Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0101171 Rosa chinensis HOM05D004708 ORTHO05D005573 1.0e-94 350.1 184 100.0
FvH4_1g13011 Fragaria vesca HOM05D004708 ORTHO05D005573 9.2e-88 327.0 184 91.8
FAN19G0555 Fragaria x ananassa HOM05D004708 ORTHO05D005573 1.1e-80 303.5 217 77.9
MD15G1258400 Malus domestica HOM05D004708 ORTHO05D005573 2.1e-71 272.7 175 81.7
Prupe.7G156900 Prunus persica HOM05D004708 ORTHO05D005573 2.1e-71 272.7 173 82.1
MD02G1144700 Malus domestica HOM05D004708 ORTHO05D005573 1.0e-70 270.4 173 82.1
Ciclev10026600m.g Citrus clementina HOM05D004708 ORTHO05D005573 3.3e-69 265.4 173 77.5
AT2G18250 Arabidopsis thaliana HOM05D004708 ORTHO05D005573 2.1e-68 262.7 177 74.0
Duzib084G0089 Durio zibethinus HOM05D004708 ORTHO05D005573 2.1e-68 262.7 173 78.0
Atru.chr3.607 Acer truncatum HOM05D004708 ORTHO05D005573 6.2e-68 261.2 165 78.8
Aa31LG8G15760 Aethionema arabicum HOM05D004708 ORTHO05D005573 1.1e-67 260.4 169 74.6
Gorai.008G067200 Gossypium raimondii HOM05D004708 ORTHO05D005573 1.8e-67 259.6 169 76.9
QL06p046600 Quercus lobata HOM05D004708 ORTHO05D005573 2.4e-67 259.2 168 79.8
Thecc.03G010200 Theobroma cacao HOM05D004708 ORTHO05D005573 5.2e-67 258.1 173 76.9
Carub.0003s3243 Capsella rubella HOM05D004708 ORTHO05D005573 6.8e-67 257.7 177 72.3
COL.COLO4_34048 Corchorus olitorius HOM05D004708 ORTHO05D005573 1.5e-66 256.5 173 75.7
COL.COLO4_22050 Corchorus olitorius HOM05D004708 ORTHO05D005573 2.0e-66 256.1 182 75.3
AL3G51520 Arabidopsis lyrata HOM05D004708 ORTHO05D005573 3.4e-66 255.4 177 72.3
Duzib264G1087 Durio zibethinus HOM05D004708 ORTHO05D005573 5.8e-66 254.6 169 76.9
ECA232G2192 Erigeron canadensis HOM05D004708 ORTHO05D005573 5.8e-66 254.6 161 79.5
Gohir.A09G170800 Gossypium hirsutum HOM05D004708 ORTHO05D005573 5.8e-66 254.6 168 75.6
Potri.005G121200 Populus trichocarpa HOM05D004708 ORTHO05D005573 7.6e-66 254.2 174 76.4
CiPaw.01G043700 Carya illinoinensis HOM05D004708 ORTHO05D005573 9.9e-66 253.8 173 75.1
Gorai.006G188300 Gossypium raimondii HOM05D004708 ORTHO05D005573 9.9e-66 253.8 168 75.0
HanXRQChr09g0261341 Helianthus annuus HOM05D004708 ORTHO05D005573 9.9e-66 253.8 161 78.9
Cpa.g.sc6.137 Carica papaya HOM05D004708 ORTHO05D005573 2.2e-65 252.7 173 74.6
TWI53G1618 Tripterygium wilfordii HOM05D004708 ORTHO05D005573 2.2e-65 252.7 171 74.9
Thecc.01G032800 Theobroma cacao HOM05D004708 ORTHO05D005573 2.9e-65 252.3 169 76.3
CARHR108820 Cardamine hirsuta HOM05D004708 ORTHO05D005573 6.4e-65 251.1 177 71.2
Thhalv10022875m.g Eutrema salsugineum HOM05D004708 ORTHO05D005573 6.4e-65 251.1 173 73.4
Sp3g31670 Schrenkiella parvula HOM05D004708 ORTHO05D005573 1.4e-64 250.0 177 72.3
Manes.01G136850 Manihot esculenta HOM05D004708 ORTHO05D005573 2.4e-64 249.2 170 74.1
