Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0098351 Rosa chinensis HOM05D003374 ORTHO05D009470 3.4e-84 315.1 172 100.0
FvH4_1g11080 Fragaria vesca HOM05D003374 ORTHO05D009470 6.6e-72 274.2 172 88.4
FAN28G2426 Fragaria x ananassa HOM05D003374 ORTHO05D009470 4.3e-71 271.6 172 88.4
FAN23G1041 Fragaria x ananassa HOM05D003374 ORTHO05D009470 5.6e-71 271.2 172 88.4
FAN26G1101 Fragaria x ananassa HOM05D003374 ORTHO05D009470 3.1e-69 265.4 172 87.8
FAN19G0939 Fragaria x ananassa HOM05D003374 ORTHO05D009470 5.8e-68 261.2 185 81.6
MD15G1237400 Malus domestica HOM05D003374 ORTHO05D009470 3.1e-53 212.2 173 70.5
Prupe.7G175000 Prunus persica HOM05D003374 ORTHO05D009470 6.4e-51 204.5 177 66.1
Cfa007029 Carpinus fangiana HOM05D003374 ORTHO05D009470 1.3e-48 196.8 174 62.1
QL06p052079 Quercus lobata HOM05D003374 ORTHO05D009470 5.1e-48 194.9 138 68.8
Haze_03703 Corylus avellana HOM05D003374 ORTHO05D009415 8.7e-48 194.1 176 61.4
CiPaw.08G125800 Carya illinoinensis HOM05D003374 ORTHO05D009470 1.3e-46 190.3 175 61.1
Thecc.01G011500 Theobroma cacao HOM05D003374 ORTHO05D009470 1.3e-46 190.3 179 64.2
Manes.02G110400 Manihot esculenta HOM05D003374 ORTHO05D009470 4.0e-45 185.3 172 62.2
TWI73G0454 Tripterygium wilfordii HOM05D003374 ORTHO05D009470 4.0e-45 185.3 141 64.5
Atru.chr3.907 Acer truncatum HOM05D003374 ORTHO05D009470 1.9e-42 176.4 139 64.0
Duzib145G0002 Durio zibethinus HOM05D003374 ORTHO05D009470 2.4e-42 176.0 142 64.8
Gohir.A02G174300 Gossypium hirsutum HOM05D003374 ORTHO05D009470 5.5e-42 174.9 139 65.5
Potri.005G107800 Populus trichocarpa HOM05D003374 ORTHO05D009470 7.1e-42 174.5 173 60.1
Gohir.D03G005500 Gossypium hirsutum HOM05D003374 ORTHO05D009470 2.7e-41 172.6 142 64.1
Gorai.003G005900 Gossypium raimondii HOM05D003374 ORTHO05D009470 2.7e-41 172.6 142 64.1
Sabra05G0088300 Salix brachista HOM05D003374 ORTHO05D009470 7.9e-41 171.0 142 63.4
Cpa.g.sc6.313 Carica papaya HOM05D003374 ORTHO05D009470 1.3e-40 170.2 173 54.9
Ciclev10026638m.g Citrus clementina HOM05D003374 ORTHO05D009470 1.3e-40 170.2 173 57.8
Eucgr.I02305 Eucalyptus grandis HOM05D003374 ORTHO05D009470 6.7e-40 167.9 147 62.6
Phvul.002G104800 Phaseolus vulgaris HOM05D003374 ORTHO05D009470 4.3e-39 165.2 175 54.9
Hma1.2p1_0315F.1_g122600 Hydrangea macrophylla HOM05D003374 ORTHO05D009470 9.6e-39 164.1 128 64.8
Ca_24942_v3 Cicer arietinum L. HOM05D003374 ORTHO05D009470 3.7e-38 162.2 180 55.0
CANSAT01G1253 Cannabis sativa HOM05D003374 ORTHO05D009470 1.1e-37 160.6 143 62.9
Medtr5g022970 Medicago truncatula HOM05D003374 ORTHO05D009470 1.4e-37 160.2 147 57.1
PGR102G2171 Punica granatum HOM05D003374 ORTHO05D009470 1.4e-37 160.2 143 58.7
Glyma.11G080800 Glycine max HOM05D003374 ORTHO05D009470 5.3e-37 158.3 148 54.7
Lalb_Chr09g0321441 Lupinus albus HOM05D003374 ORTHO05D009470 2.0e-36 156.4 139 60.4
Lj2g0014457 Lotus japonicus HOM05D003374 ORTHO05D009470 4.5e-36 155.2 140 57.9
