Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0101741 Rosa chinensis HOM05D006100 ORTHO05D007539 3.2e-69 265.0 137 100.0
FAN19G2702 Fragaria x ananassa HOM05D006100 ORTHO05D007539 2.5e-50 202.2 137 77.4
FvH4_1g13380 Fragaria vesca HOM05D006100 ORTHO05D007539 1.1e-48 196.8 137 75.9
FAN23G1739 Fragaria x ananassa HOM05D006100 ORTHO05D007539 2.2e-46 189.1 137 73.0
FAN26G0501 Fragaria x ananassa HOM05D006100 ORTHO05D007539 3.6e-44 181.8 137 70.8
Prupe.7G153900 Prunus persica HOM05D006100 ORTHO05D007539 5.2e-27 124.8 139 54.7
MD15G1262900 Malus domestica HOM05D006100 ORTHO05D007539 8.8e-27 124.0 137 53.3
MD02G1148600 Malus domestica HOM05D006100 ORTHO05D007539 5.7e-26 121.3 139 55.4
Duzib147G1001 Durio zibethinus HOM05D006100 ORTHO05D007539 1.3e-25 120.2 130 48.5
TWI09G0021 Tripterygium wilfordii HOM05D006100 ORTHO05D007539 1.7e-25 119.8 135 53.3
Haze_15098 Corylus avellana HOM05D006100 ORTHO05D007539 2.2e-25 119.4 123 54.5
COL.COLO4_22086 Corchorus olitorius HOM05D006100 ORTHO05D007539 3.7e-25 118.6 135 54.8
Thecc.01G036600 Theobroma cacao HOM05D006100 ORTHO05D007539 1.4e-24 116.7 135 50.4
Dinv39980 Davidia involucrata HOM05D006100 ORTHO05D007539 9.1e-24 114.0 131 51.9
FvH4_1g13390 Fragaria vesca HOM05D006100 ORTHO05D007539 9.1e-24 114.0 134 56.0
FAN19G3207 Fragaria x ananassa HOM05D006100 ORTHO05D007539 9.1e-24 114.0 134 56.0
FAN28G0382 Fragaria x ananassa HOM05D006100 ORTHO05D007539 9.1e-24 114.0 75 76.0
THA.LOC104821276 Tarenaya hassleriana HOM05D006100 ORTHO05D007539 9.1e-24 114.0 134 51.5
arahy.Tifrunner.gnm1.ann1.L1JEHI Arachis hypogaea HOM05D006100 ORTHO05D007539 2.0e-23 112.8 136 47.8
RcHm_v2.0_Chr2g0101751 Rosa chinensis HOM05D006100 ORTHO05D007539 4.5e-23 111.7 134 51.5
Phvul.002G029900 Phaseolus vulgaris HOM05D006100 ORTHO05D007539 1.7e-22 109.8 133 49.6
arahy.Tifrunner.gnm1.ann1.IKK69W Arachis hypogaea HOM05D006100 ORTHO05D007539 2.2e-22 109.4 136 47.1
FAN28G1903 Fragaria x ananassa HOM05D006100 ORTHO05D007539 2.2e-22 109.4 136 51.5
Lj2g0016254 Lotus japonicus HOM05D006100 ORTHO05D007539 2.2e-22 109.4 130 50.0
QL06p045927 Quercus lobata HOM05D006100 ORTHO05D007539 2.2e-22 109.4 119 51.3
AL8G44670 Arabidopsis lyrata HOM05D006100 ORTHO05D007539 5.0e-22 108.2 132 50.0
Psat2g159960 Pisum sativum HOM05D006100 ORTHO05D007539 1.1e-21 107.1 138 50.7
Aqoxy6G01099 Aquilegia oxysepala HOM05D006100 ORTHO05D007539 1.9e-21 106.3 136 44.9
Lalb_Chr09g0322441 Lupinus albus HOM05D006100 ORTHO05D007539 3.2e-21 105.5 134 50.7
