Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0098961 Rosa chinensis HOM05D024588 ORTHO05D003197 7.2e-143 511.5 504 100.0
FAN19G1292 Fragaria x ananassa HOM05D024588 ORTHO05D003197 2.6e-108 396.7 509 70.9
FvH4_1g11400 Fragaria vesca HOM05D024588 ORTHO05D003197 1.5e-84 317.8 508 69.5
Prupe.7G171900 Prunus persica HOM05D004095 ORTHO05D003197 2.7e-41 174.1 519 47.8
FAN23G2095 Fragaria x ananassa HOM05D024588 ORTHO05D003197 2.3e-32 144.4 85 90.6
Cfa007004 Carpinus fangiana HOM05D004095 ORTHO05D003197 5.9e-28 129.8 169 57.4
Atru.chr3.863_Atru.chr3.864 Acer truncatum HOM05D004095 ORTHO05D003197 2.2e-27 127.9 170 58.8
Duzib187G0006 Durio zibethinus HOM05D004095 ORTHO05D003197 9.4e-26 122.5 169 63.3
Gorai.003G007900 Gossypium raimondii HOM05D004095 ORTHO05D003197 6.1e-25 119.8 171 62.6
MD02G1126500 Malus domestica HOM05D004095 ORTHO05D003197 8.8e-24 115.9 491 54.0
COL.COLO4_22466 Corchorus olitorius HOM05D004095 ORTHO05D003197 2.6e-23 114.4 164 58.5
Gohir.D03G007700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 7.5e-23 112.8 171 64.9
Duzib264G0091 Durio zibethinus HOM05D004095 ORTHO05D003197 3.7e-22 110.5 171 53.2
Gohir.A02G172400 Gossypium hirsutum HOM05D004095 ORTHO05D003197 8.2e-22 109.4 171 64.9
Eucgr.I02328 Eucalyptus grandis HOM05D004095 ORTHO05D003197 1.8e-21 108.2 168 60.1
Duzib147G0922 Durio zibethinus HOM05D004095 ORTHO05D003197 5.3e-21 106.7 171 50.3
GSVIVG01018727001 Vitis vinifera HOM05D004095 ORTHO05D003197 6.1e-17 93.2 169 47.9
PGR119G1825 Punica granatum HOM05D004095 ORTHO05D003197 8.0e-17 92.8 173 55.5
TAR376G0784 Trochodendron aralioides HOM05D004095 ORTHO05D003197 2.3e-16 91.3 164 54.3
Haze_03728 Corylus avellana HOM05D004095 ORTHO05D003197 5.2e-16 90.1 246 43.5
CARHR244340 Cardamine hirsuta HOM05D004095 ORTHO05D003197 1.4e-13 82.0 186 41.9
THA.LOC104807504 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 4.1e-13 80.5 163 45.4
Ciclev10025767m.g Citrus clementina HOM05D004095 ORTHO05D003197 1.6e-12 78.6 172 54.7
Cc10_g01420 Coffea canephora HOM05D004095 ORTHO05D003197 1.6e-12 78.6 163 41.7
Nn6g31993 Nelumbo nucifera HOM05D004095 ORTHO05D003197 3.5e-12 77.4 162 48.8
THA.LOC104804274 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 3.5e-12 77.4 164 47.6
TAR381G0731 Trochodendron aralioides HOM05D004095 ORTHO05D003197 4.5e-12 77.0 195 52.3
BcaNung05051 Brassica carinata HOM05D004095 ORTHO05D003197 3.8e-11 73.9 190 42.1
PSO675G0587 Papaver somniferum HOM05D004095 ORTHO05D003197 8.6e-11 72.8 159 40.9
Potri.002G019200 Populus trichocarpa HOM05D004095 ORTHO05D003197 1.1e-10 72.4 90 46.7
Dinv31870 Davidia involucrata HOM05D004095 ORTHO05D003197 1.5e-10 72.0 187 40.6
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 3.3e-10 70.9 106 42.5
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 4.2e-10 70.5 106 42.5
Gorai.008G131100 Gossypium raimondii HOM05D004095 ORTHO05D003197 7.2e-10 69.7 113 52.2
QL02p012206 Quercus lobata HOM05D004095 ORTHO05D003197 7.2e-10 69.7 89 41.6
