Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0098161 Rosa chinensis HOM05D007035 ORTHO05D008774 2.6e-97 358.6 169 100.0
FAN28G2890 Fragaria x ananassa HOM05D007035 ORTHO05D008774 1.1e-90 336.7 165 95.2
FvH4_1g10900 Fragaria vesca HOM05D007035 ORTHO05D008774 3.1e-90 335.1 165 95.2
FAN19G1923 Fragaria x ananassa HOM05D007035 ORTHO05D008774 1.2e-89 333.2 165 94.5
FAN26G0170 Fragaria x ananassa HOM05D007035 ORTHO05D008774 1.5e-89 332.8 165 94.5
FAN23G2784 Fragaria x ananassa HOM05D007035 ORTHO05D008774 5.8e-89 330.9 165 93.9
Prupe.7G176600 Prunus persica HOM05D007035 ORTHO05D008774 1.5e-84 316.2 165 89.1
MD02G1242600 Malus domestica HOM05D007035 ORTHO05D008774 3.4e-81 305.1 165 84.8
QL06p052348 Quercus lobata HOM05D007035 ORTHO05D008774 1.2e-73 280.0 165 77.6
Ciclev10026505m.g Citrus clementina HOM05D007035 ORTHO05D008774 4.5e-73 278.1 165 76.4
QL06p052340 Quercus lobata HOM05D007035 ORTHO05D008774 5.9e-73 277.7 166 76.5
CiPaw.07G005600 Carya illinoinensis HOM05D007035 ORTHO05D008774 1.3e-72 276.6 165 75.8
CSS0018213 Camellia sinensis var. sinensis HOM05D007035 ORTHO05D008774 1.1e-71 273.5 165 74.5
Cfa015701 Carpinus fangiana HOM05D007035 ORTHO05D008774 1.1e-71 273.5 165 73.9
Atru.chr3.931 Acer truncatum HOM05D007035 ORTHO05D008774 1.9e-71 272.7 166 74.1
Actinidia17600 Actinidia chinensis HOM05D007035 ORTHO05D008774 7.2e-71 270.8 165 73.9
Thecc.01G009700 Theobroma cacao HOM05D007035 ORTHO05D008774 7.2e-71 270.8 167 73.1
Manes.02G111400 Manihot esculenta HOM05D007035 ORTHO05D008774 1.6e-70 269.6 165 72.1
Hma1.2p1_0315F.1_g122740 Hydrangea macrophylla HOM05D007035 ORTHO05D008774 4.7e-70 268.1 165 72.7
ClCG01G020680 Citrullus lanatus HOM05D007035 ORTHO05D008774 7.9e-70 267.3 165 72.7
Ca_03644_v3 Cicer arietinum L. HOM05D007035 ORTHO05D008774 1.4e-69 266.5 165 70.9
Lalb_Chr05g0229721 Lupinus albus HOM05D007035 ORTHO05D008774 1.8e-69 266.2 165 71.5
MELO3C007951.2 Cucumis melo HOM05D007035 ORTHO05D008774 3.0e-69 265.4 165 71.5
Gorai.003G004700 Gossypium raimondii HOM05D007035 ORTHO05D008774 3.0e-69 265.4 163 71.8
Gohir.A02G175400 Gossypium hirsutum HOM05D007035 ORTHO05D008774 3.9e-69 265.0 163 71.8
Lj4g0012539 Lotus japonicus HOM05D007035 ORTHO05D008774 6.7e-69 264.2 161 73.9
Rhsim08G0078500 Rhododendron simsii HOM05D007035 ORTHO05D008774 8.8e-69 263.8 161 74.5
Gohir.D03G004400 Gossypium hirsutum HOM05D007035 ORTHO05D008774 1.5e-68 263.1 163 71.2
TPR.G32013 Trifolium pratense HOM05D007035 ORTHO05D008774 2.0e-68 262.7 165 69.1
Glyma.16G120900 Glycine max HOM05D007035 ORTHO05D008774 2.6e-68 262.3 161 72.7
vmacro18445 Vaccinium macrocarpon HOM05D007035 ORTHO05D008774 2.6e-68 262.3 165 71.5
Potri.005G105500 Populus trichocarpa HOM05D007035 ORTHO05D008774 3.3e-68 261.9 161 75.2
Medtr8g074720 Medicago truncatula HOM05D007035 ORTHO05D008774 4.4e-68 261.5 165 70.9
Phvul.003G267600 Phaseolus vulgaris HOM05D007035 ORTHO05D008774 5.7e-68 261.2 161 72.0
Oeu008100.1 Olea europaea HOM05D007035 ORTHO05D008774 1.3e-67 260.0 165 69.1
PGR102G2581 Punica granatum HOM05D007035 ORTHO05D008774 1.7e-67 259.6 161 69.6
Psat4g103040 Pisum sativum HOM05D007035 ORTHO05D008774 2.2e-67 259.2 165 68.5
CsaV3_6G047600 Cucumis sativus L. HOM05D007035 ORTHO05D008774 6.3e-67 257.7 166 70.5