VMungo1215G0978 Vigna mungo HOM05D006100 ORTHO05D007539 3.2e-21 105.5 130 50.0
HanXRQChr11g0324821 Helianthus annuus HOM05D006100 ORTHO05D007539 5.5e-21 104.8 135 46.7
Gohir.A10G094900 Gossypium hirsutum HOM05D006100 ORTHO05D007539 9.4e-21 104.0 132 47.0
Sp2g29900 Schrenkiella parvula HOM05D006100 ORTHO05D007539 1.2e-20 103.6 130 50.0
Rhsim08G0115500 Rhododendron simsii HOM05D006100 ORTHO05D007539 1.6e-20 103.2 133 45.9
Lsat_1_v5_gn_4_148381 Lactuca sativa HOM05D006100 ORTHO05D007539 2.1e-20 102.8 137 46.7
MD15G1262800 Malus domestica HOM05D006100 ORTHO05D007539 2.7e-20 102.4 81 64.2
vmacro17841 Vaccinium macrocarpon HOM05D006100 ORTHO05D007539 3.6e-20 102.1 76 64.5
Ciclev10026748m.g Citrus clementina HOM05D006100 ORTHO05D007539 4.7e-20 101.7 139 47.5
AT5G66780 Arabidopsis thaliana HOM05D006100 ORTHO05D007539 6.1e-20 101.3 132 49.2
Cfa004303 Carpinus fangiana HOM05D006100 ORTHO05D007539 6.1e-20 101.3 141 47.5
CSS0018588 Camellia sinensis var. sinensis HOM05D006100 ORTHO05D007539 1.0e-19 100.5 131 45.0
BcaC06g34744 Brassica carinata HOM05D006100 ORTHO05D007539 1.4e-19 100.1 135 48.1
C07p25000 Brassica napus HOM05D006100 ORTHO05D007539 1.4e-19 100.1 135 48.1
CiPaw.02G017200 Carya illinoinensis HOM05D006100 ORTHO05D007539 1.4e-19 100.1 84 63.1
Duzib264G0645 Durio zibethinus HOM05D006100 ORTHO05D007539 1.4e-19 100.1 75 61.3
Medtr5g020060 Medicago truncatula HOM05D006100 ORTHO05D007539 1.4e-19 100.1 130 48.5
Atru.chr3.567 Acer truncatum HOM05D006100 ORTHO05D007539 2.3e-19 99.4 136 48.5
Actinidia19182 Actinidia chinensis HOM05D006100 ORTHO05D007539 2.3e-19 99.4 138 45.7
CiPaw.01G037400 Carya illinoinensis HOM05D006100 ORTHO05D007539 3.0e-19 99.0 107 51.4
Thhalv10005154m.g Eutrema salsugineum HOM05D006100 ORTHO05D007539 3.0e-19 99.0 130 50.0
ECA232G0790 Erigeron canadensis HOM05D006100 ORTHO05D007539 4.0e-19 98.6 118 49.2
GSVIVG01018974001 Vitis vinifera HOM05D006100 ORTHO05D007539 5.2e-19 98.2 110 50.9
BolC7t43033H Brassica oleracea HOM05D006100 ORTHO05D007539 6.8e-19 97.8 135 47.4
CARHR280920 Cardamine hirsuta HOM05D006100 ORTHO05D007539 8.8e-19 97.4 130 46.2
Nn5g29589 Nelumbo nucifera HOM05D006100 ORTHO05D007539 1.2e-18 97.1 134 45.5
BcaB07g29655 Brassica carinata HOM05D006100 ORTHO05D007539 2.0e-18 96.3 130 47.7
CANSAT01G1084 Cannabis sativa HOM05D006100 ORTHO05D007539 2.6e-18 95.9 104 49.0
Carub.0008s2773 Capsella rubella HOM05D006100 ORTHO05D007539 2.6e-18 95.9 103 52.4
MD02G1148700 Malus domestica HOM05D006100 ORTHO05D007539 5.7e-18 94.7 134 47.0