Oeu061977.1 Olea europaea HOM05D004095 ORTHO05D003197 1.2e-09 68.9 88 42.0
Aqoxy5G01820 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 1.6e-09 68.6 130 38.5
MBI05_g23379_MAGBIO Magnolia biondii HOM05D004095 ORTHO05D003197 1.6e-09 68.6 181 42.5
Aa31LG6G12890 Aethionema arabicum HOM05D004095 ORTHO05D003197 2.1e-09 68.2 83 43.4
CAN.G311.49 Capsicum annuum HOM05D004095 ORTHO05D003197 2.8e-09 67.8 81 46.9
Potri.005G242400 Populus trichocarpa HOM05D004095 ORTHO05D003197 2.8e-09 67.8 101 40.6
AL7G15100 Arabidopsis lyrata HOM05D004095 ORTHO05D003197 3.6e-09 67.4 200 44.5
CsaV3_2G024280 Cucumis sativus L. HOM05D004095 ORTHO05D003197 4.7e-09 67.0 103 40.8
PSO541G2818 Papaver somniferum HOM05D004095 ORTHO05D003197 4.7e-09 67.0 162 47.5
Carub.0007s0428 Capsella rubella HOM05D004095 ORTHO05D003197 8.0e-09 66.2 116 31.9
TAR628G1526 Trochodendron aralioides HOM05D004095 ORTHO05D003197 8.0e-09 66.2 81 42.0
Cfa013982 Carpinus fangiana HOM05D004095 ORTHO05D003197 1.0e-08 65.9 104 37.5
Hma1.2p1_0023F.1_g015650 Hydrangea macrophylla HOM05D004095 ORTHO05D003197 1.0e-08 65.9 132 33.3
Prupe.1G362800 Prunus persica HOM05D004095 ORTHO05D003197 1.0e-08 65.9 155 32.9
Actinidia17001 Actinidia chinensis HOM05D004095 ORTHO05D003197 1.4e-08 65.5 173 41.6
Duzib041G0318 Durio zibethinus HOM05D004095 ORTHO05D003197 1.4e-08 65.5 147 36.1
Sc15g0004790 Simmondsia chinensis HOM05D004095 ORTHO05D003197 1.4e-08 65.5 172 42.4
TWI12G1115 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 1.4e-08 65.5 87 36.8
BcaNung00778 Brassica carinata HOM05D004095 ORTHO05D003197 2.3e-08 64.7 86 40.7
CiPaw.08G067700 Carya illinoinensis HOM05D004095 ORTHO05D003197 2.3e-08 64.7 81 43.2
Gorai.008G208400 Gossypium raimondii HOM05D004095 ORTHO05D003197 2.3e-08 64.7 162 32.1
Sabra02G0015500 Salix brachista HOM05D004095 ORTHO05D003197 2.3e-08 64.7 89 40.4
THA.LOC104809551 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 2.3e-08 64.7 125 34.4
Sed0007913 Sechium edule HOM05D004095 ORTHO05D003197 3.0e-08 64.3 82 43.9
Actinidia15439 Actinidia chinensis HOM05D004095 ORTHO05D003197 4.0e-08 63.9 172 40.7
arahy.Tifrunner.gnm1.ann1.VNIF6J Arachis hypogaea HOM05D004095 ORTHO05D003197 4.0e-08 63.9 82 40.2
Peaxi162Scf00860g00422 Petunia axillaris HOM05D004095 ORTHO05D003197 4.0e-08 63.9 152 47.4
AT4G35940 Arabidopsis thaliana HOM05D004095 ORTHO05D003197 5.2e-08 63.5 83 38.6
Gohir.D12G193466 Gossypium hirsutum HOM05D004095 ORTHO05D003197 6.8e-08 63.2 162 32.1
A03p63990 Brassica napus HOM05D004095 ORTHO05D003197 8.9e-08 62.8 201 36.8
ClCG08G014140 Citrullus lanatus HOM05D004095 ORTHO05D003197 8.9e-08 62.8 83 44.6
Ciclev10002009m.g Citrus clementina HOM05D004095 ORTHO05D003197 8.9e-08 62.8 81 39.5
TWI36G1615 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 8.9e-08 62.8 150 32.0
unitig_749.g13901 Utricularia gibba HOM05D004095 ORTHO05D003197 8.9e-08 62.8 92 39.1
C01p03060 Brassica napus HOM05D004095 ORTHO05D003197 1.2e-07 62.4 170 45.3