Sed0013381 Sechium edule HOM05D007035 ORTHO05D008774 6.3e-67 257.7 165 69.7
Lsat_1_v5_gn_2_75101 Lactuca sativa HOM05D007035 ORTHO05D008774 8.2e-67 257.3 165 68.5
Nitab4.5_0001696g0080 Nicotiana tabacum HOM05D007035 ORTHO05D008774 4.1e-66 255.0 165 69.1
HanXRQChr07g0192541 Helianthus annuus HOM05D007035 ORTHO05D008774 1.2e-65 253.4 165 66.7
CANSAT25G1910 Cannabis sativa HOM05D007035 ORTHO05D008774 2.0e-65 252.7 167 69.5
TWI59G1021 Tripterygium wilfordii HOM05D007035 ORTHO05D008774 2.6e-65 252.3 165 68.5
Eucgr.J02513 Eucalyptus grandis HOM05D007035 ORTHO05D008774 3.5e-65 251.9 169 69.2
TAR628G1604 Trochodendron aralioides HOM05D007035 ORTHO05D008774 4.5e-65 251.5 161 68.9
CAN.G890.13 Capsicum annuum HOM05D007035 ORTHO05D008774 7.7e-65 250.8 165 67.9
Hund08627 Selenicereus undatus HOM05D007035 ORTHO05D008774 2.2e-64 249.2 165 66.7
PGSC0003DMG400001578 Solanum tuberosum HOM05D007035 ORTHO05D008774 2.2e-64 249.2 165 69.1
Cc07_g12370 Coffea canephora HOM05D007035 ORTHO05D008774 8.5e-64 247.3 165 67.3
Ah.10g032510 Amaranthus hybridus HOM05D007035 ORTHO05D008774 1.1e-63 246.9 165 63.6
DCAR_027629 Daucus carota HOM05D007035 ORTHO05D008774 1.1e-63 246.9 165 65.5
Dinv40155 Davidia involucrata HOM05D002155 ORTHO05D002215 1.1e-63 246.9 145 75.2
GSVIVG01006258001 Vitis vinifera HOM05D007035 ORTHO05D008774 1.9e-63 246.1 161 65.8
EL10Ac9g22991 Beta vulgaris HOM05D007035 ORTHO05D008774 1.2e-62 243.4 165 64.8
Solyc02g083180.4 Solanum lycopersicum HOM05D007035 ORTHO05D008774 1.6e-62 243.0 165 67.3
Sopen02g027940 Solanum pennellii HOM05D007035 ORTHO05D008774 1.6e-62 243.0 165 67.3
arahy.Tifrunner.gnm1.ann1.JN68AD Arachis hypogaea HOM05D007035 ORTHO05D008774 2.7e-62 242.3 162 66.7
arahy.Tifrunner.gnm1.ann1.Y2NACG Arachis hypogaea HOM05D007035 ORTHO05D008774 2.7e-62 242.3 162 66.7
Nn6g31845 Nelumbo nucifera HOM05D007035 ORTHO05D008774 4.7e-62 241.5 165 64.8
THA.LOC104807437 Tarenaya hassleriana HOM05D007035 ORTHO05D008774 4.7e-62 241.5 165 64.8
Migut.L00741 Erythranthe guttata HOM05D007035 ORTHO05D008774 8.8e-61 237.3 165 61.2
Sc20g0005390 Simmondsia chinensis HOM05D007035 ORTHO05D008774 1.1e-60 236.9 147 70.1
MSTRG.15590 Avicennia marina HOM05D007035 ORTHO05D008774 2.6e-60 235.7 161 64.6
C03p58600 Brassica napus HOM05D007035 ORTHO05D008774 3.3e-60 235.3 165 61.8
Lj4A228G16 Lonicera japonica HOM05D007035 ORTHO05D008774 4.4e-60 235.0 145 73.1
BraA06t26305Z Brassica rapa HOM05D007035 ORTHO05D008774 9.7e-60 233.8 165 61.8
A06p33710 Brassica napus HOM05D007035 ORTHO05D008774 1.3e-59 233.4 165 61.2
BcaC01g02899 Brassica carinata HOM05D007035 ORTHO05D008774 1.7e-59 233.0 165 61.2
BolC3t18121H Brassica oleracea HOM05D007035 ORTHO05D008774 1.7e-59 233.0 165 61.2
ECA238G0027 Erigeron canadensis HOM05D007035 ORTHO05D008774 1.7e-59 233.0 166 61.4
AT2G17695 Arabidopsis thaliana HOM05D007035 ORTHO05D008774 2.2e-59 232.6 165 60.0
Thhalv10022849m.g Eutrema salsugineum HOM05D007035 ORTHO05D008774 4.8e-59 231.5 165 60.6
AL3G50680 Arabidopsis lyrata HOM05D007035 ORTHO05D008774 6.3e-59 231.1 165 59.4
SalBow5G2770 Salvia bowleyana HOM05D007035 ORTHO05D008774 8.2e-59 230.7 166 60.2
SGA_v2.0_scaffold229G43297 Striga asiatica HOM05D001343 ORTHO05D002008 8.2e-59 230.7 161 62.1
Sp3g31080 Schrenkiella parvula HOM05D007035 ORTHO05D008774 1.1e-58 230.3 165 60.0
