Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0098561 Rosa chinensis HOM05D001112 ORTHO05D037967 1.8e-41 172.2 88 100.0
RcHm_v2.0_Chr2g0098531 Rosa chinensis HOM05D001112 ORTHO05D000996 6.9e-41 170.2 88 98.9
RcHm_v2.0_Chr2g0098521 Rosa chinensis HOM05D001112 ORTHO05D000996 1.8e-33 145.6 93 83.9
FvH4_1g11190 Fragaria vesca HOM05D001112 ORTHO05D000996 4.8e-26 120.9 93 73.1
FAN26G1865 Fragaria x ananassa HOM05D001112 ORTHO05D000996 1.4e-25 119.4 78 76.9
FAN28G2259 Fragaria x ananassa HOM05D001112 ORTHO05D000996 1.4e-25 119.4 93 73.1
FAN19G1113 Fragaria x ananassa HOM05D001112 ORTHO05D000996 2.5e-22 108.6 83 71.1
Prupe.7G173900 Prunus persica HOM05D001112 ORTHO05D000996 6.7e-20 100.5 92 63.0
MD02G1124400 Malus domestica HOM05D001112 ORTHO05D000996 3.1e-17 91.7 90 60.0
MD15G1238500 Malus domestica HOM05D001112 ORTHO05D000996 5.3e-17 90.9 98 60.2
GSVIVG01007227001 Vitis vinifera HOM05D001112 ORTHO05D000996 1.2e-16 89.7 93 58.1
MD02G1124500 Malus domestica HOM05D001112 ORTHO05D000996 1.5e-16 89.4 92 59.8
Actinidia22945 Actinidia chinensis HOM05D001112 ORTHO05D000996 3.8e-15 84.7 94 51.1
CiPaw.08G127300 Carya illinoinensis HOM05D001112 ORTHO05D000996 3.8e-15 84.7 93 51.6
CANSAT01G2075 Cannabis sativa HOM05D001112 ORTHO05D000996 6.5e-15 84.0 92 50.0
vmacro18437 Vaccinium macrocarpon HOM05D001112 ORTHO05D000996 1.1e-14 83.2 86 53.5
CiPaw.08G127400 Carya illinoinensis HOM05D001112 ORTHO05D000996 2.5e-14 82.0 93 49.5
Dinv40138 Davidia involucrata HOM05D001112 ORTHO05D000996 2.5e-14 82.0 92 53.3
CiPaw.08G126100 Carya illinoinensis HOM05D001112 ORTHO05D000996 5.5e-14 80.9 97 48.5
CSS0000013 Camellia sinensis var. sinensis HOM05D001112 ORTHO05D000996 7.2e-14 80.5 88 54.5
CSS0049231 Camellia sinensis var. sinensis HOM05D001112 ORTHO05D000996 7.2e-14 80.5 88 54.5
RcHm_v2.0_Chr2g0098601 Rosa chinensis HOM05D001112 ORTHO05D000996 1.6e-13 79.3 50 76.0
CiPaw.07G062300 Carya illinoinensis HOM05D001112 ORTHO05D000996 2.1e-13 79.0 89 47.2
Duzib264G0734 Durio zibethinus HOM05D001112 ORTHO05D000996 2.7e-13 78.6 92 47.8
QL06p051593 Quercus lobata HOM05D001112 ORTHO05D000996 1.0e-12 76.6 88 45.5
Cfa007060 Carpinus fangiana HOM05D000356 ORTHO05D000265 1.4e-12 76.3 76 55.3
Manes.02G109500 Manihot esculenta HOM05D001112 ORTHO05D000996 2.3e-12 75.5 90 52.2
QL06p051422 Quercus lobata HOM05D001112 ORTHO05D000996 2.3e-12 75.5 90 52.2
Actinidia28728 Actinidia chinensis HOM05D001112 ORTHO05D000996 3.9e-12 74.7 89 49.4
