Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0098181 Rosa chinensis HOM05D005912 ORTHO05D007329 2.0e-206 722.2 373 100.0
FvH4_1g10920 Fragaria vesca HOM05D005912 ORTHO05D007329 1.1e-185 653.3 373 91.4
FAN26G2135 Fragaria x ananassa HOM05D005912 ORTHO05D007329 9.6e-185 650.2 373 91.2
FAN23G1227 Fragaria x ananassa HOM05D005912 ORTHO05D007329 1.5e-182 642.9 373 90.6
Prupe.7G176300 Prunus persica HOM05D005912 ORTHO05D007329 3.0e-154 548.9 372 79.6
MD02G1122300 Malus domestica HOM05D005912 ORTHO05D007329 3.7e-152 542.0 376 76.3
CiPaw.08G179600 Carya illinoinensis HOM05D005912 ORTHO05D007329 4.8e-128 461.8 369 67.8
Cfa007040 Carpinus fangiana HOM05D005912 ORTHO05D007329 5.4e-127 458.4 377 66.6
Haze_03689 Corylus avellana HOM05D005912 ORTHO05D007329 3.5e-126 455.7 375 66.4
Sabra05G0087400 Salix brachista HOM05D005912 ORTHO05D007329 1.8e-122 443.4 376 64.6
Potri.005G106500 Populus trichocarpa HOM05D005912 ORTHO05D007329 1.7e-120 436.8 377 63.4
Dinv40154 Davidia involucrata HOM05D005912 ORTHO05D007329 2.8e-120 436.0 366 64.5
QL06p052316 Quercus lobata HOM05D005912 ORTHO05D007329 4.9e-120 435.3 306 73.5
TAR625G0585 Trochodendron aralioides HOM05D005912 ORTHO05D007329 2.9e-117 426.0 363 63.9
Gorai.003G004900 Gossypium raimondii HOM05D005912 ORTHO05D007329 1.5e-116 423.7 336 65.8
Gohir.A02G175200 Gossypium hirsutum HOM05D005912 ORTHO05D007329 2.5e-116 422.9 361 62.9
Gohir.D03G004600 Gossypium hirsutum HOM05D005912 ORTHO05D007329 7.3e-116 421.4 361 62.6
Thecc.01G010100 Theobroma cacao HOM05D005912 ORTHO05D007329 1.6e-115 420.2 374 62.3
COL.COLO4_09868 Corchorus olitorius HOM05D005912 ORTHO05D007329 2.8e-115 419.5 335 66.0
Atru.chr3.926 Acer truncatum HOM05D005912 ORTHO05D007329 3.0e-114 416.0 361 63.2
PGR102G2191 Punica granatum HOM05D005912 ORTHO05D007329 4.0e-114 415.6 332 65.7
Cc07_g11440 Coffea canephora HOM05D005912 ORTHO05D007329 3.4e-113 412.5 350 63.1
arahy.Tifrunner.gnm1.ann1.JJKM7S Arachis hypogaea HOM05D005912 ORTHO05D007329 5.7e-113 411.8 359 61.6
arahy.Tifrunner.gnm1.ann1.TNL2KY Arachis hypogaea HOM05D005912 ORTHO05D007329 5.7e-113 411.8 359 61.6
Duzib147G0472 Durio zibethinus HOM05D005912 ORTHO05D007329 4.9e-112 408.7 336 64.9
Glyma.11G082400 Glycine max HOM05D005912 ORTHO05D007329 4.9e-112 408.7 365 62.5
vmacro20502 Vaccinium macrocarpon HOM05D005912 ORTHO05D007329 4.9e-112 408.7 378 59.8
TWI73G1263 Tripterygium wilfordii HOM05D005912 ORTHO05D007329 6.4e-112 408.3 337 62.3
Actinidia17396 Actinidia chinensis HOM05D005912 ORTHO05D007329 8.3e-112 407.9 364 59.9
ClCG01G020670 Citrullus lanatus HOM05D005912 ORTHO05D007329 8.3e-112 407.9 359 61.3
Psat2g151360 Pisum sativum HOM05D005912 ORTHO05D007329 1.2e-110 404.1 362 62.4
Phvul.002G112700 Phaseolus vulgaris HOM05D005912 ORTHO05D007329 1.3e-109 400.6 311 66.2
Eucgr.J02496 Eucalyptus grandis HOM05D005912 ORTHO05D007329 2.3e-109 399.8 298 67.8
Nn6g31870 Nelumbo nucifera HOM05D005912 ORTHO05D007329 6.6e-109 398.3 356 61.0
