Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 2.9e-148 528.5 255 100.0
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 2.3e-73 279.6 137 98.5
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 8.6e-60 234.6 265 54.3
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.7e-55 220.3 201 58.7
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 4.9e-55 218.8 201 58.7
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 6.4e-55 218.4 201 58.7
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 3.2e-54 216.1 200 57.0
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 2.1e-53 213.4 203 57.1
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 2.7e-53 213.0 200 58.5
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 3.5e-53 212.6 234 53.8
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 7.8e-53 211.5 199 57.3
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 7.8e-53 211.5 199 57.3
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 7.8e-53 211.5 197 54.8
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 3.0e-52 209.5 204 54.4
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 6.6e-52 208.4 199 55.8
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 1.1e-51 207.6 198 55.6
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 1.5e-51 207.2 201 54.7
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 1.9e-51 206.8 199 57.3
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 3.3e-51 206.1 200 55.0
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 4.3e-51 205.7 197 53.3
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 5.6e-51 205.3 197 55.8
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 5.6e-51 205.3 203 55.2
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 2.8e-50 203.0 202 52.0
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 4.7e-50 202.2 204 55.9
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 4.7e-50 202.2 197 53.8
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 6.2e-50 201.8 198 56.6
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 6.2e-50 201.8 202 54.0
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 6.2e-50 201.8 198 55.1
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 8.1e-50 201.4 197 54.3
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 8.1e-50 201.4 191 52.4
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 8.1e-50 201.4 203 53.7
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 1.4e-49 200.7 205 52.2
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 1.4e-49 200.7 199 54.8
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 1.8e-49 200.3 215 51.2
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 2.3e-49 199.9 199 54.3
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 3.1e-49 199.5 197 53.8
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 3.1e-49 199.5 197 53.8
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 5.2e-49 198.7 191 53.9
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 5.2e-49 198.7 191 53.4
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 5.2e-49 198.7 205 53.7
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 5.2e-49 198.7 195 54.4
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 5.2e-49 198.7 191 52.4
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 6.8e-49 198.4 195 54.4
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 6.8e-49 198.4 191 52.4
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 6.8e-49 198.4 198 55.1
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 8.9e-49 198.0 200 53.0
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 1.5e-48 197.2 197 52.3
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 1.5e-48 197.2 195 53.8
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 1.5e-48 197.2 195 54.4
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 1.5e-48 197.2 197 52.8
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 2.0e-48 196.8 206 52.9
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 2.0e-48 196.8 197 53.8
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 2.6e-48 196.4 210 51.4
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 3.4e-48 196.1 200 52.5
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 3.4e-48 196.1 202 52.5
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 3.4e-48 196.1 198 54.5
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 4.4e-48 195.7 191 53.4
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 4.4e-48 195.7 202 55.0
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 4.4e-48 195.7 203 54.7
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 5.8e-48 195.3 191 52.4
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 5.8e-48 195.3 205 51.7
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 5.8e-48 195.3 201 53.7
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 5.8e-48 195.3 196 54.1
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 7.6e-48 194.9 197 52.3
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 7.6e-48 194.9 198 53.0
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 9.9e-48 194.5 198 53.0
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 1.3e-47 194.1 197 53.3
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.7e-47 193.7 198 54.0
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 2.2e-47 193.4 199 52.3
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 2.9e-47 193.0 189 52.9
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 2.9e-47 193.0 198 51.5
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 3.7e-47 192.6 189 52.9
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 3.7e-47 192.6 202 54.5
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 4.9e-47 192.2 191 51.8
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 4.9e-47 192.2 202 53.0
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 4.9e-47 192.2 196 55.1
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 6.4e-47 191.8 192 51.6
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 6.4e-47 191.8 203 52.2
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 8.3e-47 191.4 194 51.0
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 1.1e-46 191.0 198 53.5
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.4e-46 190.7 202 53.0
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.4e-46 190.7 198 52.5
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 1.9e-46 190.3 195 51.8
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 2.4e-46 189.9 200 53.5
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 2.4e-46 189.9 199 51.8
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 3.2e-46 189.5 197 50.8
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 3.2e-46 189.5 191 51.8
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 5.4e-46 188.7 200 53.0