QL06p051484 Quercus lobata HOM05D001112 ORTHO05D000996 6.7e-12 73.9 94 42.6
Thecc.01G012700 Theobroma cacao HOM05D001112 ORTHO05D000996 6.7e-12 73.9 92 48.9
Cfa007022 Carpinus fangiana HOM05D001112 ORTHO05D000996 1.1e-11 73.2 96 42.7
QL06p051509 Quercus lobata HOM05D001112 ORTHO05D000996 2.5e-11 72.0 90 42.2
arahy.Tifrunner.gnm1.ann1.T7UW22 Arachis hypogaea HOM05D001112 ORTHO05D000996 5.7e-11 70.9 86 53.5
arahy.Tifrunner.gnm1.ann1.VWF79Z Arachis hypogaea HOM05D001112 ORTHO05D000996 5.7e-11 70.9 86 53.5
Sabra05G0089100 Salix brachista HOM05D001112 ORTHO05D000996 5.7e-11 70.9 91 46.2
Cpa.g.sc6.305 Carica papaya HOM05D001112 ORTHO05D000996 7.4e-11 70.5 82 50.0
Medtr5g022880 Medicago truncatula HOM05D001112 ORTHO05D000996 7.4e-11 70.5 90 46.7
Haze_03711 Corylus avellana HOM05D001112 ORTHO05D000996 9.7e-11 70.1 91 47.3
Haze_09865 Corylus avellana HOM05D001112 ORTHO05D000996 1.3e-10 69.7 88 43.2
Glyma.01G163000 Glycine max HOM05D001112 ORTHO05D000996 1.3e-10 69.7 88 46.6
QL06p051456 Quercus lobata HOM05D001112 ORTHO05D000996 1.3e-10 69.7 87 46.0
Lj4g0022808 Lotus japonicus HOM05D001112 ORTHO05D000996 1.7e-10 69.3 90 47.8
PGSC0003DMG400003655 Solanum tuberosum HOM05D001112 ORTHO05D000996 1.7e-10 69.3 101 44.6
CAN.G890.40 Capsicum annuum HOM05D001112 ORTHO05D000996 2.2e-10 68.9 100 44.0
Potri.005G108700 Populus trichocarpa HOM05D001112 ORTHO05D000996 2.2e-10 68.9 90 42.2
COL.COLO4_22484 Corchorus olitorius HOM05D001112 ORTHO05D000996 2.8e-10 68.6 92 45.7
Duzib147G1546 Durio zibethinus HOM05D001112 ORTHO05D000996 2.8e-10 68.6 92 42.4
Ciclev10025374m.g Citrus clementina HOM05D001112 ORTHO05D000996 3.7e-10 68.2 86 48.8
Lj4A224T30 Lonicera japonica HOM05D001112 ORTHO05D000996 3.7e-10 68.2 101 42.6
Gorai.003G006500 Gossypium raimondii HOM05D001112 ORTHO05D000996 4.8e-10 67.8 67 50.7
Haze_03679 Corylus avellana HOM05D000356 ORTHO05D000265 6.3e-10 67.4 84 50.0
Dinv40134 Davidia involucrata HOM05D001112 ORTHO05D000996 6.3e-10 67.4 87 48.3
TPR.G25141 Trifolium pratense HOM05D001112 ORTHO05D000996 6.3e-10 67.4 86 47.7
Gohir.A11G172500 Gossypium hirsutum HOM05D001112 ORTHO05D000996 8.2e-10 67.0 94 44.7
Gorai.007G191400 Gossypium raimondii HOM05D001112 ORTHO05D000996 8.2e-10 67.0 94 44.7
Lj2g0016442 Lotus japonicus HOM05D001112 ORTHO05D000996 8.2e-10 67.0 89 50.6
Gohir.D03G006200 Gossypium hirsutum HOM05D001112 ORTHO05D000996 1.1e-09 66.6 84 44.0
CiPaw.07G062400 Carya illinoinensis HOM05D001112 ORTHO05D000996 1.4e-09 66.2 85 43.5
