Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 1.9e-74 282.3 137 100.0
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 2.1e-73 278.9 137 98.5
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 5.7e-50 201.1 140 73.6
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 1.1e-40 170.2 141 61.0
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 1.1e-40 170.2 141 61.0
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 1.8e-40 169.5 140 61.4
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 1.5e-39 166.4 139 57.6
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 2.0e-39 166.0 139 56.8
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 3.4e-39 165.2 137 60.6
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 7.7e-39 164.1 140 59.3
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 1.0e-38 163.7 139 59.7
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 1.3e-38 163.3 139 56.8
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 1.7e-38 162.9 139 57.6
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 1.7e-38 162.9 139 58.3
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 2.2e-38 162.5 140 60.0
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 2.2e-38 162.5 139 57.6
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 2.9e-38 162.2 139 59.7
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 2.9e-38 162.2 139 57.6
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 2.9e-38 162.2 139 55.4
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 3.8e-38 161.8 140 58.6
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 6.5e-38 161.0 139 57.6
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 6.5e-38 161.0 136 58.1
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 6.5e-38 161.0 136 60.3
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 8.5e-38 160.6 140 57.9
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 8.5e-38 160.6 141 60.3
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 8.5e-38 160.6 141 60.3
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 8.5e-38 160.6 136 55.9
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 8.5e-38 160.6 139 58.3
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 1.1e-37 160.2 141 60.3
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.1e-37 160.2 139 58.3
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 1.4e-37 159.8 137 58.4
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 1.4e-37 159.8 139 57.6
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 1.9e-37 159.5 139 56.8
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.9e-37 159.5 139 58.3
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.9e-37 159.5 139 58.3
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 1.9e-37 159.5 140 57.1
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.5e-37 159.1 139 59.0
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 3.2e-37 158.7 140 56.4
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 3.2e-37 158.7 145 54.5
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 4.2e-37 158.3 139 57.6
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 4.2e-37 158.3 135 58.5
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 4.2e-37 158.3 137 57.7
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 5.5e-37 157.9 137 57.7
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 5.5e-37 157.9 139 56.1
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 5.5e-37 157.9 139 57.6
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 5.5e-37 157.9 140 59.3
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 7.2e-37 157.5 140 57.9
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 7.2e-37 157.5 138 58.0
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 9.4e-37 157.1 137 54.7
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 9.4e-37 157.1 139 56.1
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 1.2e-36 156.8 140 55.7
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 1.6e-36 156.4 139 56.1
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.6e-36 156.4 139 54.0
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 2.1e-36 156.0 140 57.1
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 2.1e-36 156.0 133 54.1
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 2.1e-36 156.0 142 54.9
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 2.1e-36 156.0 137 55.5
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 2.1e-36 156.0 136 56.6
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 2.1e-36 156.0 139 55.4
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 2.7e-36 155.6 135 57.8
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 2.7e-36 155.6 134 55.2
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 2.7e-36 155.6 137 55.5
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 3.6e-36 155.2 137 54.7
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 3.6e-36 155.2 139 54.0
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 3.6e-36 155.2 136 59.6
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 4.7e-36 154.8 133 53.4
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 4.7e-36 154.8 139 56.1
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 4.7e-36 154.8 140 55.0
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 4.7e-36 154.8 139 54.7
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 6.1e-36 154.5 139 56.8
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 6.1e-36 154.5 137 56.9
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 6.1e-36 154.5 139 56.8
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 6.1e-36 154.5 140 57.9
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 7.9e-36 154.1 134 56.0
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 1.0e-35 153.7 139 56.8
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 1.4e-35 153.3 133 55.6
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 1.8e-35 152.9 138 56.5
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 2.3e-35 152.5 134 53.7
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 2.3e-35 152.5 139 55.4
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 3.0e-35 152.1 133 55.6
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 3.0e-35 152.1 133 54.9
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 3.0e-35 152.1 133 53.4
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 3.0e-35 152.1 136 53.7
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 3.9e-35 151.8 142 54.9
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 5.1e-35 151.4 136 54.4
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 6.7e-35 151.0 139 53.2
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 6.7e-35 151.0 133 54.9
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 8.8e-35 150.6 134 55.2
