Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0099011 Rosa chinensis HOM05D005052 ORTHO05D006226 1.7e-111 406.0 201 100.0
FAN23G2381 Fragaria x ananassa HOM05D005052 ORTHO05D006226 3.3e-83 312.0 246 66.7
FAN28G0876 Fragaria x ananassa HOM05D005052 ORTHO05D006226 2.8e-82 308.9 246 65.9
RcHm_v2.0_Chr2g0099021 Rosa chinensis HOM05D005052 ORTHO05D006226 4.8e-82 308.1 246 66.3
FAN19G0738 Fragaria x ananassa HOM05D005052 ORTHO05D006226 1.1e-81 307.0 246 65.9
FvH4_1g11430 Fragaria vesca HOM05D005052 ORTHO05D006226 4.1e-81 305.1 246 65.4
FAN26G3360 Fragaria x ananassa HOM05D005052 ORTHO05D006226 1.3e-79 300.1 259 62.9
MD15G1242600 Malus domestica HOM05D005052 ORTHO05D006226 1.2e-77 293.5 246 63.0
Eucgr.J02467 Eucalyptus grandis HOM05D005052 ORTHO05D006226 4.7e-77 291.6 246 62.6
Actinidia17421 Actinidia chinensis HOM05D005052 ORTHO05D006226 8.0e-77 290.8 246 62.2
GSVIVG01018732001 Vitis vinifera HOM05D005052 ORTHO05D006226 8.0e-77 290.8 246 62.6
Duzib147G0491 Durio zibethinus HOM05D005052 ORTHO05D006226 4.0e-76 288.5 246 61.8
Cfa007001 Carpinus fangiana HOM05D005052 ORTHO05D006226 5.2e-76 288.1 246 61.4
Oeu048477.1 Olea europaea HOM05D005052 ORTHO05D006226 5.2e-76 288.1 246 61.8
Atru.chr3.855 Acer truncatum HOM05D005052 ORTHO05D006226 6.7e-76 287.7 246 61.8
Actinidia22954 Actinidia chinensis HOM05D005052 ORTHO05D006226 8.8e-76 287.3 246 61.4
CiPaw.07G061100 Carya illinoinensis HOM05D005052 ORTHO05D006226 8.8e-76 287.3 246 61.0
Psat2g153160 Pisum sativum HOM05D005052 ORTHO05D006226 1.5e-75 286.6 246 61.4
Prupe.7G171600 Prunus persica HOM05D005052 ORTHO05D006226 2.0e-75 286.2 246 61.4
CSS0012363 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 2.6e-75 285.8 246 61.8
VMungo1215G2918 Vigna mungo HOM05D005052 ORTHO05D006226 2.6e-75 285.8 246 61.4
Migut.C00533 Erythranthe guttata HOM05D005052 ORTHO05D006226 3.3e-75 285.4 246 61.0
QL06p051082 Quercus lobata HOM05D005052 ORTHO05D006226 3.3e-75 285.4 246 61.0
THA.LOC104821339 Tarenaya hassleriana HOM05D005052 ORTHO05D006226 4.4e-75 285.0 246 60.2
Gohir.A11G173500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 5.7e-75 284.6 246 61.4
TWI53G1960 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 5.7e-75 284.6 246 61.4
Dinv40116 Davidia involucrata HOM05D005052 ORTHO05D006226 1.3e-74 283.5 246 60.6
Glyma.11G078700 Glycine max HOM05D005052 ORTHO05D006226 1.3e-74 283.5 246 60.2
Gohir.D12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 1.3e-74 283.5 246 60.6
Nitab4.5_0001892g0080 Nicotiana tabacum HOM05D005052 ORTHO05D006226 1.3e-74 283.5 246 59.8
Phvul.002G106700 Phaseolus vulgaris HOM05D005052 ORTHO05D006226 1.3e-74 283.5 246 61.0
PGR102G0465 Punica granatum HOM05D005052 ORTHO05D006226 1.3e-74 283.5 246 61.4
vmacro22193 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 1.3e-74 283.5 246 61.0
Nitab4.5_0008943g0020 Nicotiana tabacum HOM05D005052 ORTHO05D006226 1.7e-74 283.1 246 59.8
vmacro18426 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 1.7e-74 283.1 246 60.6
