Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1406.7 695 100.0
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 0.0e+00 1366.7 695 96.7
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1306.2 695 93.4
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1269.6 683 92.2
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1268.8 683 92.4
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1266.1 696 88.2
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1256.1 692 87.4
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 0.0e+00 1237.2 692 85.4
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 0.0e+00 1232.2 693 85.1
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 0.0e+00 1229.2 693 85.3
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 0.0e+00 1226.5 692 86.3
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 0.0e+00 1224.2 693 85.0
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1221.1 693 84.3
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 0.0e+00 1219.1 692 84.2
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 0.0e+00 1218.0 693 84.8
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1218.0 692 83.8
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1216.4 692 83.5
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 0.0e+00 1214.1 693 84.7
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1213.7 693 83.7
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 0.0e+00 1213.7 693 83.5
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1209.5 694 83.9
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1209.1 693 83.5
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 0.0e+00 1207.2 693 83.4
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 0.0e+00 1206.8 693 83.7
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 0.0e+00 1205.7 697 83.6
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 0.0e+00 1205.7 693 84.0
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 0.0e+00 1203.3 692 83.8
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 0.0e+00 1203.0 693 83.3
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 0.0e+00 1202.6 693 83.0
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 0.0e+00 1201.8 693 82.5
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 0.0e+00 1201.4 671 84.9
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1200.3 695 83.7
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 0.0e+00 1200.3 693 83.1
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1199.9 693 82.7
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 0.0e+00 1199.5 692 82.8
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 0.0e+00 1199.1 696 82.8
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1198.3 693 82.3
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 0.0e+00 1197.2 692 82.2
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 0.0e+00 1196.8 692 82.2
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 0.0e+00 1194.9 693 82.4
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1194.5 691 82.5
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1192.2 692 81.9
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 0.0e+00 1192.2 692 82.2
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 0.0e+00 1191.4 692 82.2
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1190.6 691 82.5
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 0.0e+00 1188.3 693 82.7
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1187.6 692 82.1
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1184.5 695 81.0
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1182.9 692 81.6
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 0.0e+00 1181.4 693 82.7
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 0.0e+00 1178.7 695 81.4
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 0.0e+00 1177.9 693 80.7
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 0.0e+00 1176.8 691 81.8
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 0.0e+00 1176.8 693 82.3
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1176.4 697 80.6
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 0.0e+00 1176.4 718 79.4
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 0.0e+00 1175.6 693 81.2
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 0.0e+00 1175.2 693 82.1
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1174.1 692 81.2
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 0.0e+00 1173.3 691 81.5
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1168.3 693 80.4
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 0.0e+00 1167.9 693 80.7
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1165.6 694 80.0
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 0.0e+00 1161.7 694 81.1
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1158.7 693 80.5
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 0.0e+00 1153.7 700 79.1
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1149.8 694 80.3
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 0.0e+00 1146.0 697 78.5
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1143.3 694 78.8
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1140.2 694 78.4
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1139.0 693 78.2
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 0.0e+00 1139.0 694 78.8
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 0.0e+00 1136.3 693 79.7
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 0.0e+00 1134.8 694 77.7
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 0.0e+00 1132.9 693 76.8
