Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0099131 Rosa chinensis HOM05D007446 ORTHO05D009376 1.7e-48 195.7 100 100.0
FvH4_1g11510 Fragaria vesca HOM05D007446 ORTHO05D009376 3.2e-42 174.9 90 98.9
FAN23G0535 Fragaria x ananassa HOM05D000971 ORTHO05D000901 7.3e-39 163.7 84 97.6
Prupe.7G170900 Prunus persica HOM05D007446 ORTHO05D009376 7.3e-39 163.7 97 85.6
FAN26G2670 Fragaria x ananassa HOM05D007446 ORTHO05D009376 1.2e-38 162.9 85 97.6
MD02G1128000 Malus domestica HOM05D007446 ORTHO05D009376 8.1e-38 160.2 90 88.9
GSVIVG01018747001 Vitis vinifera HOM05D007446 ORTHO05D009376 1.4e-34 149.4 85 87.1
CiPaw.08G130000 Carya illinoinensis HOM05D007446 ORTHO05D009376 3.2e-34 148.3 85 87.1
ClCG01G020420 Citrullus lanatus HOM05D007446 ORTHO05D009376 4.2e-34 147.9 85 85.9
Rhsim10G0209600 Rhododendron simsii HOM05D007446 ORTHO05D009376 9.2e-34 146.7 85 85.9
Atru.chr3.842 Acer truncatum HOM05D007446 ORTHO05D009376 1.2e-33 146.4 85 84.7
vmacro22147 Vaccinium macrocarpon HOM05D007446 ORTHO05D009376 1.6e-33 146.0 85 85.9
FAN19G2392 Fragaria x ananassa HOM05D000971 ORTHO05D000901 2.1e-33 145.6 73 100.0
Manes.02G106000 Manihot esculenta HOM05D007446 ORTHO05D009376 2.7e-33 145.2 93 77.4
FAN28G0109 Fragaria x ananassa HOM05D000971 ORTHO05D000901 3.5e-33 144.8 75 96.0
Actinidia17426 Actinidia chinensis HOM05D007446 ORTHO05D009376 1.3e-32 142.9 90 80.0
Cpa.g.sc6.279 Carica papaya HOM05D007446 ORTHO05D009376 1.3e-32 142.9 85 84.7
Hma1.2p1_0869F.1_g230750 Hydrangea macrophylla HOM05D007446 ORTHO05D009376 3.0e-32 141.7 84 83.3
TWI09G0145 Tripterygium wilfordii HOM05D007446 ORTHO05D009376 3.0e-32 141.7 85 82.4
EL10Ac6g15495 Beta vulgaris HOM05D007446 ORTHO05D009376 3.9e-32 141.4 85 82.4
TWI73G1016 Tripterygium wilfordii HOM05D007446 ORTHO05D009376 3.9e-32 141.4 85 82.4
Cc07_g11000 Coffea canephora HOM05D007446 ORTHO05D009376 8.7e-32 140.2 85 80.0
Potri.005G111900 Populus trichocarpa HOM05D007446 ORTHO05D009376 8.7e-32 140.2 85 84.7
CSS0009543 Camellia sinensis var. sinensis HOM05D007446 ORTHO05D009376 1.1e-31 139.8 85 84.7
Eucgr.J02461 Eucalyptus grandis HOM05D007446 ORTHO05D009376 2.5e-31 138.7 85 80.0
Lalb_Chr05g0229761 Lupinus albus HOM05D007446 ORTHO05D009376 2.5e-31 138.7 85 82.4
PGR119G1403 Punica granatum HOM05D007446 ORTHO05D009376 2.5e-31 138.7 85 80.0
Sabra05G0091700 Salix brachista HOM05D007446 ORTHO05D009376 2.5e-31 138.7 85 83.5
Duzib264G0432 Durio zibethinus HOM05D007446 ORTHO05D009376 3.3e-31 138.3 87 81.6
CAN.G1817.7 Capsicum annuum HOM05D007446 ORTHO05D009376 4.3e-31 137.9 85 80.0
Cfa006995 Carpinus fangiana HOM05D007446 ORTHO05D009376 4.3e-31 137.9 80 86.2
Haze_03737 Corylus avellana HOM05D007446 ORTHO05D009376 7.3e-31 137.1 80 85.0
Lj4g0002006 Lotus japonicus HOM05D007446 ORTHO05D009376 7.3e-31 137.1 85 80.0
QL06p051006 Quercus lobata HOM05D007446 ORTHO05D009376 7.3e-31 137.1 81 84.0
Dinv40111 Davidia involucrata HOM05D007446 ORTHO05D009376 9.6e-31 136.7 79 84.8
Gohir.D11G181100 Gossypium hirsutum HOM05D007446 ORTHO05D009376 9.6e-31 136.7 80 87.5
Gorai.007G193000 Gossypium raimondii HOM05D007446 ORTHO05D009376 9.6e-31 136.7 80 87.5