Ca_24920_v3 Cicer arietinum L. HOM05D005052 ORTHO05D006226 2.2e-74 282.7 246 61.0
Cpa.g.sc6.286 Carica papaya HOM05D005052 ORTHO05D006226 2.8e-74 282.3 246 60.2
TPR.G10542 Trifolium pratense HOM05D005052 ORTHO05D006226 3.7e-74 282.0 246 60.6
CANSAT25G2560 Cannabis sativa HOM05D005052 ORTHO05D006226 4.8e-74 281.6 246 60.2
AUR62003338 Chenopodium quinoa HOM05D005052 ORTHO05D006226 4.8e-74 281.6 246 61.0
AUR62029500 Chenopodium quinoa HOM05D005052 ORTHO05D006226 4.8e-74 281.6 246 61.0
Peaxi162Scf00328g00523 Petunia axillaris HOM05D005052 ORTHO05D006226 4.8e-74 281.6 246 60.2
Rhsim08G0032100 Rhododendron simsii HOM05D005052 ORTHO05D006226 4.8e-74 281.6 246 60.6
Thecc.01G014600 Theobroma cacao HOM05D005052 ORTHO05D006226 4.8e-74 281.6 246 60.6
CsaV3_3G000670 Cucumis sativus L. HOM05D005052 ORTHO05D006226 6.3e-74 281.2 246 61.0
Glyma.01G164300 Glycine max HOM05D005052 ORTHO05D006226 6.3e-74 281.2 246 60.2
Medtr5g022580 Medicago truncatula HOM05D005052 ORTHO05D006226 6.3e-74 281.2 246 60.2
ECA240G3065 Erigeron canadensis HOM05D005052 ORTHO05D006226 8.2e-74 280.8 246 61.0
Nn1g06262 Nelumbo nucifera HOM05D005052 ORTHO05D006226 1.1e-73 280.4 246 60.6
CiPaw.08G130500 Carya illinoinensis HOM05D005052 ORTHO05D006226 1.4e-73 280.0 246 60.6
Lj2g0011110 Lotus japonicus HOM05D005052 ORTHO05D006226 1.4e-73 280.0 246 60.2
HanXRQChr13g0424561 Helianthus annuus HOM05D005052 ORTHO05D006226 1.8e-73 279.6 246 60.2
Sabra05G0090900 Salix brachista HOM05D005052 ORTHO05D006226 1.8e-73 279.6 246 60.2
MELO3C013755.2 Cucumis melo HOM05D005052 ORTHO05D006226 2.4e-73 279.3 246 60.6
Gohir.A12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 2.4e-73 279.3 246 59.8
Potri.005G110900 Populus trichocarpa HOM05D005052 ORTHO05D006226 2.4e-73 279.3 246 60.2
Hund16503 Selenicereus undatus HOM05D005052 ORTHO05D006226 2.4e-73 279.3 246 60.6
ATR0712G043 Amborella trichopoda HOM05D005052 ORTHO05D006226 3.1e-73 278.9 246 58.9
Haze_03731 Corylus avellana HOM05D005052 ORTHO05D006226 3.1e-73 278.9 260 57.7
AL8G45470 Arabidopsis lyrata HOM05D005052 ORTHO05D006226 4.1e-73 278.5 246 59.3
MSTRG.2728 Avicennia marina HOM05D005052 ORTHO05D006226 4.1e-73 278.5 246 59.3
CDE04G1415 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 4.1e-73 278.5 246 58.5
Lalb_Chr09g0321611 Lupinus albus HOM05D005052 ORTHO05D006226 4.1e-73 278.5 246 60.2
PGSC0003DMG400003582 Solanum tuberosum HOM05D005052 ORTHO05D006226 4.1e-73 278.5 246 59.3
MBI05_g23388_MAGBIO Magnolia biondii HOM05D005052 ORTHO05D006226 5.3e-73 278.1 246 58.5
CARHR281630 Cardamine hirsuta HOM05D005052 ORTHO05D006226 7.0e-73 277.7 246 58.9
DCAR_022909 Daucus carota HOM05D005052 ORTHO05D006226 7.0e-73 277.7 246 59.8
Sc03g0003700 Simmondsia chinensis HOM05D005052 ORTHO05D006226 7.0e-73 277.7 246 60.6
CAN.G1274.31 Capsicum annuum HOM05D005052 ORTHO05D006226 9.1e-73 277.3 246 58.9
COL.COLO4_22462 Corchorus olitorius HOM05D005052 ORTHO05D006226 9.1e-73 277.3 246 59.3
