Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0101431 Rosa chinensis HOM05D004733 ORTHO05D005925 0.0e+00 2117.0 1051 100.0
FvH4_1g13250 Fragaria vesca HOM05D004733 ORTHO05D005925 0.0e+00 1974.5 1052 92.4
FAN19G0915 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1920.6 1052 90.7
FAN23G1660 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1850.9 1052 88.2
Prupe.7G155300 Prunus persica HOM05D004733 ORTHO05D005925 0.0e+00 1741.5 1027 82.9
FAN28G2014 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1740.7 1057 83.9
MD02G1146900 Malus domestica HOM05D004733 ORTHO05D005925 0.0e+00 1736.9 1046 80.9
CiPaw.02G018200 Carya illinoinensis HOM05D004733 ORTHO05D005925 0.0e+00 1565.4 1044 71.9
Cfa004311 Carpinus fangiana HOM05D004733 ORTHO05D005925 0.0e+00 1531.9 1050 71.1
GSVIVG01018952001 Vitis vinifera HOM05D004733 ORTHO05D005925 0.0e+00 1521.1 1055 71.3
Ciclev10024776m.g Citrus clementina HOM05D004733 ORTHO05D005925 0.0e+00 1506.5 1042 70.4
Atru.chr3.583 Acer truncatum HOM05D004733 ORTHO05D005925 0.0e+00 1501.5 1047 69.8
QL04p047829 Quercus lobata HOM05D004733 ORTHO05D005925 0.0e+00 1494.2 1081 68.9
CSS0026274 Camellia sinensis var. sinensis HOM05D004733 ORTHO05D005925 0.0e+00 1490.7 1048 69.1
CANSAT78G0304 Cannabis sativa HOM05D004733 ORTHO05D005925 0.0e+00 1479.9 1043 68.9
Nn5g29624 Nelumbo nucifera HOM05D004733 ORTHO05D005925 0.0e+00 1473.0 1048 67.0
Actinidia36563 Actinidia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1470.3 1051 68.1
Manes.02G094400 Manihot esculenta HOM05D004733 ORTHO05D005925 0.0e+00 1456.0 1043 67.4
Lj1g0005862 Lotus japonicus HOM05D004733 ORTHO05D005925 0.0e+00 1453.7 1045 67.5
Glyma.11G068600 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1448.3 1046 66.7
Thecc.01G034700 Theobroma cacao HOM05D004733 ORTHO05D005925 0.0e+00 1446.8 1052 67.2
PGR119G1063 Punica granatum HOM05D004733 ORTHO05D005925 0.0e+00 1445.6 1042 66.9
Potri.007G024600 Populus trichocarpa HOM05D004733 ORTHO05D005925 0.0e+00 1444.5 1042 66.8
Sed0013525 Sechium edule HOM05D004733 ORTHO05D005925 0.0e+00 1437.9 1045 66.1
Glyma.01G176400 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1434.1 1055 66.4
Lalb_Chr16g0377811 Lupinus albus HOM05D004733 ORTHO05D005925 0.0e+00 1434.1 1046 66.8
Psat2g159520 Pisum sativum HOM05D004733 ORTHO05D005925 0.0e+00 1427.9 1047 66.8
MELO3C022270.2 Cucumis melo HOM05D004733 ORTHO05D005925 0.0e+00 1427.2 1057 66.1
arahy.Tifrunner.gnm1.ann1.VZ5KK1 Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1425.2 1046 66.0
arahy.Tifrunner.gnm1.ann1.6U5FTL Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1421.4 1049 65.3
Cpa.g.sc6.117 Carica papaya HOM05D004733 ORTHO05D005925 0.0e+00 1419.8 1058 66.2
CsaV3_6G008550 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1419.8 1046 66.3
Gohir.A11G184100 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1418.3 1056 66.2
Phvul.002G030700 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1416.4 1042 66.0
THA.LOC104809497 Tarenaya hassleriana HOM05D004733 ORTHO05D005925 0.0e+00 1416.0 1048 65.9
Duzib187G1802 Durio zibethinus HOM05D004733 ORTHO05D005925 0.0e+00 1415.6 1052 65.9
arahy.Tifrunner.gnm1.ann1.VB3WEH Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1414.8 1053 65.2
Dinv39990 Davidia involucrata HOM05D004733 ORTHO05D005925 0.0e+00 1413.7 1066 66.4
CsaV3_5G036970 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1412.9 1056 65.7