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.1e-34 150.2 131 55.0
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.1e-34 150.2 131 55.0
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 1.1e-34 150.2 139 54.0
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 1.1e-34 150.2 140 55.0
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 1.5e-34 149.8 138 55.1
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 1.5e-34 149.8 141 53.9
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 2.0e-34 149.4 132 58.3
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 2.6e-34 149.1 129 64.3
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 2.6e-34 149.1 147 51.7
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 3.3e-34 148.7 134 52.2
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 4.4e-34 148.3 133 54.1
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 4.4e-34 148.3 146 51.4
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 5.7e-34 147.9 133 54.1
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 5.7e-34 147.9 134 56.0
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 5.7e-34 147.9 136 57.4
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 7.4e-34 147.5 137 53.3
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 7.4e-34 147.5 147 51.7
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 7.4e-34 147.5 146 52.1
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 9.7e-34 147.1 132 55.3
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 1.3e-33 146.7 139 53.2
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 1.3e-33 146.7 137 54.7
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 1.3e-33 146.7 137 54.7
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 1.7e-33 146.4 137 54.0
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 1.7e-33 146.4 137 54.0
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 2.2e-33 146.0 141 52.5
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 2.2e-33 146.0 144 52.8
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 2.8e-33 145.6 141 52.5
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 2.8e-33 145.6 148 52.0
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 2.8e-33 145.6 137 53.3
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 3.7e-33 145.2 135 54.1
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 4.8e-33 144.8 135 52.6
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 4.8e-33 144.8 136 52.2
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 4.8e-33 144.8 139 54.7
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 8.2e-33 144.1 136 52.9
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 1.1e-32 143.7 141 50.4
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 7.0e-32 141.0 139 51.1
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 9.1e-32 140.6 141 51.8
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 2.6e-31 139.0 173 45.7
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 4.5e-31 138.3 141 51.1
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 4.5e-31 138.3 137 48.2
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 4.5e-31 138.3 199 41.2
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 5.9e-31 137.9 137 51.1
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 1.3e-30 136.7 128 53.9
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 1.3e-30 136.7 167 46.7
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 2.2e-30 136.0 140 48.6
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 2.9e-30 135.6 141 50.4
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 5.0e-30 134.8 141 51.8
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 5.0e-30 134.8 140 52.1
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 1.9e-29 132.9 169 45.0
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 4.7e-28 128.3 138 50.0
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 3.0e-27 125.6 140 45.0
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 8.8e-27 124.0 139 46.8
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 3.3e-26 122.1 203 37.4
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.3e-25 120.2 138 45.7
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.3e-25 120.2 138 45.7
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 2.2e-25 119.4 108 54.6
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 6.3e-25 117.9 136 43.4
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 2.4e-24 115.9 135 48.9
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 5.3e-24 114.8 133 45.1
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 7.0e-24 114.4 96 58.3
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 2.0e-23 112.8 156 44.2
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 3.5e-23 112.1 141 44.7
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 7.7e-23 110.9 136 42.6
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 1.7e-22 109.8 133 44.4
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 8.5e-22 107.5 265 29.4
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 1.9e-21 106.3 135 43.0
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 1.9e-21 106.3 140 44.3
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 4.2e-21 105.1 128 44.5
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 1.2e-20 103.6 89 56.2
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 4.4e-18 95.1 97 53.6
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 9.7e-18 94.0 98 51.0
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 1.8e-16 89.7 103 48.5
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.3e-14 83.6 132 42.4
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 4.7e-12 75.1 63 58.7
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 1.4e-11 73.6 135 34.8
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 5.2e-11 71.6 40 77.5
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 6.8e-11 71.2 40 75.0
FAN28G2589 Fragaria x ananassa HOM05D003737 ORTHO05D004640 6.8e-11 71.2 53 64.2
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 2.0e-10 69.7 84 45.2
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 2.6e-10 69.3 40 75.0
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 2.6e-10 69.3 62 53.2
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 3.4e-10 68.9 117 36.8
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 5.7e-10 68.2 43 69.8
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 2.2e-09 66.2 40 67.5
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 4.8e-09 65.1 40 65.0
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 6.3e-09 64.7 80 43.8
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 1.8e-08 63.2 40 67.5


User provided reference genes

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