Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0098611 Rosa chinensis HOM05D004723 ORTHO05D006176 1.3e-302 1042.7 714 100.0
FAN26G3228 Fragaria x ananassa HOM05D004723 ORTHO05D006176 7.1e-245 850.9 714 81.0
FAN19G1371 Fragaria x ananassa HOM05D004723 ORTHO05D006176 1.1e-237 827.0 713 81.6
FvH4_1g11200 Fragaria vesca HOM05D004723 ORTHO05D006176 1.0e-235 820.5 714 81.5
FAN23G0842 Fragaria x ananassa HOM05D004723 ORTHO05D006176 2.9e-206 722.6 655 79.2
Prupe.7G173800 Prunus persica HOM05D004723 ORTHO05D006176 3.1e-200 702.6 724 67.0
MD02G1124600 Malus domestica HOM05D004723 ORTHO05D006176 1.8e-171 607.1 727 63.3
Atru.chr3.886 Acer truncatum HOM05D004723 ORTHO05D006176 1.2e-159 567.8 738 53.0
Atru.chr3.897 Acer truncatum HOM05D004723 ORTHO05D006176 1.2e-159 567.8 738 53.0
QL06p051414 Quercus lobata HOM05D004723 ORTHO05D006176 4.4e-154 549.3 711 58.4
Manes.10G142700 Manihot esculenta HOM05D004723 ORTHO05D006176 1.7e-153 547.4 743 51.0
Cfa007019 Carpinus fangiana HOM05D004723 ORTHO05D006176 2.4e-152 543.5 709 54.9
Cc07_g11220 Coffea canephora HOM05D004723 ORTHO05D006176 2.4e-152 543.5 720 51.2
Potri.005G108800 Populus trichocarpa HOM05D004723 ORTHO05D006176 7.8e-151 538.5 744 56.6
Sabra05G0089200 Salix brachista HOM05D004723 ORTHO05D006176 1.0e-150 538.1 705 57.4
Haze_03712 Corylus avellana HOM05D004723 ORTHO05D006176 1.9e-149 533.9 727 51.0
Sed0008382 Sechium edule HOM05D004723 ORTHO05D006176 5.6e-149 532.3 713 54.6
Thecc.08G139800 Theobroma cacao HOM05D004723 ORTHO05D006176 1.2e-148 531.2 727 54.7
Gorai.012G044400 Gossypium raimondii HOM05D004723 ORTHO05D006176 8.1e-148 528.5 740 50.3
GSVIVG01007226001 Vitis vinifera HOM05D004723 ORTHO05D006176 8.1e-148 528.5 700 48.3
TWI09G0244 Tripterygium wilfordii HOM05D004723 ORTHO05D006176 1.8e-147 527.3 742 53.1
ClCG05G000690 Citrullus lanatus HOM05D004723 ORTHO05D006176 4.0e-147 526.2 763 49.3
Eucgr.I02314 Eucalyptus grandis HOM05D004723 ORTHO05D006176 2.0e-146 523.9 708 50.6
CSS0036730 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 3.7e-145 519.6 707 54.3
MELO3C006009.2 Cucumis melo HOM05D004723 ORTHO05D006176 4.9e-145 519.2 747 51.1
CSS0012813 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 6.4e-145 518.8 710 55.8
Lj4A224T28 Lonicera japonica HOM05D004723 ORTHO05D006176 1.1e-144 518.1 719 54.1
Nn5g30820 Nelumbo nucifera HOM05D004723 ORTHO05D006176 2.4e-144 516.9 712 51.4
Nitab4.5_0006899g0060 Nicotiana tabacum HOM05D004723 ORTHO05D006176 2.4e-144 516.9 736 55.8
CiPaw.07G062200 Carya illinoinensis HOM05D004723 ORTHO05D006176 1.2e-143 514.6 742 50.3
Duzib147G1420 Durio zibethinus HOM05D004723 ORTHO05D006176 2.7e-143 513.5 698 51.9