Gohir.A11G184500 Gossypium hirsutum HOM05D006100 ORTHO05D007539 7.5e-18 94.4 108 48.1
Nitab4.5_0003233g0010 Nicotiana tabacum HOM05D006100 ORTHO05D007539 1.3e-17 93.6 134 44.0
BcaB02g09991 Brassica carinata HOM05D006100 ORTHO05D007539 1.7e-17 93.2 132 44.7
A07p17150 Brassica napus HOM05D006100 ORTHO05D007539 1.7e-17 93.2 130 49.2
BraA07t29442Z Brassica rapa HOM05D006100 ORTHO05D007539 1.7e-17 93.2 130 49.2
PGR119G0418 Punica granatum HOM05D006100 ORTHO05D007539 1.7e-17 93.2 115 50.4
Sed0016253 Sechium edule HOM05D006100 ORTHO05D007539 2.8e-17 92.4 137 44.5
PSO675G2321 Papaver somniferum HOM05D006100 ORTHO05D007539 1.1e-16 90.5 149 45.0
PGR102G3048 Punica granatum HOM05D006100 ORTHO05D007539 1.1e-16 90.5 101 52.5
TAR376G0804 Trochodendron aralioides HOM05D001794 ORTHO05D004177 1.4e-16 90.1 114 48.2
BcaC03g18400 Brassica carinata HOM05D006100 ORTHO05D007539 2.4e-16 89.4 69 60.9
FAN23G0264 Fragaria x ananassa HOM05D006100 ORTHO05D007539 2.4e-16 89.4 91 56.0
Gohir.D10G093000 Gossypium hirsutum HOM05D006100 ORTHO05D007539 3.1e-16 89.0 133 43.6
Oeu009416.1 Olea europaea HOM05D006100 ORTHO05D007539 5.3e-16 88.2 133 42.1
C02p64790 Brassica napus HOM05D006100 ORTHO05D007539 7.0e-16 87.8 65 64.6
Prupe.7G153800 Prunus persica HOM05D006100 ORTHO05D007539 7.0e-16 87.8 135 43.0
BolC2t12540H Brassica oleracea HOM05D006100 ORTHO05D007539 9.1e-16 87.4 63 65.1
Aa31LG1G15340 Aethionema arabicum HOM05D006100 ORTHO05D007539 1.2e-15 87.0 70 60.0
Os03g0723400 Oryza sativa ssp. japonica HOM05D006100 ORTHO05D007539 1.2e-15 87.0 74 56.8
PSO541G1538 Papaver somniferum HOM05D006100 ORTHO05D007539 1.2e-15 87.0 151 43.7
Glyma.11G067900 Glycine max HOM05D006100 ORTHO05D007539 1.6e-15 86.7 131 44.3
Oeu041448.1 Olea europaea HOM05D006100 ORTHO05D007539 1.6e-15 86.7 134 42.5
Cpa.g.sc6.110 Carica papaya HOM05D006100 ORTHO05D007539 4.5e-15 85.1 137 44.5
ClCG01G019510 Citrullus lanatus HOM05D006100 ORTHO05D007539 4.5e-15 85.1 137 40.9
A02p44400 Brassica napus HOM05D006100 ORTHO05D007539 5.9e-15 84.7 131 43.5
BraA02t09357Z Brassica rapa HOM05D006100 ORTHO05D007539 5.9e-15 84.7 131 43.5
Eucgr.I02450 Eucalyptus grandis HOM05D006100 ORTHO05D007539 1.3e-14 83.6 113 45.1
FAN26G1330 Fragaria x ananassa HOM05D006100 ORTHO05D007539 1.7e-14 83.2 62 64.5
Nitab4.5_0001385g0150 Nicotiana tabacum HOM05D006100 ORTHO05D007539 2.2e-14 82.8 135 44.4
MSTRG.2759 Avicennia marina HOM05D006100 ORTHO05D007539 2.9e-14 82.4 134 38.8
Nitab4.5_0000434g0150 Nicotiana tabacum HOM05D006100 ORTHO05D007539 2.9e-14 82.4 136 46.3