PGSC0003DMG400009946 Solanum tuberosum HOM05D004095 ORTHO05D003197 1.2e-07 62.4 155 46.5
THA.LOC104813782 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 1.2e-07 62.4 126 38.1
MELO3C011353.2 Cucumis melo HOM05D004095 ORTHO05D003197 1.5e-07 62.0 102 41.2
Sp7g33720 Schrenkiella parvula HOM05D004095 ORTHO05D003197 1.5e-07 62.0 195 51.3
Sed0017695 Sechium edule HOM05D004095 ORTHO05D003197 1.5e-07 62.0 88 38.6
BraA03t15466Z Brassica rapa HOM05D004095 ORTHO05D003197 2.0e-07 61.6 204 35.8
Haze_22667 Corylus avellana HOM05D004095 ORTHO05D003197 2.0e-07 61.6 87 39.1
Thecc.02G059700 Theobroma cacao HOM05D015147 ORTHO05D003197 2.0e-07 61.6 162 32.1
Nn5g30782 Nelumbo nucifera HOM05D004095 ORTHO05D003197 3.4e-07 60.8 169 54.4
SalBow7G2790 Salvia bowleyana HOM05D004095 ORTHO05D003197 3.4e-07 60.8 81 39.5
Solyc04g081730.3 Solanum lycopersicum HOM05D004095 ORTHO05D003197 3.4e-07 60.8 150 44.0
Lalb_Chr08g0246191 Lupinus albus HOM05D004095 ORTHO05D003197 4.4e-07 60.5 84 36.9
unitig_0.g2088 Utricularia gibba HOM05D004095 ORTHO05D003197 4.4e-07 60.5 96 40.6
CARHR069410 Cardamine hirsuta HOM05D008819 ORTHO05D003197 5.7e-07 60.1 114 36.0
Oeu026642.1 Olea europaea HOM05D004095 ORTHO05D003197 5.7e-07 60.1 86 40.7
Sopen04g035350 Solanum pennellii HOM05D004095 ORTHO05D003197 5.7e-07 60.1 150 44.0
DCAR_009498 Daucus carota HOM05D004095 ORTHO05D003197 7.5e-07 59.7 167 38.9
Sabra05G0187500 Salix brachista HOM05D004095 ORTHO05D003197 7.5e-07 59.7 89 40.4
CSS0036757 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 1.7e-06 58.5 121 35.5
Carub.0001s1963 Capsella rubella HOM05D008819 ORTHO05D003197 1.7e-06 58.5 101 38.6
Gorai.009G193100 Gossypium raimondii HOM05D004095 ORTHO05D003197 1.7e-06 58.5 103 35.0
Lj4A21T58 Lonicera japonica HOM05D004095 ORTHO05D003197 1.7e-06 58.5 175 40.0
COL.COLO4_26117 Corchorus olitorius HOM05D004095 ORTHO05D003197 2.2e-06 58.2 113 32.7
Nitab4.5_0006505g0050 Nicotiana tabacum HOM05D004095 ORTHO05D003197 2.2e-06 58.2 84 38.1
GSVIVG01024025001 Vitis vinifera HOM05D004095 ORTHO05D003197 2.2e-06 58.2 81 43.2
Ah.00g000350 Amaranthus hybridus HOM05D004095 ORTHO05D003197 2.8e-06 57.8 116 32.8
HanXRQChr12g0366821 Helianthus annuus HOM05D004095 ORTHO05D003197 2.8e-06 57.8 158 41.1
Lsat_1_v5_gn_8_29800 Lactuca sativa HOM05D004095 ORTHO05D003197 3.7e-06 57.4 147 40.1
Oeu007365.1 Olea europaea HOM05D004095 ORTHO05D003197 3.7e-06 57.4 132 36.4
FAN15G2156 Fragaria x ananassa HOM05D004095 ORTHO05D003197 4.9e-06 57.0 107 39.3
Gohir.D05G187800 Gossypium hirsutum HOM05D004095 ORTHO05D003197 6.3e-06 56.6 103 35.0
Lj4A799T84 Lonicera japonica HOM05D004095 ORTHO05D003197 6.3e-06 56.6 162 41.4
PSO700G0117 Papaver somniferum HOM05D004095 ORTHO05D003197 6.3e-06 56.6 92 35.9
C07p61450 Brassica napus HOM05D004095 ORTHO05D003197 8.3e-06 56.2 190 40.5
MD15G1242000 Malus domestica HOM05D004095 ORTHO05D003197 8.3e-06 56.2 29 86.2


User provided reference genes

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