Medtr5g020190 Medicago truncatula HOM05D004733 ORTHO05D005925 0.0e+00 1409.8 1049 65.5
Gohir.D11G190600 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1408.7 1056 65.4
TWI77G0475 Tripterygium wilfordii HOM05D004733 ORTHO05D005925 0.0e+00 1408.3 1045 65.8
Gorai.007G203100 Gossypium raimondii HOM05D004733 ORTHO05D005925 0.0e+00 1397.9 1063 64.8
ClCG06G002580 Citrullus lanatus HOM05D004733 ORTHO05D005925 0.0e+00 1397.1 1067 64.9
Aqoxy6G01122 Aquilegia oxysepala HOM05D004733 ORTHO05D005925 0.0e+00 1394.8 1064 64.1
VMungo1215G0507 Vigna mungo HOM05D004733 ORTHO05D005925 0.0e+00 1391.7 1053 64.6
AL2G11330 Arabidopsis lyrata HOM05D004733 ORTHO05D005925 0.0e+00 1377.5 1052 64.0
Rhsim02G0060300 Rhododendron simsii HOM05D004733 ORTHO05D005925 0.0e+00 1377.5 1159 60.3
Carub.0002s0104 Capsella rubella HOM05D004733 ORTHO05D005925 0.0e+00 1376.3 1052 64.1
Sp7g34280 Schrenkiella parvula HOM05D004733 ORTHO05D005925 0.0e+00 1369.4 1052 64.1
AT1G63810 Arabidopsis thaliana HOM05D004733 ORTHO05D005925 0.0e+00 1357.4 1055 62.8
Thhalv10024292m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 0.0e+00 1357.0 1045 63.0
Ca_24849_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 0.0e+00 1354.7 1046 63.9
BolC3t20259H Brassica oleracea HOM05D004733 ORTHO05D005925 0.0e+00 1354.3 1053 63.0
C03p80050 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1354.0 1053 63.0
PSO541G3573 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1347.4 1057 61.9
BraA08t34186Z Brassica rapa HOM05D004733 ORTHO05D005925 0.0e+00 1345.9 1053 63.0
A08p22270 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1344.7 1053 62.9
COL.COLO4_08906 Corchorus olitorius HOM05D004733 ORTHO05D005925 0.0e+00 1342.0 1074 62.2
PSO675G5282 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1338.2 1057 61.4
Hma1.2p1_0789F.1_g218380 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 0.0e+00 1337.0 1057 63.0
CARHR047390 Cardamine hirsuta HOM05D004733 ORTHO05D005925 0.0e+00 1332.8 1054 62.5
Migut.H00986 Erythranthe guttata HOM05D004733 ORTHO05D005925 0.0e+00 1326.6 1051 61.2
MSTRG.23523 Avicennia marina HOM05D004733 ORTHO05D005925 0.0e+00 1310.8 1051 60.3
Cc03_g11520 Coffea canephora HOM05D004733 ORTHO05D005925 0.0e+00 1309.3 1055 61.8
Hund16432 Selenicereus undatus HOM05D004733 ORTHO05D005925 0.0e+00 1307.0 1087 60.5
Sc03g0003000 Simmondsia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1299.6 1014 62.5
AUR62004057 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1298.9 1046 60.9
Oeu017201.1 Olea europaea HOM05D004733 ORTHO05D005925 0.0e+00 1293.5 1101 58.8
Ah.03g140900 Amaranthus hybridus HOM05D004733 ORTHO05D005925 0.0e+00 1290.4 1046 60.7
EL10Ac6g15557 Beta vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1288.9 1078 60.0
Sabra07G0021700 Salix brachista HOM05D004733 ORTHO05D005925 0.0e+00 1288.5 1090 59.5
TAR625G0290 Trochodendron aralioides HOM05D004733 ORTHO05D005925 0.0e+00 1285.8 1050 61.5
Lj4A201T52 Lonicera japonica HOM05D004733 ORTHO05D005925 0.0e+00 1281.2 1128 56.6
AUR62007571 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1280.0 1079 58.9
SalBow2G0826 Salvia bowleyana HOM05D004733 ORTHO05D005925 0.0e+00 1271.1 1052 58.8
BcaC01g00457 Brassica carinata HOM05D004733 ORTHO05D005925 0.0e+00 1254.2 1052 59.6
HanXRQChr09g0261511 Helianthus annuus HOM05D004733 ORTHO05D005925 0.0e+00 1251.9 1052 58.7
