Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0101251 Rosa chinensis HOM05D005644 ORTHO05D007092 7.6e-109 397.1 193 100.0
FvH4_1g13080 Fragaria vesca HOM05D005644 ORTHO05D007092 2.3e-105 385.6 190 97.9
Prupe.7G156300 Prunus persica HOM05D005644 ORTHO05D007092 2.9e-100 368.6 193 92.7
FvH4_5g29620 Fragaria vesca HOM05D005644 ORTHO05D007092 1.2e-98 363.2 190 93.2
MD02G1145400 Malus domestica HOM05D005644 ORTHO05D007092 7.9e-98 360.5 193 89.6
Gohir.A02G166400 Gossypium hirsutum HOM05D005644 ORTHO05D007092 1.3e-95 353.2 193 88.6
Potri.005G121700 Populus trichocarpa HOM05D005644 ORTHO05D007092 2.8e-95 352.1 193 87.6
TWI73G0320 Tripterygium wilfordii HOM05D005644 ORTHO05D007092 2.8e-95 352.1 193 87.6
Gohir.D03G013600 Gossypium hirsutum HOM05D005644 ORTHO05D007092 3.7e-95 351.7 193 88.1
Gorai.003G013900 Gossypium raimondii HOM05D005644 ORTHO05D007092 3.7e-95 351.7 193 88.1
MELO3C026580.2 Cucumis melo HOM05D005644 ORTHO05D007092 6.2e-95 350.9 193 88.1
QL06p046522 Quercus lobata HOM05D005644 ORTHO05D007092 6.2e-95 350.9 192 87.5
Potri.007G023500 Populus trichocarpa HOM05D005644 ORTHO05D007092 8.1e-95 350.5 193 87.0
CiPaw.02G018800 Carya illinoinensis HOM05D005644 ORTHO05D007092 1.1e-94 350.1 193 87.0
Lalb_Chr09g0333481 Lupinus albus HOM05D005644 ORTHO05D007092 1.8e-94 349.4 193 87.0
CANSAT01G2444 Cannabis sativa HOM05D005644 ORTHO05D007092 2.4e-94 349.0 193 87.0
Thecc.01G033400 Theobroma cacao HOM05D005644 ORTHO05D007092 2.4e-94 349.0 193 87.6
CsaV3_3G042790 Cucumis sativus L. HOM05D005644 ORTHO05D007092 3.1e-94 348.6 193 87.6
Manes.02G095200 Manihot esculenta HOM05D005644 ORTHO05D007092 9.0e-94 347.1 193 86.5
Ciclev10022394m.g Citrus clementina HOM05D005644 ORTHO05D007092 2.0e-93 345.9 193 86.0
Nn1g04949 Nelumbo nucifera HOM05D005644 ORTHO05D007092 2.0e-93 345.9 193 86.5
Sed0008907 Sechium edule HOM05D005644 ORTHO05D007092 3.4e-93 345.1 193 86.0
arahy.Tifrunner.gnm1.ann1.59MT2Q Arachis hypogaea HOM05D005644 ORTHO05D007092 4.5e-93 344.7 193 85.5
Eucgr.I02428 Eucalyptus grandis HOM05D005644 ORTHO05D007092 4.5e-93 344.7 193 85.5
Lj2A454T58 Lonicera japonica HOM05D005644 ORTHO05D007092 4.5e-93 344.7 193 87.0
Manes.01G136400 Manihot esculenta HOM05D005644 ORTHO05D007092 4.5e-93 344.7 193 85.5
Phvul.003G254800 Phaseolus vulgaris HOM05D005644 ORTHO05D007092 4.5e-93 344.7 193 85.5
TAR101G0001 Trochodendron aralioides HOM05D005644 ORTHO05D007092 5.8e-93 344.4 193 86.0
Duzib264G1010 Durio zibethinus HOM05D005644 ORTHO05D007092 7.6e-93 344.0 193 85.5
Psat4g094240 Pisum sativum HOM05D005644 ORTHO05D007092 2.2e-92 342.4 193 85.5
Glyma.16G138200 Glycine max HOM05D005644 ORTHO05D007092 2.9e-92 342.0 193 85.0
GSVIVG01018941001 Vitis vinifera HOM05D005644 ORTHO05D007092 2.9e-92 342.0 193 85.5
Medtr8g077200 Medicago truncatula HOM05D005644 ORTHO05D007092 8.4e-92 340.5 193 85.0
Atru.chr7.2312 Acer truncatum HOM05D005644 ORTHO05D007092 1.1e-91 340.1 191 84.8