Dinv08548 Davidia involucrata HOM05D003374 ORTHO05D009470 3.8e-35 152.1 172 56.4
Lalb_Chr05g0212181 Lupinus albus HOM05D003374 ORTHO05D009470 2.5e-34 149.4 138 61.6
Rhsim10G0205800 Rhododendron simsii HOM05D003374 ORTHO05D009470 2.5e-34 149.4 135 60.0
vmacro20496 Vaccinium macrocarpon HOM05D003374 ORTHO05D009470 5.5e-34 148.3 133 58.6
Glyma.01G162500 Glycine max HOM05D003374 ORTHO05D009470 1.2e-33 147.1 147 53.7
VMungo1215G1047 Vigna mungo HOM05D003374 ORTHO05D009470 1.2e-33 147.1 129 60.5
Cc07_g11310 Coffea canephora HOM05D003374 ORTHO05D009470 1.5e-31 140.2 181 51.9
Cc08_g04880 Coffea canephora HOM05D003374 ORTHO05D009470 1.5e-31 140.2 181 51.9
TAR625G1139 Trochodendron aralioides HOM05D003374 ORTHO05D009470 3.3e-31 139.0 137 54.7
PSO541G4788 Papaver somniferum HOM05D003374 ORTHO05D009470 7.4e-31 137.9 134 59.0
PSO675G4674 Papaver somniferum HOM05D003374 ORTHO05D009470 7.4e-31 137.9 134 59.0
CDE05G2149 Ceratophyllum demersum HOM05D003374 ORTHO05D009470 2.2e-30 136.3 131 57.3
THA.LOC104819731 Tarenaya hassleriana HOM05D003374 ORTHO05D009470 3.7e-30 135.6 135 55.6
CSS0026426 Camellia sinensis var. sinensis HOM05D003374 ORTHO05D009415 4.8e-30 135.2 180 51.1
Sp3g31120 Schrenkiella parvula HOM05D003374 ORTHO05D009470 8.2e-30 134.4 171 50.3
Nitab4.5_0006892g0010 Nicotiana tabacum HOM05D003374 ORTHO05D009470 1.4e-29 133.7 177 46.3
Thhalv10022897m.g Eutrema salsugineum HOM05D003374 ORTHO05D009470 1.8e-29 133.3 131 54.2
CDE05G3297 Ceratophyllum demersum HOM05D003374 ORTHO05D009470 2.4e-29 132.9 130 53.8
C07p05580 Brassica napus HOM05D003374 ORTHO05D009470 3.1e-29 132.5 141 52.5
CARHR108000 Cardamine hirsuta HOM05D003374 ORTHO05D009470 3.1e-29 132.5 141 53.2
MBI09_g46000_MAGBIO Magnolia biondii HOM05D003374 ORTHO05D009470 3.1e-29 132.5 159 54.1
Nitab4.5_0002105g0080 Nicotiana tabacum HOM05D003374 ORTHO05D009470 3.1e-29 132.5 176 46.0
BraA07t28128Z Brassica rapa HOM05D003374 ORTHO05D009470 6.9e-29 131.3 171 50.3
GSVIVG01005193001 Vitis vinifera HOM05D003374 ORTHO05D009470 9.0e-29 131.0 111 61.3
BcaC06g36303 Brassica carinata HOM05D003374 ORTHO05D009470 1.5e-28 130.2 141 52.5
AT2G17710 Arabidopsis thaliana HOM05D003374 ORTHO05D009470 2.0e-28 129.8 131 54.2
AL3G50710 Arabidopsis lyrata HOM05D003374 ORTHO05D009470 3.4e-28 129.0 131 54.2
PGSC0003DMG400003663 Solanum tuberosum HOM05D003374 ORTHO05D009470 3.4e-28 129.0 171 49.7
BcaB03g16544 Brassica carinata HOM05D003374 ORTHO05D009470 4.5e-28 128.6 131 55.0
Aa31LG8G14990 Aethionema arabicum HOM05D003374 ORTHO05D009470 5.9e-28 128.3 129 54.3
BolC7t40958H Brassica oleracea HOM05D003374 ORTHO05D009415 1.0e-27 127.5 143 51.7
MSTRG.22233 Avicennia marina HOM05D003374 ORTHO05D009470 1.3e-27 127.1 118 53.4
BcaB08g34755 Brassica carinata HOM05D003374 ORTHO05D009470 1.3e-27 127.1 171 48.5
Carub.0003s3182 Capsella rubella HOM05D003374 ORTHO05D009470 1.3e-27 127.1 131 54.2
BcaC01g02894 Brassica carinata HOM05D003374 ORTHO05D009470 3.8e-27 125.6 171 48.0
