Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0099531 Rosa chinensis HOM05D006394 ORTHO05D008057 2.7e-180 635.2 319 100.0
FvH4_1g11930 Fragaria vesca HOM05D006394 ORTHO05D008057 9.1e-160 567.0 323 89.8
FAN19G0259 Fragaria x ananassa HOM05D006394 ORTHO05D008057 2.9e-158 562.0 323 89.2
FAN26G2471 Fragaria x ananassa HOM05D006394 ORTHO05D008057 5.0e-158 561.2 323 89.2
FAN23G1778 Fragaria x ananassa HOM05D006394 ORTHO05D008057 1.1e-152 543.5 323 87.6
FAN28G2242 Fragaria x ananassa HOM05D006394 ORTHO05D008057 4.5e-151 538.1 323 87.0
Prupe.7G167400 Prunus persica HOM05D006394 ORTHO05D008057 7.1e-136 487.6 324 78.1
MD15G1246300 Malus domestica HOM05D006394 ORTHO05D008057 3.7e-129 465.3 324 75.6
CiPaw.07G057900 Carya illinoinensis HOM05D006394 ORTHO05D008057 2.0e-122 443.0 325 71.7
GSVIVG01018789001 Vitis vinifera HOM05D006394 ORTHO05D008057 2.5e-117 426.0 324 70.1
Duzib264G0144 Durio zibethinus HOM05D006394 ORTHO05D008057 7.6e-114 414.5 323 68.1
CsaV3_6G047020 Cucumis sativus L. HOM05D006394 ORTHO05D008057 7.9e-111 404.4 325 65.8
MELO3C007895.2 Cucumis melo HOM05D006394 ORTHO05D008057 6.6e-110 401.4 325 65.2
Potri.005G115100 Populus trichocarpa HOM05D006394 ORTHO05D008057 1.9e-109 399.8 322 66.1
Thecc.01G019800 Theobroma cacao HOM05D006394 ORTHO05D008057 3.3e-109 399.1 323 67.8
COL.COLO4_21919 Corchorus olitorius HOM05D006394 ORTHO05D008057 2.1e-108 396.4 322 65.8
VMungo0251G2040 Vigna mungo HOM05D006394 ORTHO05D008057 1.1e-107 394.0 323 66.6
Lj4g0024758 Lotus japonicus HOM05D006394 ORTHO05D008057 1.2e-106 390.6 328 65.5
Gorai.007G195500 Gossypium raimondii HOM05D006394 ORTHO05D008057 1.5e-106 390.2 320 65.3
Gohir.D11G183600 Gossypium hirsutum HOM05D006394 ORTHO05D008057 2.6e-106 389.4 320 65.3
CANSAT01G2157 Cannabis sativa HOM05D006394 ORTHO05D008057 1.3e-105 387.1 325 66.2
Eucgr.J02427 Eucalyptus grandis HOM05D006394 ORTHO05D008057 3.2e-104 382.5 328 65.5
Glyma.16G129000 Glycine max HOM05D006394 ORTHO05D008057 3.2e-104 382.5 322 65.5
Gohir.D10G090000 Gossypium hirsutum HOM05D006394 ORTHO05D008057 4.2e-104 382.1 316 67.1
Gohir.A11G175800 Gossypium hirsutum HOM05D006394 ORTHO05D008057 1.2e-103 380.6 320 65.3
Gorai.011G098800 Gossypium raimondii HOM05D006394 ORTHO05D008057 4.6e-103 378.6 316 66.8
TWI53G2075 Tripterygium wilfordii HOM05D006394 ORTHO05D008057 7.9e-103 377.9 326 65.6
Lalb_Chr09g0333101 Lupinus albus HOM05D006394 ORTHO05D008057 1.8e-102 376.7 323 63.5
Gohir.A10G098200 Gossypium hirsutum HOM05D006394 ORTHO05D008057 1.5e-101 373.6 316 66.1
Glyma.02G048900 Glycine max HOM05D006394 ORTHO05D008057 1.3e-100 370.5 319 64.6
arahy.Tifrunner.gnm1.ann1.VDMC0V Arachis hypogaea HOM05D006394 ORTHO05D008057 2.8e-100 369.4 326 62.6
Haze_03772 Corylus avellana HOM05D006394 ORTHO05D008057 3.7e-100 369.0 283 70.3
arahy.Tifrunner.gnm1.ann1.SHNU8N Arachis hypogaea HOM05D006394 ORTHO05D008057 8.1e-100 367.9 326 62.3