CsaV3_3G007910 Cucumis sativus L. HOM05D004723 ORTHO05D006176 6.6e-142 508.8 739 54.9
Sc07g0001170 Simmondsia chinensis HOM05D004723 ORTHO05D006176 1.5e-141 507.7 689 56.5
MSTRG.10980 Avicennia marina HOM05D004723 ORTHO05D006176 4.3e-141 506.1 734 45.0
Ciclev10025027m.g Citrus clementina HOM05D004723 ORTHO05D006176 4.3e-141 506.1 731 57.0
Gohir.A05G376600 Gossypium hirsutum HOM05D004723 ORTHO05D006176 7.3e-141 505.4 751 48.5
Nitab4.5_0001789g0050 Nicotiana tabacum HOM05D004723 ORTHO05D006176 1.6e-140 504.2 709 58.5
TAR628G1348 Trochodendron aralioides HOM05D004723 ORTHO05D006176 3.6e-140 503.1 672 57.6
Solyc02g083470.3 Solanum lycopersicum HOM05D004723 ORTHO05D006176 1.8e-139 500.7 745 55.7
PGSC0003DMG400003588 Solanum tuberosum HOM05D004723 ORTHO05D006176 8.9e-139 498.4 740 54.2
Peaxi162Scf00198g00136 Petunia axillaris HOM05D004723 ORTHO05D006176 4.9e-137 492.7 711 58.6
ECA232G2222 Erigeron canadensis HOM05D004723 ORTHO05D006176 2.4e-136 490.3 684 50.4
Sopen02g028260 Solanum pennellii HOM05D004723 ORTHO05D006176 3.2e-136 490.0 747 56.4
Cpa.g.sc6.304 Carica papaya HOM05D004723 ORTHO05D006176 5.4e-136 489.2 734 52.6
PGR119G2074 Punica granatum HOM05D004723 ORTHO05D006176 2.7e-135 486.9 760 52.6
CAN.G890.41 Capsicum annuum HOM05D004723 ORTHO05D006176 1.3e-134 484.6 553 54.8
Actinidia35669 Actinidia chinensis HOM05D004723 ORTHO05D006176 1.7e-134 484.2 734 50.0
HanXRQChr09g0257321 Helianthus annuus HOM05D004723 ORTHO05D006176 7.3e-133 478.8 734 49.5
Lalb_Chr16g0391491 Lupinus albus HOM05D004723 ORTHO05D006176 1.3e-132 478.0 705 54.5
arahy.Tifrunner.gnm1.ann1.DG5MW5 Arachis hypogaea HOM05D004723 ORTHO05D006176 6.9e-131 472.2 690 52.2
DCAR_024713 Daucus carota HOM05D004723 ORTHO05D006176 9.9e-130 468.4 764 47.5
PSO541G1155 Papaver somniferum HOM05D004723 ORTHO05D006176 1.3e-129 468.0 740 51.9
PSO675G8954 Papaver somniferum HOM05D004723 ORTHO05D006176 4.9e-129 466.1 727 47.3
Hund14070 Selenicereus undatus HOM05D004723 ORTHO05D006176 8.4e-129 465.3 666 54.8
CANSAT25G3056 Cannabis sativa HOM05D004723 ORTHO05D006176 7.1e-128 462.2 739 53.7
Aqoxy6G02087 Aquilegia oxysepala HOM05D004723 ORTHO05D006176 6.6e-126 455.7 786 48.6
AT3G01160 Arabidopsis thaliana HOM05D004723 ORTHO05D006176 6.6e-126 455.7 735 50.7
arahy.Tifrunner.gnm1.ann1.7VD04T Arachis hypogaea HOM05D004723 ORTHO05D006176 6.6e-126 455.7 690 52.8
EL10Ac6g15170 Beta vulgaris HOM05D004723 ORTHO05D006176 1.1e-125 454.9 707 53.9
Rhsim08G0030800 Rhododendron simsii HOM05D004723 ORTHO05D006176 5.6e-125 452.6 678 49.9
VMungo0251G3240 Vigna mungo HOM05D004723 ORTHO05D006176 5.6e-125 452.6 768 43.8
