Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0097571 Rosa chinensis HOM05D001343 ORTHO05D007223 3.6e-59 231.5 127 100.0
RcHm_v2.0_Chr2g0097451 Rosa chinensis HOM05D001343 ORTHO05D007223 3.4e-57 224.9 123 100.0
FAN19G1061 Fragaria x ananassa HOM05D001343 ORTHO05D007223 1.9e-52 209.1 123 93.5
FvH4_1g10521 Fragaria vesca HOM05D001343 ORTHO05D007223 1.6e-51 206.1 123 92.7
FAN23G1852 Fragaria x ananassa HOM05D001343 ORTHO05D007223 8.1e-51 203.8 123 91.9
FAN28G2189 Fragaria x ananassa HOM05D001343 ORTHO05D007223 1.4e-50 203.0 123 91.9
MD02G1119300 Malus domestica HOM05D001343 ORTHO05D007223 1.3e-48 196.4 123 87.8
Prupe.7G179600 Prunus persica HOM05D001343 ORTHO05D007223 2.2e-48 195.7 123 86.2
MD15G1233300 Malus domestica HOM05D001343 ORTHO05D007223 6.4e-48 194.1 123 87.0
QL06p053829 Quercus lobata HOM05D001343 ORTHO05D007223 2.7e-46 188.7 123 84.6
Haze_03675 Corylus avellana HOM05D001343 ORTHO05D007223 3.5e-46 188.3 123 83.7
QL06p052741 Quercus lobata HOM05D001343 ORTHO05D007223 2.3e-45 185.7 123 83.7
Potri.005G099800 Populus trichocarpa HOM05D001343 ORTHO05D007223 5.1e-45 184.5 123 81.3
CiPaw.07G004100 Carya illinoinensis HOM05D001343 ORTHO05D007223 6.6e-45 184.1 123 82.1
Dinv40173 Davidia involucrata HOM05D001343 ORTHO05D007223 2.5e-44 182.2 123 82.9
Sabra05G0082500 Salix brachista HOM05D001343 ORTHO05D007223 3.3e-44 181.8 123 80.5
TPR.G25095 Trifolium pratense HOM05D001343 ORTHO05D007223 2.1e-43 179.1 123 79.7
Phvul.002G114800 Phaseolus vulgaris HOM05D001343 ORTHO05D007223 8.1e-43 177.2 123 79.7
VMungo1215G1031 Vigna mungo HOM05D001343 ORTHO05D007223 1.1e-42 176.8 122 80.3
Medtr5g023770 Medicago truncatula HOM05D001343 ORTHO05D007223 1.4e-42 176.4 123 78.9
Dinv08526 Davidia involucrata HOM05D001343 ORTHO05D007223 9.0e-42 173.7 123 78.9
arahy.Tifrunner.gnm1.ann1.AU9Y8G Arachis hypogaea HOM05D001343 ORTHO05D007223 1.2e-41 173.3 125 78.4
arahy.Tifrunner.gnm1.ann1.SLQH96 Arachis hypogaea HOM05D001343 ORTHO05D007223 1.2e-41 173.3 125 78.4
Hma1.2p1_0300F.1_g118160 Hydrangea macrophylla HOM05D001343 ORTHO05D007223 1.2e-41 173.3 123 78.9
Lj2g0004784 Lotus japonicus HOM05D001343 ORTHO05D007223 4.5e-41 171.4 123 77.2
Lalb_Chr05g0211921 Lupinus albus HOM05D001343 ORTHO05D007223 4.5e-41 171.4 122 79.5
Actinidia17384 Actinidia chinensis HOM05D001343 ORTHO05D007223 1.3e-40 169.9 123 78.0
Psat2g150480 Pisum sativum HOM05D001343 ORTHO05D007223 6.4e-40 167.5 123 75.6
Carub.0008s2848 Capsella rubella HOM05D001343 ORTHO05D007223 8.4e-40 167.2 123 77.2
Ciclev10024922m.g Citrus clementina HOM05D001343 ORTHO05D007223 8.4e-40 167.2 126 77.8
Atru.chr3.956 Acer truncatum HOM05D001343 ORTHO05D007223 1.1e-39 166.8 123 77.2
CANSAT25G1453 Cannabis sativa HOM05D001343 ORTHO05D007223 1.1e-39 166.8 123 78.9
Duzib187G0329 Durio zibethinus HOM05D001343 ORTHO05D007223 1.1e-39 166.8 126 77.8