Ciclev10025906m.g Citrus clementina HOM05D006394 ORTHO05D008057 5.3e-99 365.2 313 64.5
Medtr8g075970 Medicago truncatula HOM05D006394 ORTHO05D008057 2.6e-98 362.8 332 61.4
Ca_22372_v3 Cicer arietinum L. HOM05D006394 ORTHO05D008057 1.0e-97 360.9 326 63.2
Psat4g099000 Pisum sativum HOM05D006394 ORTHO05D008057 2.9e-97 359.4 327 62.1
Actinidia22984 Actinidia chinensis HOM05D006394 ORTHO05D008057 4.9e-97 358.6 321 62.6
PSO541G5117 Papaver somniferum HOM05D006394 ORTHO05D008057 1.9e-96 356.7 341 61.6
QL06p032614 Quercus lobata HOM05D006394 ORTHO05D008057 2.1e-95 353.2 315 55.6
Cc07_g10630 Coffea canephora HOM05D006394 ORTHO05D008057 7.9e-95 351.3 333 59.5
Rhsim10G0213000 Rhododendron simsii HOM05D006394 ORTHO05D008057 1.8e-94 350.1 354 57.6
PSO675G2528 Papaver somniferum HOM05D006394 ORTHO05D008057 1.1e-93 347.4 339 60.8
PGR102G2413 Punica granatum HOM05D006394 ORTHO05D008057 4.8e-92 342.0 323 63.2
CAN.G1735.1 Capsicum annuum HOM05D006394 ORTHO05D008057 6.2e-92 341.7 328 60.1
HanXRQChr14g0441351 Helianthus annuus HOM05D006394 ORTHO05D008057 1.1e-91 340.9 321 60.1
Nn6g32361 Nelumbo nucifera HOM05D006394 ORTHO05D008057 2.4e-91 339.7 345 61.2
DCAR_032392 Daucus carota HOM05D006394 ORTHO05D008057 4.1e-91 339.0 328 60.4
Solyc03g033560.3 Solanum lycopersicum HOM05D006394 ORTHO05D008057 5.3e-91 338.6 333 58.6
Sopen03g006350 Solanum pennellii HOM05D006394 ORTHO05D008057 1.2e-90 337.4 333 58.3
MD02G1133300 Malus domestica HOM05D006394 ORTHO05D008057 2.6e-90 336.3 369 49.9
Aqoxy2G01815 Aquilegia oxysepala HOM05D006394 ORTHO05D008057 2.2e-89 333.2 339 57.2
Peaxi162Scf00034g02720 Petunia axillaris HOM05D006394 ORTHO05D008057 2.1e-87 326.6 326 58.9
Sed0000291 Sechium edule HOM05D006394 ORTHO05D008057 3.3e-85 319.3 313 50.2
MSTRG.2708 Avicennia marina HOM05D006394 ORTHO05D008057 7.4e-85 318.2 335 55.8
Cpa.g.sc6.241 Carica papaya HOM05D006394 ORTHO05D008057 4.8e-84 315.5 311 52.1
Lj2C467T3 Lonicera japonica HOM05D006394 ORTHO05D008057 1.8e-83 313.5 323 50.5
Hma1.2p1_0743F.1_g211600 Hydrangea macrophylla HOM05D006394 ORTHO05D008057 1.5e-82 310.5 312 50.3
CDE04G0153 Ceratophyllum demersum HOM05D006394 ORTHO05D008057 7.7e-82 308.1 345 55.4
Hund16487 Selenicereus undatus HOM05D006394 ORTHO05D008057 7.7e-82 308.1 318 57.9
ClCG01G020230 Citrullus lanatus HOM05D006394 ORTHO05D008057 9.4e-80 301.2 297 51.2
ECA238G0838 Erigeron canadensis HOM05D006394 ORTHO05D008057 1.6e-79 300.4 332 54.8
Phvul.003G262300 Phaseolus vulgaris HOM05D006394 ORTHO05D008057 5.7e-77 292.0 246 58.5
vmacro21917 Vaccinium macrocarpon HOM05D006394 ORTHO05D008057 1.1e-75 287.7 314 47.8
THA.LOC104804261 Tarenaya hassleriana HOM05D006394 ORTHO05D008057 5.3e-75 285.4 316 55.1
HPP92_007113 Vanilla planifolia HOM05D006394 ORTHO05D008057 1.5e-74 283.9 346 53.5
Sc16g0002110 Simmondsia chinensis HOM05D006394 ORTHO05D008057 2.0e-74 283.5 309 47.9