BcaB07g31677 Brassica carinata HOM05D004708 ORTHO05D005573 7.1e-64 247.7 173 71.7
vmacro17822 Vaccinium macrocarpon HOM05D004708 ORTHO05D005573 7.1e-64 247.7 172 72.1
BcaC06g36391 Brassica carinata HOM05D004708 ORTHO05D005573 9.3e-64 247.3 177 72.3
BcaC04g22917 Brassica carinata HOM05D004708 ORTHO05D005573 1.6e-63 246.5 173 71.7
Manes.02G095600 Manihot esculenta HOM05D004708 ORTHO05D005573 1.6e-63 246.5 177 71.8
BcaB03g16615 Brassica carinata HOM05D004708 ORTHO05D005573 2.1e-63 246.1 176 71.6
BolC9t54282H Brassica oleracea HOM05D004708 ORTHO05D005573 3.5e-63 245.4 173 71.1
Nitab4.5_0000136g0310 Nicotiana tabacum HOM05D004708 ORTHO05D005573 3.5e-63 245.4 165 74.5
GSVIVG01018936001 Vitis vinifera HOM05D004708 ORTHO05D005573 6.0e-63 244.6 165 72.7
Dinv13509 Davidia involucrata HOM05D004708 ORTHO05D005573 7.8e-63 244.2 167 73.1
A07p02450 Brassica napus HOM05D004708 ORTHO05D005573 1.0e-62 243.8 167 73.7
BolC7t40861H Brassica oleracea HOM05D004708 ORTHO05D005573 1.0e-62 243.8 177 71.8
BraA07t28041Z Brassica rapa HOM05D004708 ORTHO05D005573 1.0e-62 243.8 167 73.7
CSS0030971 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 1.0e-62 243.8 174 71.8
Solyc02g062640.4 Solanum lycopersicum HOM05D004708 ORTHO05D005573 1.0e-62 243.8 165 73.9
GSVIVG01025946001 Vitis vinifera HOM05D004708 ORTHO05D005573 1.3e-62 243.4 165 72.7
C07p04600 Brassica napus HOM05D004708 ORTHO05D005573 2.3e-62 242.7 177 71.2
Rhsim08G0118600 Rhododendron simsii HOM05D004708 ORTHO05D005573 2.3e-62 242.7 172 71.5
Sopen02g013670 Solanum pennellii HOM05D004708 ORTHO05D005573 2.3e-62 242.7 165 73.3
Lsat_1_v5_gn_4_148240 Lactuca sativa HOM05D004708 ORTHO05D005573 3.0e-62 242.3 159 74.8
CSS0040556 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 3.9e-62 241.9 172 72.1
AUR62004070 Chenopodium quinoa HOM05D004708 ORTHO05D005573 3.9e-62 241.9 163 74.2
Actinidia19193 Actinidia chinensis HOM05D004708 ORTHO05D005573 5.1e-62 241.5 172 70.9
Cc07_g09720 Coffea canephora HOM05D004708 ORTHO05D005573 6.6e-62 241.1 155 77.4
Peaxi162Scf00008g03516 Petunia axillaris HOM05D004708 ORTHO05D005573 6.6e-62 241.1 153 77.8
Hund16439 Selenicereus undatus HOM05D004708 ORTHO05D005573 6.6e-62 241.1 162 74.1
arahy.Tifrunner.gnm1.ann1.CZ32YF Arachis hypogaea HOM05D004708 ORTHO05D005573 8.7e-62 240.7 176 69.3
ClCG05G006010 Citrullus lanatus HOM05D000319 ORTHO05D000903 8.7e-62 240.7 173 69.4
Lj2g0001027 Lotus japonicus HOM05D002605 ORTHO05D002842 1.5e-61 240.0 176 68.2
CAN.G111.48 Capsicum annuum HOM05D004708 ORTHO05D005573 1.9e-61 239.6 171 71.3
arahy.Tifrunner.gnm1.ann1.Y7U3HW Arachis hypogaea HOM05D004708 ORTHO05D005573 2.5e-61 239.2 172 71.5
Sc16g0002660 Simmondsia chinensis HOM05D004708 ORTHO05D005573 3.3e-61 238.8 164 73.2