Psat7g090000 Pisum sativum HOM05D004723 ORTHO05D006176 1.6e-124 451.1 737 44.8
Gohir.1Z049326 Gossypium hirsutum HOM05D004723 ORTHO05D006176 2.8e-124 450.3 722 47.4
Glyma.16G122800 Glycine max HOM05D004723 ORTHO05D006176 6.2e-124 449.1 775 45.3
Lsat_1_v5_gn_4_144101 Lactuca sativa HOM05D004723 ORTHO05D006176 1.4e-123 448.0 706 50.4
Phvul.003G266400 Phaseolus vulgaris HOM05D004723 ORTHO05D006176 5.8e-122 442.6 765 47.8
Ca_18264_v3 Cicer arietinum L. HOM05D004723 ORTHO05D006176 3.8e-121 439.9 705 50.4
Lj4g0028127 Lotus japonicus HOM05D004723 ORTHO05D006176 6.4e-121 439.1 685 52.3
AL3G11100 Arabidopsis lyrata HOM05D004723 ORTHO05D006176 2.4e-120 437.2 762 46.2
Aa31LG5G12460 Aethionema arabicum HOM05D004723 ORTHO05D006176 1.6e-119 434.5 763 57.9
Sp3g00960 Schrenkiella parvula HOM05D004723 ORTHO05D006176 2.7e-119 433.7 724 48.9
Glyma.02G045200 Glycine max HOM05D004723 ORTHO05D006176 1.8e-118 431.0 777 43.8
Migut.F01827 Erythranthe guttata HOM05D004723 ORTHO05D006176 5.1e-118 429.5 550 51.3
Oeu005338.2 Olea europaea HOM05D004723 ORTHO05D006176 2.5e-117 427.2 749 48.5
SGA_v2.0_scaffold111G31425 Striga asiatica HOM05D004723 ORTHO05D006176 7.4e-117 425.6 553 52.3
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 2.8e-116 423.7 714 48.2
Thhalv10020182m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 5.3e-115 419.5 747 49.0
Medtr4g096820 Medicago truncatula HOM05D004723 ORTHO05D006176 9.0e-115 418.7 724 46.8
Carub.0003s0100 Capsella rubella HOM05D004723 ORTHO05D006176 1.0e-113 415.2 739 55.6
AUR62003701 Chenopodium quinoa HOM05D004723 ORTHO05D006176 1.7e-113 414.5 782 44.9
BraA05t23177Z Brassica rapa HOM05D004723 ORTHO05D006176 3.8e-113 413.3 734 50.7
A05p44800 Brassica napus HOM05D004723 ORTHO05D006176 1.1e-112 411.8 735 51.8
vmacro18436 Vaccinium macrocarpon HOM05D004723 ORTHO05D006176 1.3e-110 404.8 713 44.9
BcaC05g30489 Brassica carinata HOM05D004723 ORTHO05D006176 2.5e-109 400.6 726 55.0
AUR62018009 Chenopodium quinoa HOM05D004723 ORTHO05D006176 3.7e-108 396.7 528 48.7
ATR0665G361 Amborella trichopoda HOM05D004723 ORTHO05D006176 6.9e-107 392.5 531 53.5
CARHR075890 Cardamine hirsuta HOM05D004723 ORTHO05D006176 2.0e-106 391.0 736 52.0
Ah.01g003790 Amaranthus hybridus HOM05D004723 ORTHO05D006176 2.6e-106 390.6 704 47.3
C09p75390 Brassica napus HOM05D004723 ORTHO05D006176 3.8e-105 386.7 735 50.6
TPR.G4863 Trifolium pratense HOM05D004723 ORTHO05D006176 3.2e-104 383.6 555 53.9
BolC5t35121H Brassica oleracea HOM05D004723 ORTHO05D006176 5.7e-101 372.9 733 50.8
SEGI_08029 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 7.4e-101 372.5 515 46.8