Thhalv10004219m.g Eutrema salsugineum HOM05D005052 ORTHO05D006226 9.1e-73 277.3 246 58.5
Solyc02g083590.3 Solanum lycopersicum HOM05D005052 ORTHO05D006226 9.1e-73 277.3 246 58.5
Gorai.008G062200 Gossypium raimondii HOM05D005052 ORTHO05D006226 1.2e-72 276.9 247 59.9
Lj4A222T51 Lonicera japonica HOM05D005052 ORTHO05D006226 1.2e-72 276.9 246 59.8
arahy.Tifrunner.gnm1.ann1.1KVD1S Arachis hypogaea HOM05D005052 ORTHO05D006226 1.6e-72 276.6 246 60.2
arahy.Tifrunner.gnm1.ann1.PYN71E Arachis hypogaea HOM05D005052 ORTHO05D006226 1.6e-72 276.6 246 60.2
Carub.0008s2837 Capsella rubella HOM05D005052 ORTHO05D006226 1.6e-72 276.6 246 58.9
TAR381G1626 Trochodendron aralioides HOM05D005052 ORTHO05D006226 1.6e-72 276.6 247 59.5
Cc07_g11060 Coffea canephora HOM05D005052 ORTHO05D006226 2.0e-72 276.2 246 58.5
AT5G66120 Arabidopsis thaliana HOM05D005052 ORTHO05D006226 2.7e-72 275.8 246 58.9
BcaC04g23113 Brassica carinata HOM05D005052 ORTHO05D006226 2.7e-72 275.8 246 58.9
A09p10150 Brassica napus HOM05D005052 ORTHO05D006226 2.7e-72 275.8 246 58.9
C09p12030 Brassica napus HOM05D005052 ORTHO05D006226 2.7e-72 275.8 246 58.9
BolC9t54093H Brassica oleracea HOM05D005052 ORTHO05D006226 2.7e-72 275.8 246 58.9
BraA09t36659Z Brassica rapa HOM05D005052 ORTHO05D006226 2.7e-72 275.8 246 58.9
Nn5g28565 Nelumbo nucifera HOM05D005052 ORTHO05D006226 2.7e-72 275.8 246 58.5
SGA_v2.0_scaffold94G28549 Striga asiatica HOM05D005052 ORTHO05D006226 2.7e-72 275.8 246 58.5
BcaB04g20124 Brassica carinata HOM05D005052 ORTHO05D006226 3.5e-72 275.4 246 58.5
Gohir.D11G180500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 3.5e-72 275.4 246 61.0
Lalb_Chr05g0212261 Lupinus albus HOM05D005052 ORTHO05D006226 3.5e-72 275.4 246 59.3
Sopen02g028370 Solanum pennellii HOM05D005052 ORTHO05D006226 3.5e-72 275.4 246 58.1
Sed0003793 Sechium edule HOM05D005052 ORTHO05D006226 4.5e-72 275.0 246 59.8
HPP92_025914 Vanilla planifolia HOM05D005052 ORTHO05D006226 4.5e-72 275.0 246 57.7
Gorai.007G192400 Gossypium raimondii HOM05D005052 ORTHO05D006226 5.9e-72 274.6 246 59.8
Sp2g30570 Schrenkiella parvula HOM05D005052 ORTHO05D006226 7.7e-72 274.2 246 58.1
TWI09G1579 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 7.7e-72 274.2 246 59.8
Pp3c13_24150 Physcomitrium patens HOM05D005052 ORTHO05D006226 1.0e-71 273.9 246 56.5
PSO541G6199 Papaver somniferum HOM05D005052 ORTHO05D006226 1.7e-71 273.1 246 59.3
SalBow3G4284 Salvia bowleyana HOM05D005052 ORTHO05D006226 1.7e-71 273.1 246 58.1
HPP92_025909 Vanilla planifolia HOM05D005052 ORTHO05D006226 2.2e-71 272.7 246 57.3
Zm00001eb103800 Zea mays HOM05D005052 ORTHO05D006226 2.2e-71 272.7 246 57.7
Zm00001eb331970 Zea mays HOM05D005052 ORTHO05D006226 2.9e-71 272.3 249 57.8
Aqoxy4G02022 Aquilegia oxysepala HOM05D005052 ORTHO05D006226 3.8e-71 271.9 246 59.8
ClCG10G000590 Citrullus lanatus HOM05D005052 ORTHO05D006226 5.0e-71 271.6 246 59.3
Os09g0539100 Oryza sativa ssp. japonica HOM05D005052 ORTHO05D006226 6.5e-71 271.2 246 57.7