AUR62007583 Chenopodium quinoa HOM05D004708 ORTHO05D005573 4.3e-61 238.4 163 74.2
arahy.Tifrunner.gnm1.ann1.V6C6W3 Arachis hypogaea HOM05D004708 ORTHO05D005573 5.6e-61 238.0 172 72.1
PGSC0003DMG400015508 Solanum tuberosum HOM05D004708 ORTHO05D005573 9.6e-61 237.3 161 72.7
CsaV3_3G014460 Cucumis sativus L. HOM05D004708 ORTHO05D005573 3.6e-60 235.3 174 70.1
DCAR_023857 Daucus carota HOM05D004708 ORTHO05D005573 1.8e-59 233.0 161 71.4
Hma1.2p1_0224F.1_g094553 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 1.8e-59 233.0 170 68.2
EL10Ac6g15543 Beta vulgaris HOM05D004708 ORTHO05D005573 2.4e-59 232.6 178 70.2
Medtr5g020680 Medicago truncatula HOM05D004708 ORTHO05D005573 2.4e-59 232.6 173 69.9
DCAR_032374 Daucus carota HOM05D004708 ORTHO05D005573 3.1e-59 232.3 156 73.7
Hund13990 Selenicereus undatus HOM05D004708 ORTHO05D005573 4.0e-59 231.9 174 65.5
CAN.G1645.15 Capsicum annuum HOM05D004708 ORTHO05D005573 6.9e-59 231.1 161 72.7
THA.LOC104807464 Tarenaya hassleriana HOM05D004708 ORTHO05D005573 6.9e-59 231.1 206 60.7
MSTRG.23511 Avicennia marina HOM05D004708 ORTHO05D005573 9.0e-59 230.7 162 69.8
Psat2g158360 Pisum sativum HOM05D004708 ORTHO05D005573 9.0e-59 230.7 174 67.2
MD15G1258500 Malus domestica HOM05D004708 ORTHO05D005573 1.2e-58 230.3 173 71.1
MELO3C006648.2 Cucumis melo HOM05D004708 ORTHO05D005573 1.5e-58 229.9 173 68.2
TPR.G2405 Trifolium pratense HOM05D004708 ORTHO05D005573 2.0e-58 229.6 176 65.3
Lsat_1_v5_gn_2_77221 Lactuca sativa HOM05D004708 ORTHO05D005573 2.6e-58 229.2 164 73.2
Ca_24863_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 3.4e-58 228.8 173 68.2
FAN25G0668 Fragaria x ananassa HOM05D004708 ORTHO05D005573 4.4e-58 228.4 168 69.0
Glyma.01G173050 Glycine max HOM05D004708 ORTHO05D005573 7.6e-58 227.6 166 71.7
PGR119G0658 Punica granatum HOM05D004708 ORTHO05D005573 7.6e-58 227.6 180 66.1
Aqoxy5G01592 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 9.9e-58 227.3 171 66.7
SEGI_37374 Sequoiadendron giganteum HOM05D004708 ORTHO05D005573 9.9e-58 227.3 171 65.5
Hma1.2p1_0789F.1_g218250 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 1.7e-57 226.5 174 66.1
Sabra05G0099900 Salix brachista HOM05D004708 ORTHO05D005573 2.2e-57 226.1 219 60.7
arahy.Tifrunner.gnm1.ann1.KFYL3R Arachis hypogaea HOM05D004708 ORTHO05D005573 2.9e-57 225.7 176 67.0
ATR0796G251 Amborella trichopoda HOM05D004708 ORTHO05D005573 4.9e-57 224.9 184 63.0
Lalb_Chr05g0212721 Lupinus albus HOM05D004708 ORTHO05D005573 4.9e-57 224.9 165 70.9
VMungo1215G3002 Vigna mungo HOM05D004708 ORTHO05D005573 6.4e-57 224.6 166 69.3
Migut.H00962 Erythranthe guttata HOM05D004708 ORTHO05D005573 8.4e-57 224.2 161 70.2
Aqoxy3G01739 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 1.9e-56 223.0 172 65.1