BcaC05g30387 Brassica carinata HOM05D004723 ORTHO05D006176 2.2e-100 370.9 734 47.5
Dinv40130 Davidia involucrata HOM05D004723 ORTHO05D006176 2.8e-100 370.5 305 64.3
Medtr4g073330 Medicago truncatula HOM05D004723 ORTHO05D006176 5.3e-99 366.3 716 42.9
SHI00027 Sapria himalayana HOM05D004723 ORTHO05D006176 5.5e-96 356.3 643 42.5
Gohir.1Z049627 Gossypium hirsutum HOM05D004723 ORTHO05D006176 4.6e-95 353.2 432 56.0
Os07g0531700 Oryza sativa ssp. japonica HOM05D004723 ORTHO05D006176 1.7e-92 344.7 526 47.9
AagrBONN_evm.TU.Sc2ySwM_117.2822 Anthoceros agrestis HOM05D004723 ORTHO05D006176 1.3e-89 335.1 723 37.3
BcaC01g04506 Brassica carinata HOM05D004723 ORTHO05D006176 1.7e-89 334.7 721 45.9
Zm00001eb323180 Zea mays HOM05D004723 ORTHO05D006176 1.1e-88 332.0 644 48.1
MD15G1238700 Malus domestica HOM05D004723 ORTHO05D006176 2.3e-86 324.3 343 68.5
AagrBONN_evm.TU.Sc2ySwM_368.2747 Anthoceros agrestis HOM05D004723 ORTHO05D006176 1.3e-81 308.5 723 42.5
CDE05G0976 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 2.7e-79 300.8 405 52.8
SMO232G0062 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 6.7e-78 296.2 641 39.5
Thecc.01G155000 Theobroma cacao HOM05D004723 ORTHO05D006176 5.3e-75 286.6 366 55.7
Pp3c17_7210 Physcomitrium patens HOM05D004723 ORTHO05D006176 7.7e-74 282.7 570 41.1
SMO239G0207 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 3.8e-73 280.4 633 35.1
MD15G1238600 Malus domestica HOM05D004723 ORTHO05D006176 4.8e-68 263.5 264 62.1
Mapoly0061s0018 Marchantia polymorpha HOM05D004723 ORTHO05D006176 4.9e-60 236.9 827 28.2
Rhsim08G0030900 Rhododendron simsii HOM05D004723 ORTHO05D006176 1.0e-57 229.2 478 40.0
TAR628G1016 Trochodendron aralioides HOM05D004723 ORTHO05D005421 1.0e-57 229.2 200 60.5
C03p39900 Brassica napus HOM05D004723 ORTHO05D006176 2.0e-53 214.9 200 56.5
HPP92_019125 Vanilla planifolia HOM05D004723 ORTHO05D006176 3.2e-51 207.6 202 50.5
COL.COLO4_33606 Corchorus olitorius HOM05D004723 ORTHO05D006176 7.8e-50 203.0 263 62.0
CBR_g41392 Chara braunii HOM05D004723 ORTHO05D006176 8.6e-49 199.5 706 36.4
Gohir.D04G039432 Gossypium hirsutum HOM05D004723 ORTHO05D006176 2.0e-45 188.3 290 43.4
TPR.G3121 Trifolium pratense HOM05D004723 ORTHO05D006176 9.8e-45 186.0 235 47.7
PRCOL_00004947 Prasinoderma coloniale HOM05D004723 ORTHO05D006176 1.3e-41 175.6 577 30.0
COL.COLO4_34179 Corchorus olitorius HOM05D004723 ORTHO05D006176 3.0e-41 174.5 540 30.6
MCO13G085 Micromonas commoda HOM05D004723 ORTHO05D006176 7.3e-40 169.9 441 32.4
Cre10.g452500 Chlamydomonas reinhardtii HOM05D004723 ORTHO05D006176 9.8e-37 159.5 299 37.1