Carub.0003s3179 Capsella rubella HOM05D007035 ORTHO05D008774 1.4e-58 229.9 165 59.4
BcaB08g34751 Brassica carinata HOM05D007035 ORTHO05D008774 1.8e-58 229.6 165 60.0
VMungo0251G2208 Vigna mungo HOM05D007035 ORTHO05D008774 1.8e-58 229.6 141 74.5
Cpa.g.sc6.337 Carica papaya HOM05D007035 ORTHO05D008774 2.4e-58 229.2 146 69.9
MBI05_g35104_MAGBIO Magnolia biondii HOM05D007035 ORTHO05D008774 7.7e-57 224.2 172 60.5
PSO541G4772 Papaver somniferum HOM05D007035 ORTHO05D008774 1.7e-56 223.0 168 62.5
PSO675G7652 Papaver somniferum HOM05D007035 ORTHO05D008774 2.2e-56 222.6 168 61.9
unitig_88.g27771 Utricularia gibba HOM05D007035 ORTHO05D008774 3.8e-56 221.9 167 59.9
COL.COLO4_22513 Corchorus olitorius HOM05D007035 ORTHO05D008774 7.2e-55 217.6 161 62.7
CDE09G0622 Ceratophyllum demersum HOM05D007035 ORTHO05D008774 1.5e-52 209.9 165 58.8
AL3G27500 Arabidopsis lyrata HOM05D007035 ORTHO05D008774 5.7e-52 208.0 144 61.8
Peaxi162Scf00300g00123 Petunia axillaris HOM05D007035 ORTHO05D008774 9.7e-52 207.2 135 68.1
Prupe.1G268600 Prunus persica HOM05D007035 ORTHO05D008774 2.8e-51 205.7 106 87.7
Duzib147G1308 Durio zibethinus HOM05D007035 ORTHO05D008774 3.7e-51 205.3 168 58.3
Prupe.6G001100 Prunus persica HOM05D007035 ORTHO05D008774 1.1e-50 203.8 106 86.8
Aa31LG8G14960 Aethionema arabicum HOM05D000088 ORTHO05D000933 1.8e-50 203.0 143 63.6
Aqoxy6G01870 Aquilegia oxysepala HOM05D007035 ORTHO05D008774 1.6e-49 199.9 148 59.5
AUR62032933 Chenopodium quinoa HOM05D007035 ORTHO05D008774 1.3e-48 196.8 124 70.2
HPP92_014997 Vanilla planifolia HOM05D007035 ORTHO05D008774 1.2e-46 190.3 168 53.6
ATR0661G057 Amborella trichopoda HOM05D007035 ORTHO05D008774 7.5e-44 181.0 148 56.1
Os03g0107600 Oryza sativa ssp. japonica HOM05D007035 ORTHO05D008774 3.7e-43 178.7 171 50.3
Os04g0119300 Oryza sativa ssp. japonica HOM05D007035 ORTHO05D008774 3.7e-43 178.7 171 50.3
Pp3c1_37080 Physcomitrium patens HOM05D007035 ORTHO05D008774 7.0e-42 174.5 177 45.2
Zm00001eb241510 Zea mays HOM05D007035 ORTHO05D008774 1.6e-41 173.3 173 49.1
Eucgr.J01132 Eucalyptus grandis HOM05D007035 ORTHO05D008774 7.5e-36 154.5 145 52.4
RcHm_v2.0_Chr5g0036401 Rosa chinensis HOM05D007035 ORTHO05D008774 1.8e-34 149.8 105 69.5
SEGI_40855 Sequoiadendron giganteum HOM05D007035 ORTHO05D008774 2.0e-33 146.4 168 42.9
Mapoly0027s0184 Marchantia polymorpha HOM05D007035 ORTHO05D008774 1.5e-31 140.2 166 42.2
AagrBONN_evm.TU.Sc2ySwM_117.3401 Anthoceros agrestis HOM05D007035 ORTHO05D008774 1.9e-31 139.8 157 43.9
AUR62017739 Chenopodium quinoa HOM05D007035 ORTHO05D008774 4.3e-31 138.7 83 71.1
CARHR107960 Cardamine hirsuta HOM05D007035 ORTHO05D008774 1.2e-25 120.6 83 60.2
SMO364G0252 Selaginella moellendorffii HOM05D007035 ORTHO05D008774 3.5e-25 119.0 113 48.7
RcHm_v2.0_Chr5g0036471 Rosa chinensis HOM05D007035 ORTHO05D008774 3.7e-19 99.0 54 77.8
Cre17.g720550 Chlamydomonas reinhardtii HOM05D007035 ORTHO05D008774 2.7e-17 92.8 164 34.1
CBR_g48433 Chara braunii HOM05D007035 ORTHO05D008774 3.0e-16 89.4 99 42.4
PRCOL_00002518 Prasinoderma coloniale HOM05D007035 ORTHO05D008774 5.1e-16 88.6 117 38.5
MCO10G322 Micromonas commoda HOM05D007035 ORTHO05D008774 2.2e-11 73.2 150 30.7


User provided reference genes

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