ECA232G0295 Erigeron canadensis HOM05D001112 ORTHO05D000996 1.4e-09 66.2 85 42.4
HanXRQChr09g0257311 Helianthus annuus HOM05D001112 ORTHO05D000996 1.4e-09 66.2 85 43.5
Sopen02g028250 Solanum pennellii HOM05D001112 ORTHO05D000996 1.4e-09 66.2 101 44.6
CiPaw.07G062500 Carya illinoinensis HOM05D001112 ORTHO05D000996 1.8e-09 65.9 92 47.8
Lalb_Chr09g0321481 Lupinus albus HOM05D001112 ORTHO05D000996 2.4e-09 65.5 63 57.1
CsaV3_3G000570 Cucumis sativus L. HOM05D001112 ORTHO05D000996 3.1e-09 65.1 71 46.5
Lsat_1_v5_gn_4_144080 Lactuca sativa HOM05D001112 ORTHO05D000996 4.1e-09 64.7 67 49.3
Psat2g152320 Pisum sativum HOM05D001112 ORTHO05D000996 4.1e-09 64.7 89 48.3
arahy.Tifrunner.gnm1.ann1.VYR2NH Arachis hypogaea HOM05D001112 ORTHO05D000996 5.3e-09 64.3 84 45.2
TWI73G0610 Tripterygium wilfordii HOM05D001112 ORTHO05D000996 5.3e-09 64.3 68 50.0
ClCG10G000500 Citrullus lanatus HOM05D001112 ORTHO05D000996 6.9e-09 63.9 94 40.4
Solyc02g083460.3 Solanum lycopersicum HOM05D001112 ORTHO05D000996 6.9e-09 63.9 100 44.0
TAR628G1170 Trochodendron aralioides HOM05D001112 ORTHO05D000996 6.9e-09 63.9 93 45.2
CSS0039745 Camellia sinensis var. sinensis HOM05D001112 ORTHO05D000996 9.1e-09 63.5 93 50.5
Glyma.11G080400 Glycine max HOM05D001112 ORTHO05D000996 9.1e-09 63.5 86 48.8
Dinv40136 Davidia involucrata HOM05D001112 ORTHO05D000996 1.2e-08 63.2 91 46.2
Gohir.D11G179400 Gossypium hirsutum HOM05D001112 ORTHO05D000996 1.2e-08 63.2 94 43.6
Rhsim08G0030700 Rhododendron simsii HOM05D001112 ORTHO05D000996 1.2e-08 63.2 91 45.1
Phvul.002G105200 Phaseolus vulgaris HOM05D001112 ORTHO05D000996 1.5e-08 62.8 82 50.0
VMungo1215G3039 Vigna mungo HOM05D001112 ORTHO05D000996 1.5e-08 62.8 88 47.7
Aqoxy6G02078 Aquilegia oxysepala HOM05D001112 ORTHO05D000996 2.0e-08 62.4 99 38.4
arahy.Tifrunner.gnm1.ann1.D9U3VU Arachis hypogaea HOM05D001112 ORTHO05D000996 2.0e-08 62.4 84 44.0
TAR376G0655 Trochodendron aralioides HOM05D001112 ORTHO05D000996 2.0e-08 62.4 118 35.6
BcaB08g34760 Brassica carinata HOM05D001112 ORTHO05D000996 2.6e-08 62.0 67 56.7
CiPaw.08G127100 Carya illinoinensis HOM05D001112 ORTHO05D000996 2.6e-08 62.0 47 55.3
MSTRG.28005 Avicennia marina HOM05D001112 ORTHO05D000996 3.4e-08 61.6 92 44.6
MBI05_g18074_MAGBIO Magnolia biondii HOM05D001112 ORTHO05D000996 3.4e-08 61.6 61 50.8
Oeu038246.1 Olea europaea HOM05D001112 ORTHO05D000996 3.4e-08 61.6 101 37.6
Actinidia35670 Actinidia chinensis HOM05D001112 ORTHO05D037967 4.5e-08 61.2 90 45.6
A06p33610 Brassica napus HOM05D001112 ORTHO05D000996 4.5e-08 61.2 67 58.2