CDE05G0343 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 7.1e-35 153.3 270 44.8
HPP92_019124 Vanilla planifolia HOM05D004723 ORTHO05D006176 2.3e-33 148.3 214 47.2
BolC3t16253H Brassica oleracea HOM05D004723 ORTHO05D006176 1.2e-26 125.9 111 54.1
TAR628G0893 Trochodendron aralioides HOM05D004723 ORTHO05D006176 2.5e-24 118.2 97 63.9
Medtr3g107330 Medicago truncatula HOM05D004723 ORTHO05D006176 1.4e-22 112.5 237 33.8
Medtr3g107350 Medicago truncatula HOM05D004723 ORTHO05D006176 1.4e-22 112.5 268 42.5
Dinv40131 Davidia involucrata HOM05D004723 ORTHO05D006176 2.0e-21 108.6 119 51.3
Oeu046870.1 Olea europaea HOM05D004723 ORTHO05D006176 4.4e-21 107.5 113 52.2
TPR.G330 Trifolium pratense HOM05D004723 ORTHO05D006176 7.6e-21 106.7 105 51.4
TPR.G36124 Trifolium pratense HOM05D004723 ORTHO05D006176 1.2e-18 99.4 78 60.3
THA.LOC104821168 Tarenaya hassleriana HOM05D004723 ORTHO05D006176 4.6e-18 97.4 147 48.3
GSVIVG01005594001 Vitis vinifera HOM05D004723 ORTHO05D006176 6.0e-18 97.1 208 37.0
AagrBONN_evm.TU.Sc2ySwM_117.2819 Anthoceros agrestis HOM05D004723 ORTHO05D006176 1.3e-17 95.9 323 36.2
Lsat_1_v5_gn_5_164041 Lactuca sativa HOM05D004723 ORTHO05D006176 8.7e-17 93.2 210 33.3
Thhalv10017085m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 8.1e-15 86.7 164 37.2
TPR.G29970 Trifolium pratense HOM05D004723 ORTHO05D006176 1.5e-13 82.4 86 50.0
TPR.G21433 Trifolium pratense HOM05D004723 ORTHO05D006176 2.9e-12 78.2 128 41.4
Actinidia28727 Actinidia chinensis HOM05D004723 ORTHO05D006176 3.8e-12 77.8 100 49.0
GSVIVG01005388001 Vitis vinifera HOM05D004723 ORTHO05D006176 1.4e-11 75.9 119 40.3
FAN17G1680 Fragaria x ananassa HOM05D032679 ORTHO05D022627 7.9e-10 70.1 72 50.0
FAN24G3340 Fragaria x ananassa HOM05D032679 ORTHO05D022627 7.9e-10 70.1 72 50.0
BolC3t16252H Brassica oleracea HOM05D004723 ORTHO05D006176 2.3e-09 68.6 59 59.3
FAN22G1655 Fragaria x ananassa HOM05D002244 ORTHO05D035452 2.3e-09 68.6 60 55.0
FAN03G2005 Fragaria x ananassa HOM05D004723 ORTHO05D002269 3.9e-09 67.8 60 55.0
FAN18G3965 Fragaria x ananassa HOM05D032679 ORTHO05D022627 3.9e-09 67.8 72 48.6
COL.COLO4_33622 Corchorus olitorius HOM05D004723 ORTHO05D006176 1.9e-08 65.5 80 53.8
BolC3t16251H Brassica oleracea HOM05D004723 ORTHO05D019910 4.3e-08 64.3 71 53.5
C03p39890 Brassica napus HOM05D004723 ORTHO05D019910 7.4e-08 63.5 71 53.5
Thecc.01G154900 Theobroma cacao HOM05D004723 ORTHO05D006176 9.6e-08 63.2 84 48.8
C03p39770 Brassica napus HOM05D059891 ORTHO05D040930 3.1e-06 58.2 69 46.4
Nn1g05556 Nelumbo nucifera HOM05D004723 ORTHO05D006176 5.3e-06 57.4 48 58.3


User provided reference genes

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