Ca_21297_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 1.9e-56 223.0 167 68.9
Medtr8g073890 Medicago truncatula HOM05D004708 ORTHO05D005573 1.9e-56 223.0 167 68.9
Phvul.002G032200 Phaseolus vulgaris HOM05D004708 ORTHO05D005573 1.9e-56 223.0 167 66.5
SalBow6G2211 Salvia bowleyana HOM05D004708 ORTHO05D005573 1.9e-56 223.0 174 65.5
PSO764G0091 Papaver somniferum HOM05D004708 ORTHO05D005573 7.1e-56 221.1 156 73.7
SGA_v2.0_scaffold258G45779 Striga asiatica HOM05D004708 ORTHO05D005573 7.1e-56 221.1 167 66.5
ECA238G4849 Erigeron canadensis HOM05D004708 ORTHO05D005573 9.3e-56 220.7 155 73.5
FAN21G0333 Fragaria x ananassa HOM05D004708 ORTHO05D005573 2.1e-55 219.5 162 67.3
Os07g0179400 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 1.3e-54 216.9 158 68.4
PSO339G0290 Papaver somniferum HOM05D004708 ORTHO05D005573 3.0e-54 215.7 168 66.7
CDE12G0116 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 5.1e-54 214.9 179 64.2
Gohir.A12G064100 Gossypium hirsutum HOM05D004708 ORTHO05D005573 5.1e-54 214.9 169 67.5
Zm00001eb231510 Zea mays HOM05D004708 ORTHO05D005573 1.1e-53 213.8 165 64.8
unitig_21.g20250 Utricularia gibba HOM05D004708 ORTHO05D005573 1.5e-53 213.4 152 68.4
Gohir.D09G166500 Gossypium hirsutum HOM05D004708 ORTHO05D005573 7.3e-53 211.1 173 67.1
TAR624G0473 Trochodendron aralioides HOM05D004708 ORTHO05D005573 1.6e-52 209.9 156 69.2
CDE01G0816 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 3.6e-52 208.8 167 65.9
HPP92_014750 Vanilla planifolia HOM05D004708 ORTHO05D005573 1.5e-50 203.4 164 63.4
Glyma.02G276900 Glycine max HOM05D004708 ORTHO05D005573 4.5e-50 201.8 140 69.3
Pp3c18_16890 Physcomitrium patens HOM05D004708 ORTHO05D005573 2.4e-48 196.1 151 64.9
Dinv39998 Davidia involucrata HOM05D004708 ORTHO05D005573 7.1e-48 194.5 167 63.5
Hma1.2p1_1820F.1_g304110 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 2.1e-47 193.0 138 70.3
BcaC04g22919 Brassica carinata HOM05D004708 ORTHO05D005573 2.7e-47 192.6 201 55.2
FvH4_3g26020 Fragaria vesca HOM05D004708 ORTHO05D005573 1.3e-46 190.3 138 68.1
C09p13900 Brassica napus HOM05D004708 ORTHO05D005573 1.8e-46 189.9 175 60.0
SMO357G0013 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 1.9e-45 186.4 147 66.0
CARHR108850 Cardamine hirsuta HOM05D004708 ORTHO05D005573 5.6e-45 184.9 120 74.2
SMO318G0001 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 5.6e-45 184.9 163 61.3
Mapoly0065s0018 Marchantia polymorpha HOM05D004708 ORTHO05D005573 1.6e-44 183.3 149 67.1
A09p11790 Brassica napus HOM05D004708 ORTHO05D005573 2.1e-44 183.0 125 72.8
Gohir.D12G064000 Gossypium hirsutum HOM05D004708 ORTHO05D005573 1.2e-42 177.2 111 74.8
