140.2 139 53.2
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.3e-30 139.0 270 36.7
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 1.3e-30 139.0 342 32.5
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 9.6e-29 132.9 233 38.2
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 5.5e-24 117.1 364 31.6
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 9.3e-24 116.3 206 34.5
Glyma.01G232951 Glycine max HOM05D001514 ORTHO05D002956 1.6e-20 105.5 223 35.0
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 2.1e-20 105.1 104 54.8
Oeu014919.1 Olea europaea HOM05D004086 ORTHO05D004641 1.1e-19 102.8 634 25.9
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 2.4e-19 101.7 131 42.0
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 5.3e-19 100.5 548 24.8
BcaB07g34160 Brassica carinata HOM05D004086 ORTHO05D004641 2.0e-18 98.6 139 43.2
SHI06749 Sapria himalayana HOM05D004086 ORTHO05D004641 2.6e-18 98.2 86 51.2
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 1.0e-17 96.3 141 43.3
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 1.3e-17 95.9 84 54.8
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 3.8e-17 94.4 197 36.0
SHI06750 Sapria himalayana HOM05D004086 ORTHO05D004641 4.9e-17 94.0 158 34.8
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 3.2e-16 91.3 80 55.0
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.3e-14 85.9 85 57.6
SEGI_38277 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 1.3e-14 85.9 183 34.4
MELO3C034917.2 Cucumis melo HOM05D004086 ORTHO05D004641 1.5e-13 82.4 66 56.1
QL06p009809 Quercus lobata HOM05D004086 ORTHO05D004641 3.3e-13 81.3 80 55.0
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 8.2e-12 76.6 118 40.7
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 2.4e-11 75.1 202 32.2
Sc17g0002700 Simmondsia chinensis HOM05D004086 ORTHO05D004641 4.1e-11 74.3 97 46.4
SEGI_37045 Sequoiadendron giganteum HOM05D037714 ORTHO05D004641 1.2e-10 72.8 143 34.3
HPP92_026150 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.3e-09 69.3 102 43.1
Ca_29956_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 2.5e-08 65.1 96 41.7
CARHR050700 Cardamine hirsuta HOM05D004086 ORTHO05D004641 4.2e-08 64.3 67 49.3
Zm00001eb176250 Zea mays HOM05D004086 ORTHO05D004641 5.5e-08 63.9 179 32.4
PRCOL_00000416 Prasinoderma coloniale HOM05D004086 ORTHO05D004641 7.2e-08 63.5 385 24.9


User provided reference genes

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