Solyc02g085230.3 Solanum lycopersicum HOM05D004733 ORTHO05D005925 0.0e+00 1231.1 1046 58.5
Sopen02g029930 Solanum pennellii HOM05D004733 ORTHO05D005925 0.0e+00 1229.2 1046 58.4
ECA232G2226 Erigeron canadensis HOM05D004733 ORTHO05D005925 0.0e+00 1222.2 1034 58.5
vmacro15553 Vaccinium macrocarpon HOM05D004733 ORTHO05D005925 0.0e+00 1194.1 1169 54.3
Nitab4.5_0001385g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1188.3 1061 56.9
Lsat_1_v5_gn_4_152020 Lactuca sativa HOM05D004733 ORTHO05D005925 0.0e+00 1175.2 1053 56.8
Peaxi162Scf00366g00125 Petunia axillaris HOM05D004733 ORTHO05D005925 0.0e+00 1173.7 1050 57.2
ATR0665G204 Amborella trichopoda HOM05D004733 ORTHO05D005925 0.0e+00 1158.7 1050 55.4
Eucgr.I02440 Eucalyptus grandis HOM05D004733 ORTHO05D005925 0.0e+00 1152.9 851 65.3
Nitab4.5_0000178g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1152.1 1132 52.9
Zm00001eb139270 Zea mays HOM05D004733 ORTHO05D005925 0.0e+00 1149.4 1055 55.3
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 0.0e+00 1116.3 1037 55.0
MBI14_g08060_MAGBIO Magnolia biondii HOM05D004733 ORTHO05D005925 1.5e-304 1049.7 871 59.5
DCAR_017293 Daucus carota HOM05D004733 ORTHO05D005925 1.4e-294 1016.5 1047 52.0
A05p29760 Brassica napus HOM05D004733 ORTHO05D005925 1.7e-287 993.0 920 56.2
Haze_15084 Corylus avellana HOM05D004733 ORTHO05D005925 1.3e-282 976.9 880 57.8
SEGI_35015 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 1.2e-280 970.3 1021 49.5
TPR.G22288 Trifolium pratense HOM05D004733 ORTHO05D005925 1.9e-270 936.4 678 66.5
unitig_21.g20953 Utricularia gibba HOM05D004733 ORTHO05D005925 3.5e-256 889.0 1060 46.6
MD15G1261100 Malus domestica HOM05D004733 ORTHO05D005925 9.8e-243 844.3 539 79.6
Pp3c6_25920 Physcomitrium patens HOM05D004733 ORTHO05D005925 5.4e-241 838.6 1065 43.0
RcHm_v2.0_Chr2g0101471 Rosa chinensis HOM05D004733 ORTHO05D005925 8.1e-221 771.5 380 98.7
CAN.G358.87 Capsicum annuum HOM05D004733 ORTHO05D005925 8.9e-220 768.1 735 53.3
CAN.G3433.1 Capsicum annuum HOM05D004733 ORTHO05D005925 7.8e-216 755.0 706 54.1
A05p29530 Brassica napus HOM05D004733 ORTHO05D005925 5.2e-212 742.3 724 53.7
Hma1.2p1_0789F.1_g218390 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 4.6e-200 702.6 509 66.8
SEGI_33720 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 7.8e-200 701.8 699 50.4
HPP92_009474 Vanilla planifolia HOM05D004733 ORTHO05D005925 3.4e-195 686.4 819 47.0
SGA_v2.0_scaffold54G19532 Striga asiatica HOM05D004733 ORTHO05D005925 6.4e-194 682.2 665 52.3
BcaNung05455 Brassica carinata HOM05D004733 ORTHO05D005925 8.4e-186 655.2 507 62.1
Mapoly0060s0020 Marchantia polymorpha HOM05D004733 ORTHO05D005925 5.1e-183 646.0 839 42.6
CBR_g37736 Chara braunii HOM05D004733 ORTHO05D000048 1.6e-181 641.0 989 37.9
QL06p046231 Quercus lobata HOM05D004733 ORTHO05D005925 2.3e-175 620.5 492 62.4
SMO347G0575 Selaginella moellendorffii HOM05D004733 ORTHO05D005925 1.3e-173 614.8 1053 37.6
AagrBONN_evm.TU.Sc2ySwM_228.918 Anthoceros agrestis HOM05D004733 ORTHO05D005925 6.3e-173 612.5 864 38.5
SHI09115 Sapria himalayana HOM05D004733 ORTHO05D005925 6.1e-168 595.9 593 51.8
Aa31LG3G3780 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.8e-164 584.3 506 56.9
QL02p065465 Quercus lobata HOM05D004733 ORTHO05D005925 1.1e-156 558.5 440 63.6
Aa31LG3G3760 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.5e-129 468.4 351 65.0
TPR.G8389 Trifolium pratense HOM05D004733 ORTHO05D005925 4.9e-125 453.4 341 65.1