DCAR_004732 Daucus carota HOM05D005052 ORTHO05D006226 8.5e-71 270.8 246 58.5
Aa31LG1G14600 Aethionema arabicum HOM05D005052 ORTHO05D006226 1.9e-70 269.6 246 56.9
PSO675G6089 Papaver somniferum HOM05D005052 ORTHO05D006226 2.5e-70 269.2 246 58.9
SMO228G0049 Selaginella moellendorffii HOM05D005052 ORTHO05D006226 9.4e-70 267.3 246 55.3
EL10Ac6g15523 Beta vulgaris HOM05D005052 ORTHO05D006226 1.2e-67 260.4 246 56.9
CBR_g10969 Chara braunii HOM05D005052 ORTHO05D006226 1.2e-67 260.4 246 55.3
AagrBONN_evm.TU.Sc2ySwM_340.387 Anthoceros agrestis HOM05D005052 ORTHO05D006226 2.0e-67 259.6 246 53.7
Mapoly0031s0094 Marchantia polymorpha HOM05D005052 ORTHO05D006226 1.4e-65 253.4 246 52.8
Lsat_1_v5_gn_3_125660 Lactuca sativa HOM05D005052 ORTHO05D006226 1.8e-65 253.1 194 68.0
Dinv33661 Davidia involucrata HOM05D005052 ORTHO05D006226 1.7e-63 246.5 192 65.6
Cre08.g368950 Chlamydomonas reinhardtii HOM05D005052 ORTHO05D006226 2.8e-61 239.2 248 52.4
Ah.03g149130 Amaranthus hybridus HOM05D005052 ORTHO05D006226 2.6e-59 232.6 174 69.0
SEGI_14262 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 2.4e-57 226.1 176 63.6
Actinidia28717 Actinidia chinensis HOM05D005052 ORTHO05D006226 3.1e-57 225.7 227 55.9
Ciclev10025711m.g Citrus clementina HOM05D005052 ORTHO05D006226 5.4e-57 224.9 246 51.6
MCO01G625 Micromonas commoda HOM05D005052 ORTHO05D006226 7.0e-57 224.6 246 47.2
Manes.02G107200 Manihot esculenta HOM05D005052 ORTHO05D006226 1.6e-56 223.4 176 65.9
CDE02G2775 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 9.5e-54 214.2 138 73.2
SEGI_08539 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 2.8e-53 212.6 174 59.8
PRCOL_00000314 Prasinoderma coloniale HOM05D005052 ORTHO05D006226 1.2e-48 197.2 193 51.8
CDE02G1558 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 8.0e-45 184.5 236 45.8
Lsat_1_v5_gn_0_46241 Lactuca sativa HOM05D005052 ORTHO05D006226 2.1e-40 169.9 197 41.1
Hma1.2p1_2620F.1_g325580 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 3.3e-38 162.5 290 40.0
TPR.G6592 Trifolium pratense HOM05D005052 ORTHO05D006226 3.4e-35 152.5 172 51.7
Hma1.2p1_0315F.1_g122330 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 1.9e-33 146.7 221 42.5
Haze_27270 Corylus avellana HOM05D005052 ORTHO05D006226 2.8e-29 132.9 148 45.9
SGA_v2.0_scaffold273G46395 Striga asiatica HOM05D005052 ORTHO05D006226 4.0e-28 129.0 130 53.8
unitig_699.g19702 Utricularia gibba HOM05D005052 ORTHO05D006226 7.6e-27 124.8 120 54.2
Cfa024476 Carpinus fangiana HOM05D003566 ORTHO05D126353 4.9e-26 122.1 158 44.9
Rhsim07G0143100 Rhododendron simsii HOM05D005052 ORTHO05D006226 4.9e-26 122.1 161 49.1
MD02G1126200 Malus domestica HOM05D005052 ORTHO05D006226 4.5e-11 72.4 116 39.7
MD14G1099300 Malus domestica HOM05D005052 ORTHO05D006226 4.5e-11 72.4 116 39.7
Rhsim07G0135600 Rhododendron simsii HOM05D005052 ORTHO05D339393 1.8e-07 60.5 37 70.3


User provided reference genes

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