CsaV3_6G047590 Cucumis sativus L. HOM05D005912 ORTHO05D007329 8.6e-109 397.9 381 57.7
PSO541G6093 Papaver somniferum HOM05D005912 ORTHO05D007329 8.6e-109 397.9 377 58.1
TPR.G25119 Trifolium pratense HOM05D005912 ORTHO05D007329 1.1e-108 397.5 367 61.3
Lj2g0008610 Lotus japonicus HOM05D005912 ORTHO05D007329 1.9e-108 396.7 353 61.2
Ciclev10025822m.g Citrus clementina HOM05D005912 ORTHO05D007329 2.5e-108 396.4 306 67.6
Thhalv10025477m.g Eutrema salsugineum HOM05D005912 ORTHO05D007329 2.8e-107 392.9 335 59.4
Medtr5g023180 Medicago truncatula HOM05D005912 ORTHO05D007329 2.8e-107 392.9 363 60.1
TAR288G0001 Trochodendron aralioides HOM05D005912 ORTHO05D007329 4.7e-107 392.1 354 61.3
PSO675G2300 Papaver somniferum HOM05D005912 ORTHO05D007329 1.4e-106 390.6 371 58.2
CAN.G890.19 Capsicum annuum HOM05D005912 ORTHO05D007329 3.1e-106 389.4 332 63.9
Ca_24951_v3 Cicer arietinum L. HOM05D005912 ORTHO05D007329 4.0e-106 389.0 364 59.3
CSS0031078 Camellia sinensis var. sinensis HOM05D005912 ORTHO05D007329 6.8e-106 388.3 364 59.1
Rhsim10G0204000 Rhododendron simsii HOM05D005912 ORTHO05D007329 8.9e-106 387.9 383 58.0
Sed0007504 Sechium edule HOM05D005912 ORTHO05D007329 8.9e-106 387.9 341 60.4
PGSC0003DMG400001581 Solanum tuberosum HOM05D005912 ORTHO05D007329 1.5e-105 387.1 332 63.0
THA.LOC104807519 Tarenaya hassleriana HOM05D005912 ORTHO05D007329 1.5e-105 387.1 383 56.1
BolC1t00315H Brassica oleracea HOM05D005912 ORTHO05D007329 2.6e-105 386.3 325 59.7
MBI08_g40329_MAGBIO Magnolia biondii HOM05D005912 ORTHO05D007329 3.4e-105 386.0 350 61.4
Sp7g33520 Schrenkiella parvula HOM05D005912 ORTHO05D007329 3.4e-105 386.0 335 58.8
Manes.01G152000 Manihot esculenta HOM05D005912 ORTHO05D007329 5.8e-105 385.2 354 60.7
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 2.2e-104 383.3 364 59.6
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 6.4e-104 381.7 328 63.1
Sopen02g028060 Solanum pennellii HOM05D005912 ORTHO05D007329 1.4e-103 380.6 370 57.6
C01p03300 Brassica napus HOM05D005912 ORTHO05D007329 3.2e-103 379.4 328 58.2
Sc07g0001240 Simmondsia chinensis HOM05D005912 ORTHO05D007329 3.2e-103 379.4 366 56.8
Solyc02g083270.4 Solanum lycopersicum HOM05D005912 ORTHO05D007329 5.4e-103 378.6 370 57.3
A01p02950 Brassica napus HOM05D005912 ORTHO05D007329 1.6e-102 377.1 328 58.2
BraA01t00278Z Brassica rapa HOM05D005912 ORTHO05D007329 1.6e-102 377.1 328 58.2
Aa31LG6G12710 Aethionema arabicum HOM05D005912 ORTHO05D007329 2.0e-102 376.7 369 55.3
Carub.0007s0449 Capsella rubella HOM05D005912 ORTHO05D007329 2.0e-102 376.7 339 56.3
CARHR244100 Cardamine hirsuta HOM05D005912 ORTHO05D007329 6.0e-102 375.2 360 55.3
Aqoxy6G01899 Aquilegia oxysepala HOM05D005912 ORTHO05D007329 3.0e-101 372.9 356 57.6
Lj2A487G56 Lonicera japonica HOM05D005912 ORTHO05D007329 1.5e-100 370.5 397 54.4
Lj4A227T48 Lonicera japonica HOM05D005912 ORTHO05D007329 1.9e-100 370.2 367 58.0
Ah.11g045130 Amaranthus hybridus HOM05D005912 ORTHO05D007329 4.3e-100 369.0 357 56.9