vmacro17823 Vaccinium macrocarpon HOM05D005644 ORTHO05D007092 1.4e-91 339.7 194 86.1
arahy.Tifrunner.gnm1.ann1.SR5TCU Arachis hypogaea HOM05D005644 ORTHO05D007092 1.9e-91 339.3 190 85.3
Dinv39995 Davidia involucrata HOM05D005644 ORTHO05D007092 1.9e-91 339.3 190 87.4
Ca_22319_v3 Cicer arietinum L. HOM05D005644 ORTHO05D007092 2.5e-91 339.0 193 84.5
FAN19G1519 Fragaria x ananassa HOM05D005644 ORTHO05D007092 4.2e-91 338.2 167 97.6
PGSC0003DMG400015483 Solanum tuberosum HOM05D005644 ORTHO05D007092 4.2e-91 338.2 190 84.7
AT2G18290 Arabidopsis thaliana HOM05D005644 ORTHO05D007092 5.5e-91 337.8 193 82.4
Cc07_g09670 Coffea canephora HOM05D005644 ORTHO05D007092 5.5e-91 337.8 190 85.8
Solyc02g062680.3 Solanum lycopersicum HOM05D005644 ORTHO05D007092 5.5e-91 337.8 190 84.7
Sopen02g013700 Solanum pennellii HOM05D005644 ORTHO05D007092 5.5e-91 337.8 190 84.7
AL3G51550 Arabidopsis lyrata HOM05D005644 ORTHO05D007092 7.1e-91 337.4 193 82.4
SalBow5G1882 Salvia bowleyana HOM05D005644 ORTHO05D007092 7.1e-91 337.4 190 85.8
Oeu050374.1 Olea europaea HOM05D005644 ORTHO05D007092 2.7e-90 335.5 190 85.3
ClCG10G013900 Citrullus lanatus HOM05D005644 ORTHO05D007092 4.6e-90 334.7 219 76.7
SGA_v2.0_scaffold44G16541 Striga asiatica HOM05D005644 ORTHO05D007092 4.6e-90 334.7 190 84.7
Sp3g31700 Schrenkiella parvula HOM05D005644 ORTHO05D007092 6.0e-90 334.3 193 81.9
MSTRG.3592 Avicennia marina HOM05D005644 ORTHO05D007092 1.0e-89 333.6 190 84.2
THA.LOC104819776 Tarenaya hassleriana HOM05D005644 ORTHO05D007092 1.0e-89 333.6 193 82.4
Aa31LG8G15730 Aethionema arabicum HOM05D005644 ORTHO05D007092 1.3e-89 333.2 193 81.9
Hund21503 Selenicereus undatus HOM05D005644 ORTHO05D007092 2.3e-89 332.4 193 82.4
A06p33310 Brassica napus HOM05D005644 ORTHO05D007092 3.0e-89 332.0 193 81.3
C03p59070 Brassica napus HOM05D005644 ORTHO05D007092 3.0e-89 332.0 193 81.3
BolC3t18168H Brassica oleracea HOM05D005644 ORTHO05D007092 3.0e-89 332.0 193 81.3
Carub.0003s3246 Capsella rubella HOM05D005644 ORTHO05D007092 3.9e-89 331.6 193 81.3
Thhalv10022866m.g Eutrema salsugineum HOM05D005644 ORTHO05D007092 3.9e-89 331.6 193 81.9
PSO541G0643 Papaver somniferum HOM05D005644 ORTHO05D007092 3.9e-89 331.6 193 82.9
PGR031G1764 Punica granatum HOM05D005644 ORTHO05D007092 3.9e-89 331.6 197 82.7
CAN.G53.17 Capsicum annuum HOM05D005644 ORTHO05D007092 8.7e-89 330.5 190 82.1
Lj4g0022669 Lotus japonicus HOM05D005644 ORTHO05D007092 8.7e-89 330.5 194 82.5
PSO675G1163 Papaver somniferum HOM05D005644 ORTHO05D007092 8.7e-89 330.5 193 81.9
Sc16g0002690 Simmondsia chinensis HOM05D005644 ORTHO05D007092 1.1e-88 330.1 193 81.9
EL10Ac4g07935 Beta vulgaris HOM05D005644 ORTHO05D007092 1.5e-88 329.7 193 81.9
BcaB08g34803 Brassica carinata HOM05D005644 ORTHO05D007092 1.5e-88 329.7 193 80.8
HanXRQChr09g0261331 Helianthus annuus HOM05D005644 ORTHO05D007092 1.9e-88 329.3 193 82.4