CSS0039773 Camellia sinensis var. sinensis HOM05D006394 ORTHO05D008057 3.4e-74 282.7 320 46.9
Sabra05G0094200 Salix brachista HOM05D006394 ORTHO05D008057 4.5e-74 282.3 297 48.5
Dinv33624 Davidia involucrata HOM05D006394 ORTHO05D008057 1.1e-72 277.7 263 63.9
TPR.G30047 Trifolium pratense HOM05D006394 ORTHO05D008057 4.2e-72 275.8 322 46.3
Manes.01G145300 Manihot esculenta HOM05D006394 ORTHO05D008057 2.7e-71 273.1 237 58.6
Actinidia28701 Actinidia chinensis HOM05D006394 ORTHO05D008057 8.8e-70 268.1 309 46.3
AT2G17975 Arabidopsis thaliana HOM05D006394 ORTHO05D008057 3.3e-69 266.2 316 51.6
Migut.H01156 Erythranthe guttata HOM05D006394 ORTHO05D008057 4.4e-69 265.8 330 53.0
Thhalv10022807m.g Eutrema salsugineum HOM05D006394 ORTHO05D008057 5.7e-69 265.4 316 52.5
TAR365G0979 Trochodendron aralioides HOM05D006394 ORTHO05D008057 1.7e-68 263.8 264 53.4
AL3G51010 Arabidopsis lyrata HOM05D006394 ORTHO05D008057 2.8e-68 263.1 318 51.6
Nitab4.5_0006119g0030 Nicotiana tabacum HOM05D006394 ORTHO05D008057 2.8e-68 263.1 301 54.5
Aa31LG8G15150 Aethionema arabicum HOM05D006394 ORTHO05D008057 8.2e-68 261.5 312 52.6
C07p05000 Brassica napus HOM05D006394 ORTHO05D008057 1.1e-67 261.2 316 52.2
Sp3g31400 Schrenkiella parvula HOM05D006394 ORTHO05D008057 2.4e-67 260.0 318 52.2
BcaB03g16582 Brassica carinata HOM05D006394 ORTHO05D008057 3.1e-67 259.6 319 51.4
CARHR108450 Cardamine hirsuta HOM05D006394 ORTHO05D008057 4.1e-67 259.2 318 51.3
PGSC0003DMG400022563 Solanum tuberosum HOM05D006394 ORTHO05D008057 9.1e-67 258.1 255 51.4
BcaC06g36350 Brassica carinata HOM05D006394 ORTHO05D008057 2.6e-66 256.5 316 51.9
BolC7t40901H Brassica oleracea HOM05D006394 ORTHO05D008057 5.0e-65 252.3 317 51.7
unitig_22.g6143 Utricularia gibba HOM05D006394 ORTHO05D008057 1.6e-63 247.3 362 47.0
Carub.0003s3211 Capsella rubella HOM05D006394 ORTHO05D008057 2.7e-63 246.5 318 48.7
Nitab4.5_0000438g0030 Nicotiana tabacum HOM05D006394 ORTHO05D008057 1.0e-62 244.6 354 46.6
A07p02700 Brassica napus HOM05D006394 ORTHO05D008057 4.0e-62 242.7 316 50.3
BraA07t28070Z Brassica rapa HOM05D006394 ORTHO05D008057 9.7e-61 238.0 317 50.2
TAR133G0002 Trochodendron aralioides HOM05D006394 ORTHO05D008057 1.7e-60 237.3 248 51.2
SalBow3G1310 Salvia bowleyana HOM05D006394 ORTHO05D008057 5.3e-59 232.3 333 39.9
SGA_v2.0_scaffold137G35082 Striga asiatica HOM05D006394 ORTHO05D008057 5.9e-58 228.8 385 45.7
EL10As8g23834 Beta vulgaris HOM05D006394 ORTHO05D008057 1.3e-57 227.6 280 53.9
Os04g0110600 Oryza sativa ssp. japonica HOM05D006394 ORTHO05D008057 1.4e-51 207.6 262 45.0
SMO347G0374 Selaginella moellendorffii HOM05D006394 ORTHO05D008057 3.2e-48 196.4 331 45.0
Zm00001eb418470 Zea mays HOM05D006394 ORTHO05D008057 3.1e-43 179.9 263 41.4
Zm00001eb411540 Zea mays HOM05D006394 ORTHO05D008057 3.5e-42 176.4 269 40.1
Zm00001eb089410 Zea mays HOM05D006394 ORTHO05D008057 5.0e-41 172.6 260 41.9
Hma1.2p1_0589F.1_g184775 Hydrangea macrophylla HOM05D006394 ORTHO05D008057 7.5e-37 158.7 183 44.3