Lsat_1_v5_gn_2_75281 Lactuca sativa HOM05D005912 ORTHO05D007329 5.6e-100 368.6 381 54.6
HanXRQChr07g0192501 Helianthus annuus HOM05D005912 ORTHO05D007329 7.3e-100 368.2 375 55.5
ECA238G3446 Erigeron canadensis HOM05D005912 ORTHO05D007329 6.2e-99 365.2 300 62.3
HanXRQChr14g0442051 Helianthus annuus HOM05D005912 ORTHO05D007329 8.1e-99 364.8 378 54.2
Lalb_Chr05g0212091 Lupinus albus HOM05D005912 ORTHO05D007329 1.8e-98 363.6 363 55.6
BraA08t34122Z Brassica rapa HOM05D005912 ORTHO05D007329 2.6e-97 359.8 285 62.1
AUR62029896 Chenopodium quinoa HOM05D005912 ORTHO05D007329 4.4e-97 359.0 373 54.2
MSTRG.2738 Avicennia marina HOM05D005912 ORTHO05D007329 7.5e-97 358.2 351 55.8
Migut.L00742 Erythranthe guttata HOM05D005912 ORTHO05D007329 6.4e-96 355.1 392 54.3
ATR0661G434 Amborella trichopoda HOM05D005912 ORTHO05D007329 2.3e-93 346.7 305 60.0
CDE06G1293 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 1.5e-92 344.0 369 51.8
AT4G35760 Arabidopsis thaliana HOM05D005912 ORTHO05D007329 9.5e-92 341.3 323 54.2
EL10Ac5g11470 Beta vulgaris HOM05D005912 ORTHO05D007329 3.6e-91 339.3 374 54.0
Os03g0131500 Oryza sativa ssp. japonica HOM05D005912 ORTHO05D007329 1.8e-90 337.0 358 53.6
AL7G15340 Arabidopsis lyrata HOM05D005912 ORTHO05D007329 5.2e-90 335.5 335 52.2
Zm00001eb002560 Zea mays HOM05D005912 ORTHO05D007329 1.7e-88 330.5 374 52.7
CANSAT25G2212 Cannabis sativa HOM05D005912 ORTHO05D007329 3.5e-86 322.8 237 70.0
SalBow3G0555 Salvia bowleyana HOM05D005912 ORTHO05D007329 4.6e-86 322.4 376 50.0
HPP92_022166 Vanilla planifolia HOM05D005912 ORTHO05D007329 1.1e-84 317.8 289 56.4
AUR62033809 Chenopodium quinoa HOM05D005912 ORTHO05D007329 1.6e-83 313.9 266 59.4
GSVIVG01002335001 Vitis vinifera HOM05D005912 ORTHO05D007329 1.1e-82 311.2 285 60.7
Oeu012550.1 Olea europaea HOM05D005912 ORTHO05D007329 1.4e-82 310.8 296 57.1
SGA_v2.0_scaffold108G30993 Striga asiatica HOM05D005912 ORTHO05D007329 2.0e-81 307.0 349 51.0
Cpa.g.sc6.326 Carica papaya HOM05D005912 ORTHO05D007329 4.4e-81 305.8 376 49.5
MELO3C007950.2 Cucumis melo HOM05D005912 ORTHO05D007329 1.4e-79 300.8 377 48.0
CDE03G0408 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 4.6e-70 269.2 367 45.5
Mapoly0023s0120 Marchantia polymorpha HOM05D005912 ORTHO05D007329 3.0e-69 266.5 325 48.3
SMO119G0150 Selaginella moellendorffii HOM05D005912 ORTHO05D007329 1.9e-68 263.8 293 47.4
Pp3c3_30980 Physcomitrium patens HOM05D005912 ORTHO05D007329 1.5e-65 254.2 326 44.2
unitig_88.g27769 Utricularia gibba HOM05D005912 ORTHO05D007329 4.5e-65 252.7 236 56.4
CBR_g79494 Chara braunii HOM05D005912 ORTHO05D007329 9.9e-65 251.5 311 42.8
Glyma.01G161400 Glycine max HOM05D005912 ORTHO05D007329 1.2e-62 244.6 217 61.8
Migut.H02191 Erythranthe guttata HOM05D005912 ORTHO05D007329 1.0e-56 224.9 369 40.9
VMungo1215G0927 Vigna mungo HOM05D005912 ORTHO05D007329 8.4e-56 221.9 222 58.1
C03p80880 Brassica napus HOM05D000088 ORTHO05D000933 1.4e-55 221.1 343 41.4