SalBow5G5069 Salvia bowleyana HOM05D001343 ORTHO05D007223 1.1e-39 166.8 123 74.8
BcaB04g20130 Brassica carinata HOM05D001343 ORTHO05D002008 1.9e-39 166.0 123 77.2
TWI09G1271 Tripterygium wilfordii HOM05D001343 ORTHO05D007223 1.9e-39 166.0 125 75.2
ClCG10G000340 Citrullus lanatus HOM05D001343 ORTHO05D007223 2.4e-39 165.6 123 78.9
CANSAT25G0854 Cannabis sativa HOM05D001343 ORTHO05D007223 3.2e-39 165.2 123 78.0
Manes.02G112700 Manihot esculenta HOM05D001343 ORTHO05D007223 3.2e-39 165.2 126 76.2
MSTRG.15594 Avicennia marina HOM05D001343 ORTHO05D007223 4.2e-39 164.9 123 74.8
CARHR281730 Cardamine hirsuta HOM05D001343 ORTHO05D007223 4.2e-39 164.9 123 76.4
vmacro20524 Vaccinium macrocarpon HOM05D001343 ORTHO05D007223 5.4e-39 164.5 123 73.2
Sed0023593 Sechium edule HOM05D001343 ORTHO05D007223 7.1e-39 164.1 123 78.9
BcaC04g23105 Brassica carinata HOM05D001343 ORTHO05D002008 9.3e-39 163.7 123 76.4
A09p10220 Brassica napus HOM05D001343 ORTHO05D002008 9.3e-39 163.7 123 76.4
C09p12110 Brassica napus HOM05D001343 ORTHO05D002008 9.3e-39 163.7 123 76.4
CsaV3_3G000380 Cucumis sativus L. HOM05D001343 ORTHO05D007223 2.7e-38 162.2 123 78.0
PGR083G0487 Punica granatum HOM05D001343 ORTHO05D007223 3.5e-38 161.8 123 77.2
SGA_v2.0_scaffold12G05990 Striga asiatica HOM05D001343 ORTHO05D007223 4.6e-38 161.4 123 74.8
Glyma.11G084200 Glycine max HOM05D001343 ORTHO05D007223 3.0e-37 158.7 123 74.0
Solyc02g082840.3 Solanum lycopersicum HOM05D001343 ORTHO05D007223 3.9e-37 158.3 123 74.0
Sopen02g027640 Solanum pennellii HOM05D001343 ORTHO05D007223 3.9e-37 158.3 123 74.0
BolC9t54101H Brassica oleracea HOM05D001343 ORTHO05D002008 5.1e-37 157.9 130 72.3
BraA09t36667Z Brassica rapa HOM05D001343 ORTHO05D002008 5.1e-37 157.9 130 72.3
Zm00001eb104860 Zea mays HOM05D001343 ORTHO05D007223 2.5e-36 155.6 123 70.7
Sp2g30660 Schrenkiella parvula HOM05D001343 ORTHO05D007223 9.6e-36 153.7 123 73.2
Duzib147G0638 Durio zibethinus HOM05D001343 ORTHO05D007223 1.6e-35 152.9 123 74.0
HanXRQChr14g0442391 Helianthus annuus HOM05D001343 ORTHO05D007223 1.6e-35 152.9 123 72.4
Os07g0472500 Oryza sativa ssp. japonica HOM05D001343 ORTHO05D007223 1.6e-35 152.9 123 70.7
THA.LOC104826465 Tarenaya hassleriana HOM05D001343 ORTHO05D007223 1.6e-35 152.9 122 73.0
Gohir.D10G089000 Gossypium hirsutum HOM05D001343 ORTHO05D007223 2.1e-35 152.5 123 71.5
Gorai.011G097900 Gossypium raimondii HOM05D001343 ORTHO05D007223 2.1e-35 152.5 123 71.5
CSS0043948 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D007223 2.8e-35 152.1 123 71.5
PSO170G3735 Papaver somniferum HOM05D001343 ORTHO05D007223 2.8e-35 152.1 123 73.2
PSO210G1702 Papaver somniferum HOM05D001343 ORTHO05D007223 2.8e-35 152.1 123 73.2
Thecc.01G007100 Theobroma cacao HOM05D001343 ORTHO05D007223 2.8e-35 152.1 123 72.4