Actinidia31001 Actinidia chinensis HOM05D006394 ORTHO05D008057 5.9e-34 149.1 155 50.3
Lsat_1_v5_gn_4_146641 Lactuca sativa HOM05D006394 ORTHO05D008057 1.7e-33 147.5 289 35.3
unitig_8.g2966 Utricularia gibba HOM05D006394 ORTHO05D008057 1.1e-32 144.8 301 34.2
CDE02G2139 Ceratophyllum demersum HOM05D006394 ORTHO05D008057 3.0e-25 120.2 130 49.2
ATR0421G001 Amborella trichopoda HOM05D006394 ORTHO05D008057 1.2e-21 108.2 49 91.8
CBR_g22407 Chara braunii HOM05D006394 ORTHO05D008057 3.4e-21 106.7 184 39.7
CSS0034598 Camellia sinensis var. sinensis HOM05D006394 ORTHO05D008057 2.9e-20 103.6 47 91.5
Sopen04g013660 Solanum pennellii HOM05D006394 ORTHO05D008057 9.2e-19 98.6 84 54.8
MBI05_g15342_MAGBIO Magnolia biondii HOM05D006394 ORTHO05D008057 5.8e-13 79.3 89 50.6
Sopen10g011120 Solanum pennellii HOM05D006394 ORTHO05D008057 1.1e-11 75.1 61 55.7
Mapoly0019s0131 Marchantia polymorpha HOM05D001564 ORTHO05D001439 6.0e-10 69.3 157 30.6
Os02g0203700 Oryza sativa ssp. japonica HOM05D001564 ORTHO05D001439 1.3e-09 68.2 150 28.7
Oeu048467.1 Olea europaea HOM05D006394 ORTHO05D008057 3.0e-09 67.0 95 42.1
Peaxi162Scf00641g00018 Petunia axillaris HOM05D001564 ORTHO05D001439 5.1e-09 66.2 154 30.5
CANSAT11G0701 Cannabis sativa HOM05D001564 ORTHO05D001439 1.1e-08 65.1 149 27.5
Sopen04g013620 Solanum pennellii HOM05D006394 ORTHO05D008057 3.3e-08 63.5 76 44.7
Thecc.09G149700 Theobroma cacao HOM05D001564 ORTHO05D001439 3.3e-08 63.5 165 29.7
MSTRG.19608 Avicennia marina HOM05D001564 ORTHO05D001439 4.3e-08 63.2 154 29.2
Solyc10g038030.3 Solanum lycopersicum HOM05D006394 ORTHO05D008057 4.3e-08 63.2 111 33.3
ATR0421G002 Amborella trichopoda HOM05D006394 ORTHO05D008057 1.2e-07 61.6 116 33.6
Potri.006G149900 Populus trichocarpa HOM05D001564 ORTHO05D001439 1.2e-07 61.6 152 30.3
MELO3C017900.2 Cucumis melo HOM05D001564 ORTHO05D001439 2.1e-07 60.8 175 24.0
MD15G1176000 Malus domestica HOM05D001564 ORTHO05D001439 2.1e-07 60.8 145 28.3
Peaxi162Scf00984g00119 Petunia axillaris HOM05D001564 ORTHO05D001439 2.1e-07 60.8 148 31.1
CsaV3_4G001400 Cucumis sativus L. HOM05D001564 ORTHO05D001439 6.2e-07 59.3 171 26.9
MD02G1035800 Malus domestica HOM05D001564 ORTHO05D001439 6.2e-07 59.3 145 28.3
Sed0001195 Sechium edule HOM05D001564 ORTHO05D001439 6.2e-07 59.3 178 27.5
GSVIVG01035819001 Vitis vinifera HOM05D001564 ORTHO05D001439 6.2e-07 59.3 161 29.2
Glyma.05G008700 Glycine max HOM05D001564 ORTHO05D001439 8.1e-07 58.9 145 27.6
Lsat_1_v5_gn_5_98101 Lactuca sativa HOM05D001564 ORTHO05D001439 8.1e-07 58.9 158 31.0
Peaxi162Scf00341g00012 Petunia axillaris HOM05D001564 ORTHO05D001439 8.1e-07 58.9 187 26.7
ATR0853G001 Amborella trichopoda HOM05D006394 ORTHO05D008057 1.1e-06 58.5 91 41.8
Peaxi162Scf00984g10021 Petunia axillaris HOM05D001564 ORTHO05D001439 1.1e-06 58.5 151 29.1
EL10Ac8g18609 Beta vulgaris HOM05D001564 ORTHO05D001439 1.4e-06 58.2 148 27.0