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 0.0e+00 1131.3 693 76.9
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 0.0e+00 1127.1 694 76.4
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 0.0e+00 1126.7 693 76.6
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 0.0e+00 1126.3 695 77.3
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 0.0e+00 1125.9 695 77.3
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1125.9 692 79.0
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1124.4 718 76.9
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1121.3 747 74.6
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1116.3 693 75.2
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1109.7 693 77.8
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 0.0e+00 1109.0 715 75.9
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1104.7 740 74.6
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 0.0e+00 1103.2 693 74.6
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1103.2 693 77.3
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 0.0e+00 1100.1 646 79.9
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 0.0e+00 1092.8 693 75.5
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 0.0e+00 1090.1 695 75.5
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 0.0e+00 1089.7 610 85.2
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1083.2 719 71.8
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 4.8e-312 1074.3 693 76.5
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 3.4e-308 1061.2 671 75.4
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 3.4e-308 1061.2 694 75.6
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 1.1e-306 1056.2 693 75.3
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 3.0e-296 1021.5 700 70.9
Gohir.D12G062000 Gossypium hirsutum HOM05D005163 ORTHO05D006462 2.3e-293 1011.9 580 82.9
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 1.5e-292 1009.2 701 70.0
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 1.1e-287 993.0 695 68.9
COL.COLO4_21984 Corchorus olitorius HOM05D005163 ORTHO05D006462 6.4e-275 950.7 637 73.9
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 5.1e-272 941.0 539 82.9
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 9.3e-266 920.2 707 67.8
Gohir.D11G186500 Gossypium hirsutum HOM05D005163 ORTHO05D006462 9.3e-258 893.6 580 74.5
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 1.4e-245 853.2 704 60.4
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 1.4e-242 843.2 538 76.0
vmacro17732 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 2.6e-223 779.2 469 80.8
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 3.7e-222 775.4 705 55.9
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 3.7e-222 775.4 705 55.9
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.5e-220 770.0 707 55.7
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 2.2e-219 766.1 696 54.7
FAN26G0993 Fragaria x ananassa HOM05D005163 ORTHO05D006462 2.9e-219 765.8 389 96.1
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 8.0e-217 757.7 706 54.7
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 5.3e-213 745.0 710 54.6
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 3.6e-161 572.8 721 44.5
unitig_699.g19557 Utricularia gibba HOM05D005163 ORTHO05D006462 1.3e-150 537.7 375 70.7
C08p26360 Brassica napus HOM05D005163 ORTHO05D006462 7.4e-138 495.4 504 54.2
Dinv33585 Davidia involucrata HOM05D005163 ORTHO05D006462 1.2e-108 398.3 248 76.6
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 2.7e-108 397.1 765 35.9
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 6.5e-102 375.9 817 32.6
SEGI_18766 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 1.2e-100 371.7 276 67.0
MBI01_g27921_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D006462 4.1e-96 356.7 344 55.8
BcaC07g39583 Brassica carinata HOM05D005163 ORTHO05D006462 9.5e-77 292.4 247 60.7
Hma1.2p1_0913F.1_g236060 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 6.1e-76 289.7 251 61.8
unitig_699.g19558 Utricularia gibba HOM05D005163 ORTHO05D006462 8.9e-75 285.8 178 77.0
Dinv33586 Davidia involucrata HOM05D005163 ORTHO05D006462 1.9e-69 268.1 184 72.3
SHI08600 Sapria himalayana HOM05D005163 ORTHO05D006462 2.3e-67 261.2 165 72.7
PRCOL_00007058 Prasinoderma coloniale HOM05D005163 ORTHO05D006462 6.8e-67 259.6 612 32.0
A09p44140 Brassica napus HOM05D005163 ORTHO05D006462 1.8e-59 235.0 235 51.1
SEGI_33135 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 1.7e-46 191.8 127 69.3
BcaB05g23544 Brassica carinata HOM05D005163 ORTHO05D006462 1.4e-43 182.2 138 70.3
Dinv33584 Davidia involucrata HOM05D005163 ORTHO05D006462 2.0e-42 178.3 96 87.5
BraA09t39874Z Brassica rapa HOM05D005163 ORTHO05D006462 9.0e-35 152.9 93 78.5
Sabra07G0015100 Salix brachista HOM05D005163 ORTHO05D006462 1.7e-33 148.7 75 92.0
CDE12G0395 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 2.4e-32 144.8 232 39.7
vmacro17731 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 5.4e-32 143.7 76 86.8
Hund14017 Selenicereus undatus HOM05D005163 ORTHO05D006462 2.9e-25 121.3 84 66.7
TAR625G0301 Trochodendron aralioides HOM05D005163 ORTHO05D006462 4.3e-21 107.5 85 61.2
SHI08598 Sapria himalayana HOM05D005163 ORTHO05D006462 4.2e-16 90.9 87 55.2
BolC8t50252H Brassica oleracea HOM05D005163 ORTHO05D041294 2.4e-11 75.1 49 71.4
C08p26350 Brassica napus HOM05D005163 ORTHO05D041294 9.0e-11 73.2 49 67.3
MBI01_g27920_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D000004 7.9e-07 60.1 33 81.8


User provided reference genes

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