CsaV3_6G047300 Cucumis sativus L. HOM05D007446 ORTHO05D009376 1.3e-30 136.3 87 78.2
Thecc.01G015400 Theobroma cacao HOM05D007446 ORTHO05D009376 1.3e-30 136.3 85 81.2
CAN.G1274.24 Capsicum annuum HOM05D007446 ORTHO05D009376 1.6e-30 136.0 85 78.8
Ciclev10026855m.g Citrus clementina HOM05D007446 ORTHO05D009376 1.6e-30 136.0 87 75.9
AUR62003348 Chenopodium quinoa HOM05D007446 ORTHO05D009376 3.6e-30 134.8 85 80.0
Hund14058 Selenicereus undatus HOM05D007446 ORTHO05D009376 3.6e-30 134.8 85 75.3
Carub.0007s0425 Capsella rubella HOM05D007446 ORTHO05D009376 4.8e-30 134.4 86 81.4
SalBow3G1068 Salvia bowleyana HOM05D007446 ORTHO05D009376 4.8e-30 134.4 82 80.5
Sp7g33750 Schrenkiella parvula HOM05D007446 ORTHO05D009376 6.2e-30 134.0 86 80.2
BcaNung00774 Brassica carinata HOM05D007446 ORTHO05D009376 8.1e-30 133.7 86 80.2
A01p02730 Brassica napus HOM05D007446 ORTHO05D009376 1.1e-29 133.3 86 80.2
BolC1t00289H Brassica oleracea HOM05D007446 ORTHO05D009376 1.1e-29 133.3 86 80.2
AUR62029488 Chenopodium quinoa HOM05D007446 ORTHO05D009376 1.1e-29 133.3 85 78.8
AUR62043833 Chenopodium quinoa HOM05D007446 ORTHO05D009376 1.1e-29 133.3 85 78.8
Peaxi162Scf00328g00716 Petunia axillaris HOM05D007446 ORTHO05D009376 1.1e-29 133.3 85 78.8
Solyc02g083650.3 Solanum lycopersicum HOM05D007446 ORTHO05D009376 1.4e-29 132.9 85 78.8
Sopen02g028430 Solanum pennellii HOM05D007446 ORTHO05D009376 1.4e-29 132.9 85 78.8
BraA01t00259Z Brassica rapa HOM05D007446 ORTHO05D009376 1.8e-29 132.5 86 80.2
PGSC0003DMG400003579 Solanum tuberosum HOM05D007446 ORTHO05D009376 1.8e-29 132.5 85 78.8
AL7G15070 Arabidopsis lyrata HOM05D007446 ORTHO05D009376 2.4e-29 132.1 86 80.2
AT4G35980 Arabidopsis thaliana HOM05D007446 ORTHO05D009376 2.4e-29 132.1 85 77.6
ECA232G4023 Erigeron canadensis HOM05D007446 ORTHO05D009376 2.4e-29 132.1 85 76.5
HanXRQChr09g0256761 Helianthus annuus HOM05D007446 ORTHO05D009376 2.4e-29 132.1 85 75.3
C01p03030 Brassica napus HOM05D007446 ORTHO05D009376 3.1e-29 131.7 86 79.1
Thhalv10026680m.g Eutrema salsugineum HOM05D007446 ORTHO05D009376 3.1e-29 131.7 86 80.2
Aa31LG6G12930 Aethionema arabicum HOM05D007446 ORTHO05D009376 4.0e-29 131.3 86 79.1
arahy.Tifrunner.gnm1.ann1.786IJB Arachis hypogaea HOM05D007446 ORTHO05D009376 5.3e-29 131.0 81 80.2
arahy.Tifrunner.gnm1.ann1.RW313X Arachis hypogaea HOM05D007446 ORTHO05D009376 5.3e-29 131.0 81 80.2
CANSAT25G1207 Cannabis sativa HOM05D007446 ORTHO05D009376 9.0e-29 130.2 89 76.4
THA.LOC104804270 Tarenaya hassleriana HOM05D007446 ORTHO05D009376 1.5e-28 129.4 86 77.9
Ah.03g149050 Amaranthus hybridus HOM05D007446 ORTHO05D009376 9.9e-28 126.7 85 75.3
SGA_v2.0_scaffold74G24537 Striga asiatica HOM05D007446 ORTHO05D009376 2.9e-27 125.2 81 79.0
Migut.H02175 Erythranthe guttata HOM05D007446 ORTHO05D009376 6.4e-27 124.0 84 78.6
Lsat_1_v5_gn_4_145721 Lactuca sativa HOM05D007446 ORTHO05D009376 8.4e-27 123.6 86 75.6
Psat4g101880 Pisum sativum HOM05D007446 ORTHO05D009376 9.3e-26 120.2 85 67.1
Nn7g37082 Nelumbo nucifera HOM05D007446 ORTHO05D009376 1.2e-25 119.8 81 75.3