TWI34G0224 Tripterygium wilfordii HOM05D001564 ORTHO05D001439 1.4e-06 58.2 157 26.1
unitig_748.g7371 Utricularia gibba HOM05D001564 ORTHO05D001439 1.4e-06 58.2 161 28.0
Zm00001eb205550 Zea mays HOM05D001564 ORTHO05D001439 1.4e-06 58.2 149 26.2
Nn8g39385 Nelumbo nucifera HOM05D001564 ORTHO05D001439 1.8e-06 57.8 164 29.3
Prupe.7G239400 Prunus persica HOM05D001564 ORTHO05D001439 1.8e-06 57.8 145 27.6
Atru.chr1.3091 Acer truncatum HOM05D001564 ORTHO05D001439 2.4e-06 57.4 164 29.3
ClCG07G012800 Citrullus lanatus HOM05D001564 ORTHO05D001439 2.4e-06 57.4 160 27.5
Gohir.D05G126100 Gossypium hirsutum HOM05D001564 ORTHO05D001439 2.4e-06 57.4 165 28.5
Gorai.009G130100 Gossypium raimondii HOM05D001564 ORTHO05D001439 2.4e-06 57.4 165 28.5
HanXRQChr12g0356421 Helianthus annuus HOM05D001564 ORTHO05D001439 2.4e-06 57.4 155 30.3
HanXRQChr12g0356431 Helianthus annuus HOM05D001564 ORTHO05D001439 2.4e-06 57.4 155 30.3
MD08G1146100 Malus domestica HOM05D001564 ORTHO05D001439 2.4e-06 57.4 165 27.3
Prupe.3G080000 Prunus persica HOM05D001564 ORTHO05D001439 2.4e-06 57.4 165 27.9
CAN.G348.2 Capsicum annuum HOM05D001564 ORTHO05D001439 3.1e-06 57.0 180 26.7
CBR_g82288 Chara braunii HOM05D006394 ORTHO05D008057 3.1e-06 57.0 32 65.6
FAN09G2896 Fragaria x ananassa HOM05D001564 ORTHO05D001439 3.1e-06 57.0 191 27.7
Lsat_1_v5_gn_5_98121 Lactuca sativa HOM05D001564 ORTHO05D001439 3.1e-06 57.0 156 27.6
Lsat_1_v5_gn_8_57381 Lactuca sativa HOM05D001564 ORTHO05D001439 3.1e-06 57.0 167 28.1
BcaNung07111 Brassica carinata HOM05D001564 ORTHO05D001439 4.0e-06 56.6 154 26.6
C02p59490 Brassica napus HOM05D001564 ORTHO05D001439 4.0e-06 56.6 154 26.6
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 5.2e-06 56.2 189 29.6
DCAR_009202 Daucus carota HOM05D001564 ORTHO05D001439 5.2e-06 56.2 158 28.5
DCAR_009203 Daucus carota HOM05D001564 ORTHO05D001439 5.2e-06 56.2 158 28.5
Manes.14G130000 Manihot esculenta HOM05D001564 ORTHO05D001439 5.2e-06 56.2 146 29.5
SHI18574 Sapria himalayana HOM05D001564 ORTHO05D001439 5.2e-06 56.2 166 27.1
TWI63G0584 Tripterygium wilfordii HOM05D001564 ORTHO05D001439 5.2e-06 56.2 145 25.5
TAR383G0790 Trochodendron aralioides HOM05D001564 ORTHO05D001439 5.2e-06 56.2 167 28.1
VMungo1215G0495 Vigna mungo HOM05D001564 ORTHO05D001439 5.2e-06 56.2 145 25.5
DCAR_017833 Daucus carota HOM05D001564 ORTHO05D001439 6.8e-06 55.8 152 30.3
Duzib192G0024 Durio zibethinus HOM05D001564 ORTHO05D001439 6.8e-06 55.8 152 28.9
Glyma.07G032300 Glycine max HOM05D001564 ORTHO05D001439 6.8e-06 55.8 161 29.8
Manes.14G130300 Manihot esculenta HOM05D001564 ORTHO05D001439 6.8e-06 55.8 164 27.4
Hund26490 Selenicereus undatus HOM05D001564 ORTHO05D001439 8.9e-06 55.5 156 26.3
TWI75G1763 Tripterygium wilfordii HOM05D001564 ORTHO05D001439 8.9e-06 55.5 153 25.5


User provided reference genes

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