PGSC0003DMG400015478 Solanum tuberosum HOM05D006100 ORTHO05D007539 2.5e-13 79.3 130 41.5
Solyc02g062770.2 Solanum lycopersicum HOM05D006100 ORTHO05D007539 3.2e-13 79.0 132 40.9
CsaV3_6G046200 Cucumis sativus L. HOM05D006100 ORTHO05D007539 4.2e-13 78.6 135 41.5
Migut.H00995 Erythranthe guttata HOM05D006100 ORTHO05D007539 7.2e-13 77.8 142 43.0
Glyma.16G140500 Glycine max HOM05D006100 ORTHO05D007539 1.2e-12 77.0 129 38.8
Manes.01G135000 Manihot esculenta HOM05D006100 ORTHO05D007539 1.2e-12 77.0 118 45.8
Peaxi162Scf00008g03716 Petunia axillaris HOM05D006100 ORTHO05D007539 1.6e-12 76.6 65 58.5
Sopen02g013800 Solanum pennellii HOM05D006100 ORTHO05D007539 2.7e-12 75.9 132 38.6
CSS0029658 Camellia sinensis var. sinensis HOM05D006100 ORTHO05D007539 4.7e-12 75.1 104 40.4
Nitab4.5_0000136g0440 Nicotiana tabacum HOM05D006100 ORTHO05D007539 8.0e-12 74.3 164 36.0
SGA_v2.0_scaffold276G46633 Striga asiatica HOM05D006100 ORTHO05D007539 1.0e-11 73.9 142 35.9
CDE01G0731 Ceratophyllum demersum HOM05D006100 ORTHO05D007539 5.2e-11 71.6 75 50.7
TPR.G34229 Trifolium pratense HOM05D006100 ORTHO05D007539 1.5e-10 70.1 119 39.5
AUR62004046 Chenopodium quinoa HOM05D006100 ORTHO05D007539 2.6e-10 69.3 137 41.6
MBI16_g38642_MAGBIO Magnolia biondii HOM05D006100 ORTHO05D007539 2.6e-10 69.3 87 44.8
Peaxi162Scf00515g00519 Petunia axillaris HOM05D006100 ORTHO05D007539 2.6e-10 69.3 135 40.0
CAN.G358.97 Capsicum annuum HOM05D006100 ORTHO05D007539 3.4e-10 68.9 131 39.7
EL10Ac6g15568 Beta vulgaris HOM05D006100 ORTHO05D007539 4.4e-10 68.6 134 41.0
Gorai.011G102200 Gossypium raimondii HOM05D006100 ORTHO05D007539 4.4e-10 68.6 98 42.9
Oeu033643.1 Olea europaea HOM05D006100 ORTHO05D007539 4.4e-10 68.6 52 55.8
HanXRQChr16g0530351 Helianthus annuus HOM05D006100 ORTHO05D007539 2.2e-09 66.2 128 34.4
unitig_21.g20955 Utricularia gibba HOM05D003234 ORTHO05D003635 2.2e-09 66.2 109 45.0
Solyc02g085330.1 Solanum lycopersicum HOM05D006100 ORTHO05D007539 3.7e-09 65.5 103 42.7
Sopen02g030020 Solanum pennellii HOM05D006100 ORTHO05D007539 1.1e-08 63.9 103 41.7
AUR62007561 Chenopodium quinoa HOM05D006100 ORTHO05D007539 1.4e-08 63.5 135 37.8
unitig_899.g14492 Utricularia gibba HOM05D006100 ORTHO05D007539 3.1e-08 62.4 112 39.3
THA.LOC104819790 Tarenaya hassleriana HOM05D006100 ORTHO05D007539 1.6e-07 60.1 108 38.9
MELO3C007824.2 Cucumis melo HOM05D006100 ORTHO05D007539 3.5e-07 58.9 97 42.3
Lj4g0020328 Lotus japonicus HOM05D006100 ORTHO05D007539 4.5e-07 58.5 129 35.7


User provided reference genes

Program Settings