PGR083G1765 Punica granatum HOM05D005644 ORTHO05D007092 2.5e-88 328.9 193 81.3
Migut.L00368 Erythranthe guttata HOM05D005644 ORTHO05D007092 3.3e-88 328.6 190 82.6
Migut.L00376 Erythranthe guttata HOM05D005644 ORTHO05D007092 3.3e-88 328.6 190 82.6
Glyma.02G055400 Glycine max HOM05D005644 ORTHO05D007092 9.6e-88 327.0 193 82.9
MBI02_g12270_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 2.1e-87 325.9 210 77.6
Oeu002799.2 Olea europaea HOM05D005644 ORTHO05D007092 3.7e-87 325.1 190 83.2
Aqoxy6G01133 Aquilegia oxysepala HOM05D005644 ORTHO05D007092 6.2e-87 324.3 193 80.8
ECA232G0363 Erigeron canadensis HOM05D005644 ORTHO05D007092 6.2e-87 324.3 193 80.3
Lsat_1_v5_gn_4_151201 Lactuca sativa HOM05D005644 ORTHO05D007092 8.2e-87 323.9 182 86.8
TPR.G24098 Trifolium pratense HOM05D005644 ORTHO05D007092 5.3e-86 321.2 232 70.3
THA.LOC104804235 Tarenaya hassleriana HOM05D005644 ORTHO05D007092 6.9e-86 320.9 193 80.8
ATR0594G186 Amborella trichopoda HOM05D005644 ORTHO05D007092 2.0e-85 319.3 193 80.3
unitig_37.g12363 Utricularia gibba HOM05D005644 ORTHO05D007092 2.6e-85 318.9 190 80.5
AUR62020530 Chenopodium quinoa HOM05D005644 ORTHO05D007092 1.0e-84 317.0 193 79.8
AUR62043224 Chenopodium quinoa HOM05D005644 ORTHO05D007092 1.0e-84 317.0 193 79.8
Zm00001eb342630 Zea mays HOM05D005644 ORTHO05D007092 2.9e-84 315.5 177 84.2
Os05g0579800 Oryza sativa ssp. japonica HOM05D005644 ORTHO05D007092 3.8e-84 315.1 200 76.0
FAN28G2376 Fragaria x ananassa HOM05D005644 ORTHO05D003509 3.2e-83 312.0 157 97.5
FAN23G1669 Fragaria x ananassa HOM05D005644 ORTHO05D007092 4.2e-83 311.6 158 96.8
Rhsim11G0151400 Rhododendron simsii HOM05D005644 ORTHO05D007092 7.1e-83 310.8 247 67.2
BraA06t26260Z Brassica rapa HOM05D005644 ORTHO05D007092 2.3e-81 305.8 199 75.9
Zm00001eb294590 Zea mays HOM05D005644 ORTHO05D007092 8.7e-81 303.9 177 80.2
FAN08G2945 Fragaria x ananassa HOM05D005644 ORTHO05D007092 5.7e-80 301.2 156 93.6
Nitab4.5_0000136g0330 Nicotiana tabacum HOM05D005644 ORTHO05D007092 2.8e-79 298.9 172 84.3
VMungo0251G3244 Vigna mungo HOM05D005644 ORTHO05D007092 2.8e-79 298.9 170 85.3
AUR62034193 Chenopodium quinoa HOM05D005644 ORTHO05D007092 3.7e-79 298.5 193 75.6
CSS0024834 Camellia sinensis var. sinensis HOM05D005644 ORTHO05D007092 8.2e-79 297.4 164 87.2
Nitab4.5_0005482g0020 Nicotiana tabacum HOM05D005644 ORTHO05D007092 1.4e-78 296.6 174 84.5
CDE04G3399 Ceratophyllum demersum HOM05D005644 ORTHO05D007092 5.3e-78 294.7 164 82.9
Peaxi162Scf00008g03525 Petunia axillaris HOM05D005644 ORTHO05D007092 5.3e-78 294.7 190 77.4
Atru.chr3.600 Acer truncatum HOM05D005644 ORTHO05D007092 9.4e-75 283.9 194 71.6
Sabra05G0100200 Salix brachista HOM05D005644 ORTHO05D007092 2.1e-74 282.7 159 86.8
BolC7t40857H Brassica oleracea HOM05D005644 ORTHO05D007092 2.4e-70 269.2 197 69.0
FAN26G0781 Fragaria x ananassa HOM05D000577 ORTHO05D003509 1.2e-69 266.9 133 97.0
Hma1.2p1_0789F.1_g218290 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 1.4e-65 253.4 134 89.6