BraA06t26298Z Brassica rapa HOM05D001112 ORTHO05D000996 4.5e-08 61.2 67 58.2
Eucgr.J02485 Eucalyptus grandis HOM05D001112 ORTHO05D000996 4.5e-08 61.2 92 44.6
BcaC06g36312 Brassica carinata HOM05D001112 ORTHO05D000996 5.9e-08 60.8 67 55.2
A07p03220 Brassica napus HOM05D001112 ORTHO05D000996 5.9e-08 60.8 67 55.2
BolC7t40951H Brassica oleracea HOM05D001112 ORTHO05D000996 5.9e-08 60.8 67 55.2
BraA07t28120Z Brassica rapa HOM05D001112 ORTHO05D000996 5.9e-08 60.8 67 55.2
Eucgr.I02313 Eucalyptus grandis HOM05D001112 ORTHO05D000996 7.7e-08 60.5 89 39.3
Nn6g31934 Nelumbo nucifera HOM05D001112 ORTHO05D000996 7.7e-08 60.5 60 48.3
Oeu027740.2 Olea europaea HOM05D001112 ORTHO05D000996 7.7e-08 60.5 73 43.8
TWI09G0194 Tripterygium wilfordii HOM05D001112 ORTHO05D000996 7.7e-08 60.5 86 41.9
C07p05510 Brassica napus HOM05D001112 ORTHO05D000996 1.0e-07 60.1 65 55.4
Cc07_g11230 Coffea canephora HOM05D001112 ORTHO05D000996 1.0e-07 60.1 98 39.8
DCAR_010135 Daucus carota HOM05D001112 ORTHO05D000996 1.0e-07 60.1 79 44.3
Nitab4.5_0006899g0030 Nicotiana tabacum HOM05D001112 ORTHO05D000996 1.3e-07 59.7 108 39.8
Sed0019637 Sechium edule HOM05D001112 ORTHO05D000996 1.3e-07 59.7 72 41.7
AT2G17760 Arabidopsis thaliana HOM05D001112 ORTHO05D000996 1.7e-07 59.3 87 46.0
BcaB03g16549 Brassica carinata HOM05D001112 ORTHO05D000996 1.7e-07 59.3 67 53.7
VMungo0251G2571 Vigna mungo HOM05D001112 ORTHO05D000996 1.7e-07 59.3 73 42.5
Carub.0003s3189 Capsella rubella HOM05D001112 ORTHO05D000996 2.2e-07 58.9 65 53.8
QL06p051774 Quercus lobata HOM05D001112 ORTHO05D000996 2.2e-07 58.9 100 39.0
TAR625G0676 Trochodendron aralioides HOM05D001112 ORTHO05D000996 2.2e-07 58.9 70 45.7
BcaC01g02888 Brassica carinata HOM05D001112 ORTHO05D000996 3.8e-07 58.2 67 55.2
SalBow3G0593 Salvia bowleyana HOM05D001112 ORTHO05D000996 3.8e-07 58.2 97 38.1
PGR102G2664 Punica granatum HOM05D001112 ORTHO05D000996 5.0e-07 57.8 91 46.2
QL06p051437 Quercus lobata HOM05D001112 ORTHO05D000996 5.0e-07 57.8 38 65.8
THA.LOC104819737 Tarenaya hassleriana HOM05D001112 ORTHO05D000996 5.0e-07 57.8 52 59.6
Lalb_Chr16g0391501 Lupinus albus HOM05D001112 ORTHO05D000996 6.5e-07 57.4 84 45.2
Os09g0542100 Oryza sativa ssp. japonica HOM05D001112 ORTHO05D000996 6.5e-07 57.4 92 40.2
TPR.G19482 Trifolium pratense HOM05D001112 ORTHO05D000996 6.5e-07 57.4 90 41.1
ECA232G2011 Erigeron canadensis HOM05D001112 ORTHO05D000996 8.5e-07 57.0 81 43.2
HanXRQChr09g0257261 Helianthus annuus HOM05D001112 ORTHO05D000996 8.5e-07 57.0 44 56.8