Os12g0166500 Oryza sativa ssp. japonica HOM05D004733 ORTHO05D005925 4.6e-115 420.2 450 49.1
MCO15G114 Micromonas commoda HOM05D004733 ORTHO05D005925 2.8e-112 411.0 858 32.5
CAN.G358.91 Capsicum annuum HOM05D004733 ORTHO05D005925 1.1e-108 399.1 347 58.8
Cre07.g332800 Chlamydomonas reinhardtii HOM05D004733 ORTHO05D005925 9.2e-92 342.8 1153 27.5
Hma1.2p1_0400F.1_g144360 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 1.4e-84 318.9 258 62.0
Actinidia12125 Actinidia chinensis HOM05D004733 ORTHO05D005925 3.9e-74 284.3 220 61.8
Ca_24844_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 2.1e-72 278.5 292 51.7
GSVIVG01024291001 Vitis vinifera HOM05D004733 ORTHO05D005925 1.5e-70 272.3 177 72.3
CAN.G358.90 Capsicum annuum HOM05D004733 ORTHO05D005925 4.5e-70 270.8 223 57.4
A05p29770 Brassica napus HOM05D004733 ORTHO05D005925 3.2e-68 264.6 268 52.6
arahy.Tifrunner.gnm1.ann1.T3TR42 Arachis hypogaea HOM05D004733 ORTHO05D005925 9.3e-68 263.1 496 35.1
arahy.Tifrunner.gnm1.ann1.VLQ9MW Arachis hypogaea HOM05D004733 ORTHO05D005925 4.6e-67 260.8 242 55.8
C07p61790 Brassica napus HOM05D004733 ORTHO05D005925 3.0e-66 258.1 401 40.6
Cfa025732 Carpinus fangiana HOM05D004733 ORTHO05D005925 9.6e-65 253.1 970 26.6
HPP92_009475 Vanilla planifolia HOM05D004733 ORTHO05D005925 6.5e-61 240.4 204 54.9
PRCOL_00003562 Prasinoderma coloniale HOM05D004733 ORTHO05D005925 3.5e-59 234.6 1175 24.9
Thhalv10021392m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 2.5e-57 228.4 326 42.0
QL02p065474 Quercus lobata HOM05D004733 ORTHO05D005925 1.1e-52 213.0 126 81.7
A05p29560 Brassica napus HOM05D004733 ORTHO05D005925 3.6e-51 208.0 210 51.4
Phvul.011G118815 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 1.0e-50 206.5 154 61.7
RcHm_v2.0_Chr5g0064711 Rosa chinensis HOM05D004733 ORTHO05D005925 2.3e-42 178.7 164 60.4
C07p61800 Brassica napus HOM05D004733 ORTHO05D005925 3.2e-36 158.3 327 31.5
AagrBONN_evm.TU.Sc2ySwM_228.917 Anthoceros agrestis HOM05D004733 ORTHO05D005925 2.1e-35 155.6 193 45.1
QL06p046224 Quercus lobata HOM05D004733 ORTHO05D005925 1.7e-32 146.0 103 66.0
QL06p046242 Quercus lobata HOM05D004733 ORTHO05D005925 1.8e-31 142.5 103 68.9
Aa31LG3G3770 Aethionema arabicum HOM05D004733 ORTHO05D005925 5.3e-31 141.0 115 65.2
TPR.G23227 Trifolium pratense HOM05D004733 ORTHO05D006027 8.5e-29 133.7 86 72.1
Medtr1g110810 Medicago truncatula HOM05D004733 ORTHO05D005925 3.6e-27 128.3 155 47.1
Psat4g132320 Pisum sativum HOM05D004733 ORTHO05D010533 3.6e-27 128.3 154 48.7
Haze_15083 Corylus avellana HOM05D004733 ORTHO05D005925 4.0e-26 124.8 106 62.3
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 4.4e-25 121.3 71 74.6
Cc03_g11510 Coffea canephora HOM05D004733 ORTHO05D005925 1.8e-18 99.4 85 45.9
Phvul.011G118830 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 1.1e-15 90.1 122 40.2
arahy.Tifrunner.gnm1.ann1.1JA7FP Arachis hypogaea HOM05D004733 ORTHO05D005925 1.4e-15 89.7 70 58.6
Lj1g0009863 Lotus japonicus HOM05D004733 ORTHO05D001264 1.2e-14 86.7 70 62.9
C05p48270 Brassica napus HOM05D004733 ORTHO05D005925 1.3e-13 83.2 104 42.3
Psat2g060920 Pisum sativum HOM05D001085 ORTHO05D000895 1.2e-11 76.6 45 77.8
A05p29540 Brassica napus HOM05D004733 ORTHO05D005925 1.8e-10 72.8 78 51.3
Psat0s2980g0040 Pisum sativum HOM05D000709 ORTHO05D002401 5.7e-09 67.8 77 54.5


User provided reference genes

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