Lj2A454G55 Lonicera japonica HOM05D004708 ORTHO05D005573 1.4e-40 170.2 143 63.6
Zm00001eb301320 Zea mays HOM05D004708 ORTHO05D005573 6.0e-39 164.9 163 57.7
FAN11G2897 Fragaria x ananassa HOM05D004708 ORTHO05D009899 2.3e-38 162.9 182 52.2
CSS0019358 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 1.5e-37 160.2 116 74.1
CBR_g4476 Chara braunii HOM05D003322 ORTHO05D004228 1.9e-37 159.8 158 51.9
FAN26G2067 Fragaria x ananassa HOM05D004708 ORTHO05D005573 1.3e-36 157.1 84 91.7
Nitab4.5_0009165g0010 Nicotiana tabacum HOM05D000001 ORTHO05D013582 1.6e-36 156.8 101 79.2
PSO384G2349 Papaver somniferum HOM05D004708 ORTHO05D005573 3.7e-36 155.6 168 54.2
PSO731G0046 Papaver somniferum HOM05D004708 ORTHO05D005573 1.4e-35 153.7 114 72.8
Peaxi162Scf00130g00618 Petunia axillaris HOM05D004708 ORTHO05D005573 4.1e-35 152.1 169 51.5
Nn7g38122 Nelumbo nucifera HOM05D004708 ORTHO05D005573 5.0e-33 145.2 106 68.9
BraA09t36827Z Brassica rapa HOM05D004708 ORTHO05D005573 1.9e-32 143.3 106 71.7
Os02g0134000 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 1.8e-30 136.7 111 62.2
CAN.G2875.1 Capsicum annuum HOM05D004708 ORTHO05D005573 5.3e-27 125.2 103 66.0
AagrBONN_evm.TU.Sc2ySwM_228.2017 Anthoceros agrestis HOM05D004708 ORTHO05D005573 3.4e-26 122.5 111 61.3
Actinidia33865 Actinidia chinensis HOM05D004708 ORTHO05D005573 5.9e-26 121.7 91 73.6
Pp3c18_18790 Physcomitrium patens HOM05D004708 ORTHO05D005573 6.5e-25 118.2 151 46.4
arahy.Tifrunner.gnm1.ann1.W5EA8A Arachis hypogaea HOM05D004708 ORTHO05D005573 5.1e-22 108.6 94 61.7
Cre13.g590550 Chlamydomonas reinhardtii HOM05D004708 ORTHO05D005573 4.1e-19 99.0 190 31.6
AagrBONN_evm.TU.Sc2ySwM_368.1168 Anthoceros agrestis HOM05D004708 ORTHO05D005573 4.5e-18 95.5 66 74.2
HanXRQChr17g0534461 Helianthus annuus HOM05D004708 ORTHO05D005573 7.7e-18 94.7 55 74.5
CAN.G53.14 Capsicum annuum HOM05D004708 ORTHO05D005573 3.8e-17 92.4 54 77.8
C09p74780 Brassica napus HOM05D004708 ORTHO05D005573 3.2e-16 89.4 59 76.3
C09p74830 Brassica napus HOM05D004708 ORTHO05D005573 3.2e-16 89.4 59 76.3
SGA_v2.0_scaffold276G46612 Striga asiatica HOM05D004708 ORTHO05D005573 3.0e-14 82.8 113 46.9
MCO08G231 Micromonas commoda HOM05D004708 ORTHO05D005573 5.1e-14 82.0 163 34.4
BcaC06g36392 Brassica carinata HOM05D000492 ORTHO05D005571 2.0e-13 80.1 62 67.7
Cfa027114 Carpinus fangiana HOM05D004708 ORTHO05D005573 1.7e-12 77.0 190 28.4
CAN.G53.15 Capsicum annuum HOM05D004708 ORTHO05D005573 1.8e-11 73.6 62 67.7
Oeu044133.1 Olea europaea HOM05D004708 ORTHO05D005573 9.1e-11 71.2 44 77.3
PRCOL_00004729 Prasinoderma coloniale HOM05D004708 ORTHO05D005573 1.6e-10 70.5 151 31.8
Actinidia12710 Actinidia chinensis HOM05D004708 ORTHO05D005573 6.1e-07 58.5 48 54.2


User provided reference genes

Program Settings