MBI08_g40822_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 9.7e-64 247.3 227 61.2
FAN18G2110 Fragaria x ananassa HOM05D005644 ORTHO05D007092 4.8e-63 245.0 166 75.3
Cpa.g.sc6.131 Carica papaya HOM05D005644 ORTHO05D007092 1.4e-62 243.4 139 85.6
HPP92_023420 Vanilla planifolia HOM05D005644 ORTHO05D007092 3.5e-61 238.8 194 63.9
Mapoly0106s0034 Marchantia polymorpha HOM05D005644 ORTHO05D007092 2.2e-60 236.1 170 65.3
BcaC06g36396 Brassica carinata HOM05D005644 ORTHO05D007092 9.4e-59 230.7 164 68.9
Pp3c7_6320 Physcomitrium patens HOM05D005644 ORTHO05D007092 6.7e-57 224.6 170 62.4
SMO137G0236 Selaginella moellendorffii HOM05D005644 ORTHO05D007092 1.7e-55 219.9 170 61.2
SGA_v2.0_scaffold2G01321 Striga asiatica HOM05D005644 ORTHO05D007092 1.4e-54 216.9 190 62.1
AagrBONN_evm.TU.Sc2ySwM_362.2207 Anthoceros agrestis HOM05D005644 ORTHO05D007092 4.1e-54 215.3 173 59.0
MCO15G254 Micromonas commoda HOM05D005644 ORTHO05D007092 1.3e-52 210.3 178 55.6
CARHR108880 Cardamine hirsuta HOM05D005644 ORTHO05D007092 2.1e-50 203.0 112 82.1
PRCOL_00001837 Prasinoderma coloniale HOM05D005644 ORTHO05D007092 1.4e-46 190.3 142 60.6
Haze_27504 Corylus avellana HOM05D005644 ORTHO05D007092 5.2e-41 171.8 142 54.9
FAN13G0528 Fragaria x ananassa HOM05D005644 ORTHO05D007092 1.7e-39 166.8 167 56.9
SEGI_22782 Sequoiadendron giganteum HOM05D005644 ORTHO05D007092 2.2e-39 166.4 110 70.9
CBR_g49399 Chara braunii HOM05D005644 ORTHO05D007092 1.6e-37 160.2 112 64.3
Cre13.g571850 Chlamydomonas reinhardtii HOM05D005644 ORTHO05D007092 3.8e-36 155.6 144 46.5
DCAR_025950 Daucus carota HOM05D005644 ORTHO05D007092 4.9e-31 138.7 135 56.3
MBI02_g42708_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.9e-27 126.7 135 56.3
Hma1.2p1_2451F.1_g322360 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 2.6e-24 116.3 135 51.9
MBI02_g23461_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 3.2e-22 109.4 219 38.8
C07p04570 Brassica napus HOM05D005644 ORTHO05D007092 9.2e-22 107.8 125 48.0
MBI18_g16980_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.6e-21 107.1 123 52.0
MBI18_g01974_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 3.0e-20 102.8 54 88.9
MBI02_g17151_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 2.5e-19 99.8 135 45.2
Hund21501 Selenicereus undatus HOM05D005644 ORTHO05D007092 6.8e-17 91.7 53 84.9
Hma1.2p1_0450F.1_g155660 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 7.1e-14 81.6 57 71.9
COL.COLO4_22055 Corchorus olitorius HOM05D005644 ORTHO05D007092 1.2e-13 80.9 50 84.0
Ah.13g077660 Amaranthus hybridus HOM05D005644 ORTHO05D007092 6.6e-12 75.1 57 63.2
Thecc.08G151500 Theobroma cacao HOM05D005644 ORTHO05D007092 2.0e-08 63.5 33 78.8
MBI16_g04464_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.3e-07 60.8 102 40.2


User provided reference genes

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