Sp3g31170 Schrenkiella parvula HOM05D001112 ORTHO05D000996 8.5e-07 57.0 86 46.5
Nn5g30825 Nelumbo nucifera HOM05D001112 ORTHO05D000996 1.1e-06 56.6 91 41.8
C03p58730 Brassica napus HOM05D001112 ORTHO05D000996 1.9e-06 55.8 88 46.6
Phvul.003G266600 Phaseolus vulgaris HOM05D001112 ORTHO05D000996 1.9e-06 55.8 74 43.2
Psat4g102360 Pisum sativum HOM05D001112 ORTHO05D000996 1.9e-06 55.8 88 38.6
Sc07g0001180 Simmondsia chinensis HOM05D001112 ORTHO05D000996 1.9e-06 55.8 84 38.1
Aqoxy5G01832 Aquilegia oxysepala HOM05D001112 ORTHO05D000996 2.5e-06 55.5 90 38.9
BolC3t18131H Brassica oleracea HOM05D001112 ORTHO05D000996 2.5e-06 55.5 67 53.7
CARHR108130 Cardamine hirsuta HOM05D001112 ORTHO05D000996 2.5e-06 55.5 64 53.1
Ca_24938_v3 Cicer arietinum L. HOM05D001112 ORTHO05D000996 2.5e-06 55.5 92 40.2
Cc07_g11240 Coffea canephora HOM05D001112 ORTHO05D000996 2.5e-06 55.5 68 47.1
Gohir.A11G172300 Gossypium hirsutum HOM05D001112 ORTHO05D000996 2.5e-06 55.5 91 42.9
Peaxi162Scf00328g00218 Petunia axillaris HOM05D001112 ORTHO05D000996 2.5e-06 55.5 97 44.3
MSTRG.5108 Avicennia marina HOM05D001112 ORTHO05D000996 3.2e-06 55.1 69 47.8
Medtr8g075090 Medicago truncatula HOM05D001112 ORTHO05D000996 3.2e-06 55.1 89 40.4
Dinv08557 Davidia involucrata HOM05D001112 ORTHO05D000996 4.2e-06 54.7 68 41.2
Phvul.003G266500 Phaseolus vulgaris HOM05D001112 ORTHO05D000996 4.2e-06 54.7 63 46.0
THA.LOC104821344 Tarenaya hassleriana HOM05D001112 ORTHO05D000996 4.2e-06 54.7 35 60.0
Migut.N01964 Erythranthe guttata HOM05D001112 ORTHO05D000996 5.5e-06 54.3 104 40.4
Thhalv10022648m.g Eutrema salsugineum HOM05D001112 ORTHO05D000996 5.5e-06 54.3 64 51.6
Lsat_1_v5_gn_4_144520 Lactuca sativa HOM05D001112 ORTHO05D000996 5.5e-06 54.3 44 52.3
Ah.02g123350 Amaranthus hybridus HOM05D001112 ORTHO05D000996 7.2e-06 53.9 82 39.0
Ah.03g143220 Amaranthus hybridus HOM05D001112 ORTHO05D000996 7.2e-06 53.9 64 45.3
AT4G35880 Arabidopsis thaliana HOM05D001112 ORTHO05D000996 7.2e-06 53.9 45 48.9
Carub.0007s0435 Capsella rubella HOM05D001112 ORTHO05D000996 7.2e-06 53.9 45 48.9
CARHR244270 Cardamine hirsuta HOM05D001112 ORTHO05D000996 7.2e-06 53.9 45 48.9
Lj4A225T60 Lonicera japonica HOM05D001112 ORTHO05D000996 7.2e-06 53.9 45 51.1
AL7G15170 Arabidopsis lyrata HOM05D001112 ORTHO05D000996 9.4e-06 53.5 45 48.9
CDE04G0468 Ceratophyllum demersum HOM05D005442 ORTHO05D000996 9.4e-06 53.5 38 55.3


User provided reference genes

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