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 5.4e-46 188.7 200 53.0
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 1.2e-45 187.6 192 51.6
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 1.6e-45 187.2 193 49.7
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 1.6e-45 187.2 192 52.6
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 2.1e-45 186.8 207 50.7
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 3.5e-45 186.0 211 48.8
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 3.5e-45 186.0 211 48.8
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 3.5e-45 186.0 206 48.5
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 6.0e-45 185.3 201 51.2
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 6.0e-45 185.3 193 50.8
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 6.0e-45 185.3 190 51.6
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 7.8e-45 184.9 194 50.0
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 7.8e-45 184.9 198 49.0
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 7.8e-45 184.9 194 50.5
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 1.0e-44 184.5 206 48.5
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 1.3e-44 184.1 201 49.3
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 1.7e-44 183.7 197 50.8
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 2.3e-44 183.3 195 50.3
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 2.3e-44 183.3 192 50.0
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 2.3e-44 183.3 192 51.6
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 3.0e-44 183.0 195 49.2
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 3.0e-44 183.0 195 49.2
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 3.0e-44 183.0 199 51.3
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 3.9e-44 182.6 205 49.3
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 3.9e-44 182.6 196 51.0
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 3.9e-44 182.6 258 43.8
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 5.1e-44 182.2 199 49.2
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 8.6e-44 181.4 205 49.3
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 1.1e-43 181.0 205 50.2
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 1.1e-43 181.0 199 49.7
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 1.5e-43 180.6 207 48.8
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 5.6e-43 178.7 234 46.6
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 7.3e-43 178.3 207 48.3
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 1.6e-42 177.2 207 49.3
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 1.6e-42 177.2 197 50.8
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 2.8e-42 176.4 204 47.5
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 3.6e-42 176.0 195 47.7
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 6.2e-42 175.3 211 46.9
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 8.1e-42 174.9 227 45.8
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 3.1e-41 172.9 198 51.5
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 4.0e-41 172.6 239 43.1
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 4.0e-41 172.6 204 49.0
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 2.0e-40 170.2 204 47.5
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 2.0e-40 170.2 207 47.3
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 3.4e-40 169.5 190 48.4
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 4.9e-39 165.6 197 46.2
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 6.4e-39 165.2 213 44.6
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 4.2e-38 162.5 262 40.8
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 2.7e-37 159.8 160 55.0
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 2.7e-37 159.8 201 46.3
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 1.3e-36 157.5 197 43.7
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 8.7e-36 154.8 165 52.1
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 1.9e-35 153.7 208 41.3
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 2.5e-35 153.3 136 58.8
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 9.6e-35 151.4 194 46.4
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.6e-34 150.6 210 41.4
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.6e-34 150.6 210 41.4
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 3.6e-34 149.4 181 44.8
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 1.4e-33 147.5 331 32.3
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 2.4e-33 146.7 203 39.9
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 9.0e-33 144.8 163 47.9
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 1.5e-32 144.1 191 44.0
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 1.7e-31 140.6 204 43.1
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 2.9e-31 139.8 196 40.8
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.1e-30 137.9 202 41.1
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 2.4e-30 136.7 202 39.6
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 7.9e-29 131.7 205 42.0
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 1.9e-27 127.1 170 43.5
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 4.0e-25 119.4 175 42.3
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 1.5e-24 117.5 98 62.2
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 2.6e-24 116.7 131 53.4
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 2.9e-23 113.2 99 60.6
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.1e-22 111.3 192 40.1
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 1.1e-22 111.3 100 56.0
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 1.4e-22 110.9 104 57.7
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 1.9e-19 100.5 99 53.5
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 9.6e-19 98.2 98 52.0
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 6.9e-17 92.0 97 51.5
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 6.9e-17 92.0 98 51.0
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 2.9e-15 86.7 103 46.6
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 7.1e-14 82.0 201 31.8
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 3.5e-13 79.7 88 46.6
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 2.3e-12 77.0 90 47.8
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 2.3e-12 77.0 197 32.0
FAN28G2589 Fragaria x ananassa HOM05D003737 ORTHO05D004640 6.3e-10 68.9 53 64.2
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 1.8e-09 67.4 84 44.0
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 2.4e-09 67.0 62 53.2
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 5.8e-08 62.4 80 42.5


User provided reference genes

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