MELO3C007921.2 Cucumis melo HOM05D007446 ORTHO05D009376 3.5e-25 118.2 65 87.7
Glyma.16G124800 Glycine max HOM05D007446 ORTHO05D009376 6.0e-25 117.5 81 71.6
TPR.G19502 Trifolium pratense HOM05D007446 ORTHO05D009376 7.8e-25 117.1 86 69.8
Psat4g101720 Pisum sativum HOM05D007446 ORTHO05D009376 1.0e-24 116.7 85 65.9
MD15G1243200 Malus domestica HOM05D007446 ORTHO05D009376 5.1e-24 114.4 65 86.2
Phvul.003G264800 Phaseolus vulgaris HOM05D007446 ORTHO05D009376 5.1e-24 114.4 84 66.7
Medtr8g075290 Medicago truncatula HOM05D007446 ORTHO05D009376 8.7e-24 113.6 86 67.4
Sed0007439 Sechium edule HOM05D007446 ORTHO05D009376 4.3e-23 111.3 65 83.1
Sc07g0001100 Simmondsia chinensis HOM05D007446 ORTHO05D009376 5.6e-23 110.9 72 73.6
TPR.G25793 Trifolium pratense HOM05D000002 ORTHO05D000001 9.6e-23 110.2 83 68.7
TAR636G2489 Trochodendron aralioides HOM05D007446 ORTHO05D009376 9.6e-23 110.2 80 68.8
Sc07g0001150 Simmondsia chinensis HOM05D007446 ORTHO05D009376 2.1e-22 109.0 72 73.6
Nitab4.5_0001658g0040 Nicotiana tabacum HOM05D007446 ORTHO05D009376 1.1e-21 106.7 65 80.0
unitig_899.g14718 Utricularia gibba HOM05D007446 ORTHO05D009376 2.4e-21 105.5 80 71.2
THA.LOC109115992 Tarenaya hassleriana HOM05D007446 ORTHO05D009376 3.1e-21 105.1 80 70.0
Nitab4.5_0001892g0060 Nicotiana tabacum HOM05D007446 ORTHO05D009376 1.5e-20 102.8 65 76.9
Oeu007438.1 Olea europaea HOM05D007446 ORTHO05D009376 2.0e-20 102.4 60 83.3
Gorai.007G317400 Gossypium raimondii HOM05D007446 ORTHO05D009376 4.5e-20 101.3 74 77.0
DCAR_023140 Daucus carota HOM05D000372 ORTHO05D004502 5.8e-20 100.9 80 67.5
ATR0681G038 Amborella trichopoda HOM05D007446 ORTHO05D009376 1.7e-19 99.4 80 63.8
Gohir.D11G294266 Gossypium hirsutum HOM05D007446 ORTHO05D009376 1.7e-19 99.4 76 73.7
Os05g0352800 Oryza sativa ssp. japonica HOM05D007446 ORTHO05D009376 1.7e-19 99.4 80 63.8
Gohir.A11G174000 Gossypium hirsutum HOM05D007446 ORTHO05D009376 2.2e-19 99.0 62 82.3
Oeu054756.1 Olea europaea HOM05D007446 ORTHO05D009376 2.9e-19 98.6 60 80.0
DCAR_011601 Daucus carota HOM05D007446 ORTHO05D009376 3.2e-18 95.1 80 65.0
HPP92_012021 Vanilla planifolia HOM05D007446 ORTHO05D009376 6.0e-17 90.9 82 56.1
PGSC0003DMG400022557 Solanum tuberosum HOM05D007446 ORTHO05D009376 4.3e-15 84.7 60 73.3
Psat0s2733g0120 Pisum sativum HOM05D007446 ORTHO05D009376 7.4e-15 84.0 93 52.7
Mapoly0007s0006 Marchantia polymorpha HOM05D007446 ORTHO05D009376 1.5e-12 76.3 83 50.6
Glyma.02G046300 Glycine max HOM05D007446 ORTHO05D009376 2.0e-12 75.9 52 69.2
SalBow3G4512 Salvia bowleyana HOM05D007446 ORTHO05D009376 2.0e-12 75.9 55 65.5
Actinidia22956 Actinidia chinensis HOM05D007446 ORTHO05D009376 1.0e-11 73.6 85 56.5
Pp3c23_18910 Physcomitrium patens HOM05D007446 ORTHO05D009376 1.7e-11 72.8 78 50.0
Zm00001eb428230 Zea mays HOM05D007446 ORTHO05D009376 1.6e-09 66.2 57 61.4
AagrBONN_evm.TU.Sc2ySwM_228.3577 Anthoceros agrestis HOM05D007446 ORTHO05D009376 6.7e-08 60.8 80 41.2
TAR369G0162 Trochodendron aralioides HOM05D002795 ORTHO05D000638 7.4e-07 57.4 38 71.1


User provided reference genes

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