A08p21710 Brassica napus HOM05D000088 ORTHO05D000933 2.5e-55 220.3 341 42.5
BolC3t20343H Brassica oleracea HOM05D000088 ORTHO05D000933 5.5e-55 219.2 337 41.8
BcaC01g00519 Brassica carinata HOM05D005912 ORTHO05D007329 1.9e-52 210.7 288 45.1
Peaxi162Scf00300g00017 Petunia axillaris HOM05D005912 ORTHO05D007329 9.7e-52 208.4 210 57.1
BcaNung05729 Brassica carinata HOM05D005912 ORTHO05D007329 7.7e-49 198.7 210 51.4
DCAR_011589 Daucus carota HOM05D005912 ORTHO05D007329 1.7e-48 197.6 263 47.5
MCO13G425 Micromonas commoda HOM05D005912 ORTHO05D007329 1.2e-46 191.4 332 38.9
SGA_v2.0_scaffold132G34545 Striga asiatica HOM05D005912 ORTHO05D007329 1.2e-46 191.4 174 61.5
Cre12.g493150 Chlamydomonas reinhardtii HOM05D005912 ORTHO05D007329 1.4e-45 188.0 309 39.2
Actinidia22932 Actinidia chinensis HOM05D005912 ORTHO05D007329 3.3e-44 183.3 118 68.6
SGA_v2.0_scaffold132G34543 Striga asiatica HOM05D005912 ORTHO05D007329 1.2e-41 174.9 117 68.4
PRCOL_00003732 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 5.0e-40 169.5 287 39.0
MSTRG.15589 Avicennia marina HOM05D005912 ORTHO05D007329 2.5e-39 167.2 111 71.2
Pp3c1_24560 Physcomitrium patens HOM05D005912 ORTHO05D007329 1.1e-36 158.3 143 55.2
arahy.Tifrunner.gnm1.ann1.SP2XL4 Arachis hypogaea HOM05D005912 ORTHO05D007329 1.3e-35 154.8 172 55.8
SEGI_31957 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 4.5e-33 146.4 167 48.5
FAN28G1872 Fragaria x ananassa HOM05D005912 ORTHO05D007329 3.8e-32 143.3 75 90.7
Lj2A933T26 Lonicera japonica HOM05D005912 ORTHO05D007329 5.5e-31 139.4 126 61.9
MD15G1236200 Malus domestica HOM05D005912 ORTHO05D007329 6.3e-27 125.9 73 78.1
AagrBONN_evm.TU.Sc2ySwM_340.180 Anthoceros agrestis HOM05D005912 ORTHO05D007329 2.4e-26 124.0 258 35.7
PRCOL_00002964 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 2.5e-23 114.0 113 52.2
Peaxi162Scf56132g00003 Petunia axillaris HOM05D005912 ORTHO05D007329 7.2e-23 112.5 70 71.4
Gohir.D03G004450 Gossypium hirsutum HOM05D005912 ORTHO05D007329 6.1e-22 109.4 67 73.1
AagrBONN_evm.TU.Sc2ySwM_228.1421 Anthoceros agrestis HOM05D005912 ORTHO05D007329 8.0e-22 109.0 198 34.3
SEGI_22324 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 1.3e-19 101.7 64 71.9
RcHm_v2.0_Chr4g0418411 Rosa chinensis HOM05D005912 ORTHO05D007329 9.1e-18 95.5 68 77.9
RcHm_v2.0_Chr7g0224811 Rosa chinensis HOM05D005912 ORTHO05D007329 3.5e-17 93.6 68 77.9
Hma1.2p1_4017F.1_g338140 Hydrangea macrophylla HOM05D005912 ORTHO05D007329 1.0e-16 92.0 56 75.0
Lj2P933T24 Lonicera japonica HOM05D005912 ORTHO05D007329 1.3e-16 91.7 53 73.6
MCO11G735 Micromonas commoda HOM05D005912 ORTHO05D007329 1.2e-12 78.6 127 32.3
Lj2A1074G31 Lonicera japonica HOM05D005912 ORTHO05D007329 3.7e-11 73.6 71 56.3
unitig_88.g27770 Utricularia gibba HOM05D005912 ORTHO05D007329 8.3e-11 72.4 106 41.5
MD15G1236500 Malus domestica HOM05D005912 ORTHO05D249235 2.5e-07 60.8 47 70.2


User provided reference genes

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