BolC3t18125H Brassica oleracea HOM05D003374 ORTHO05D009470 3.8e-27 125.6 171 48.0
Duzib147G0965 Durio zibethinus HOM05D003374 ORTHO05D009470 3.8e-27 125.6 114 59.6
C03p58640 Brassica napus HOM05D003374 ORTHO05D009470 5.0e-27 125.2 131 54.2
CAN.G890.28 Capsicum annuum HOM05D003374 ORTHO05D009470 6.5e-27 124.8 169 48.5
Sopen02g028160 Solanum pennellii HOM05D003374 ORTHO05D009470 1.1e-26 124.0 171 47.4
THA.LOC104804280 Tarenaya hassleriana HOM05D003374 ORTHO05D009470 1.4e-26 123.6 184 42.9
A06p33690 Brassica napus HOM05D003374 ORTHO05D009470 3.2e-26 122.5 171 47.4
BraA06t26303Z Brassica rapa HOM05D003374 ORTHO05D009470 3.2e-26 122.5 171 47.4
Potri.005G107900 Populus trichocarpa HOM05D003374 ORTHO05D009470 5.5e-26 121.7 115 60.9
Peaxi162Scf00328g00118 Petunia axillaris HOM05D003374 ORTHO05D009470 9.3e-26 120.9 131 53.4
Actinidia22937 Actinidia chinensis HOM05D003374 ORTHO05D009470 8.7e-24 114.4 104 62.5
AUR62012999 Chenopodium quinoa HOM05D003374 ORTHO05D009470 8.7e-24 114.4 123 55.3
Migut.N02761 Erythranthe guttata HOM05D003374 ORTHO05D009470 8.7e-24 114.4 129 50.4
Oeu022073.1 Olea europaea HOM05D003374 ORTHO05D009470 1.1e-23 114.0 132 51.5
Aqoxy6G01986 Aquilegia oxysepala HOM05D003374 ORTHO05D009470 1.9e-23 113.2 103 56.3
EL10Ac9g21336 Beta vulgaris HOM05D003374 ORTHO05D009470 3.3e-23 112.5 123 55.3
MSTRG.24362 Avicennia marina HOM05D003374 ORTHO05D009470 1.3e-22 110.5 124 46.0
SalBow6G5967 Salvia bowleyana HOM05D003374 ORTHO05D009470 1.1e-21 107.5 96 60.4
SalBow8G5385 Salvia bowleyana HOM05D003374 ORTHO05D009470 4.5e-20 102.1 95 58.9
arahy.Tifrunner.gnm1.ann1.HG61QK Arachis hypogaea HOM05D003374 ORTHO05D009470 7.7e-20 101.3 97 56.7
arahy.Tifrunner.gnm1.ann1.YP763J Arachis hypogaea HOM05D003374 ORTHO05D009470 7.7e-20 101.3 97 56.7
COL.COLO4_22495 Corchorus olitorius HOM05D003374 ORTHO05D009470 8.5e-19 97.8 91 64.8
TPR.G20269 Trifolium pratense HOM05D003374 ORTHO05D009470 5.5e-18 95.1 90 55.6
Sc18g0006270 Simmondsia chinensis HOM05D003374 ORTHO05D009470 6.1e-17 91.7 82 59.8
unitig_578.g16135 Utricularia gibba HOM05D003374 ORTHO05D009470 2.3e-16 89.7 95 50.5
Hund00012 Selenicereus undatus HOM05D003374 ORTHO05D009470 2.0e-15 86.7 108 50.9
Actinidia17405 Actinidia chinensis HOM05D000373 ORTHO05D001763 1.8e-13 80.1 127 51.2
TPR.G25136 Trifolium pratense HOM05D000373 ORTHO05D001763 2.4e-13 79.7 122 42.6
A07p03300 Brassica napus HOM05D003374 ORTHO05D009415 4.1e-13 79.0 92 51.1
ATR0346G001 Amborella trichopoda HOM05D003374 ORTHO05D009470 5.9e-12 75.1 91 50.5
Solyc02g083380.3 Solanum lycopersicum HOM05D003374 ORTHO05D009470 6.5e-11 71.6 63 57.1
Ah.01g008140 Amaranthus hybridus HOM05D003374 ORTHO05D009470 8.5e-11 71.2 88 52.3
Duzib145G0007 Durio zibethinus HOM05D003374 ORTHO05D009470 3.6e-09 65.9 61 57.4
AUR62010008 Chenopodium quinoa HOM05D003374 ORTHO05D010386 2.3e-08 63.2 85 47.1


User provided reference genes

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