Gohir.A10G099100 Gossypium hirsutum HOM05D001343 ORTHO05D007223 8.1e-35 150.6 123 70.7
ATR0661G538 Amborella trichopoda HOM05D001343 ORTHO05D007223 1.1e-34 150.2 124 71.0
GSVIVG01003839001 Vitis vinifera HOM05D001343 ORTHO05D007223 2.4e-34 149.1 123 69.9
COL.COLO4_22537 Corchorus olitorius HOM05D001343 ORTHO05D007223 4.0e-34 148.3 123 70.7
Hund03615 Selenicereus undatus HOM05D001343 ORTHO05D007223 1.2e-33 146.7 123 69.9
Migut.L00734 Erythranthe guttata HOM05D001343 ORTHO05D007223 2.6e-33 145.6 123 68.3
Aqoxy5G01035 Aquilegia oxysepala HOM05D001343 ORTHO05D007223 5.8e-33 144.4 123 69.1
CAN.G890.76 Capsicum annuum HOM05D001343 ORTHO05D007223 5.8e-33 144.4 123 69.1
TAR381G1734 Trochodendron aralioides HOM05D001343 ORTHO05D007223 7.6e-33 144.1 123 68.3
AL8G45590 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 1.7e-32 142.9 130 67.7
Lj4A232G45 Lonicera japonica HOM05D001343 ORTHO05D007223 4.9e-32 141.4 123 69.1
AT5G66030 Arabidopsis thaliana HOM05D001343 ORTHO05D007223 6.4e-32 141.0 130 66.9
CDE06G1375 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 2.4e-31 139.0 123 66.7
EL10Ac6g15468 Beta vulgaris HOM05D001343 ORTHO05D007223 4.2e-31 138.3 123 69.1
Thhalv10003686m.g Eutrema salsugineum HOM05D001343 ORTHO05D007223 9.3e-31 137.1 123 67.5
Ca_24963_v3 Cicer arietinum L. HOM05D001343 ORTHO05D007223 2.1e-30 136.0 149 61.7
CDE07G1064 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 3.5e-30 135.2 123 65.0
Manes.01G153700 Manihot esculenta HOM05D001343 ORTHO05D007223 7.9e-30 134.0 123 65.9
Cc07_g11650 Coffea canephora HOM05D001343 ORTHO05D007223 1.8e-29 132.9 123 66.7
Cpa.g.sc55.186 Carica papaya HOM05D001343 ORTHO05D007223 1.9e-28 129.4 98 75.5
MELO3C013733.2 Cucumis melo HOM05D001343 ORTHO05D007223 2.1e-27 125.9 83 86.7
SEGI_12448 Sequoiadendron giganteum HOM05D001343 ORTHO05D007223 2.1e-27 125.9 123 61.0
Nn5g30956 Nelumbo nucifera HOM05D001343 ORTHO05D007223 3.7e-27 125.2 123 63.4
Eucgr.J02528 Eucalyptus grandis HOM05D001343 ORTHO05D007223 5.3e-26 121.3 128 60.2
ECA238G2213 Erigeron canadensis HOM05D001343 ORTHO05D007223 9.0e-26 120.6 123 61.0
unitig_88.g27773 Utricularia gibba HOM05D001343 ORTHO05D007223 1.2e-25 120.2 121 62.8
HPP92_003502 Vanilla planifolia HOM05D001343 ORTHO05D007223 1.4e-23 113.2 122 58.2
QL06p053793 Quercus lobata HOM05D001343 ORTHO05D007223 1.2e-22 110.2 69 88.4
AUR62003379 Chenopodium quinoa HOM05D001343 ORTHO05D007223 2.1e-22 109.4 123 56.1
Glyma.01G159900 Glycine max HOM05D001343 ORTHO05D007223 2.1e-22 109.4 123 56.9
Migut.L00811 Erythranthe guttata HOM05D001343 ORTHO05D007223 5.1e-21 104.8 66 86.4
Mapoly0179s0009 Marchantia polymorpha HOM05D001343 ORTHO05D007223 5.1e-21 104.8 129 51.9
AagrBONN_evm.TU.Sc2ySwM_344.163 Anthoceros agrestis HOM05D001343 ORTHO05D007223 2.5e-20 102.4 126 54.0
Rhsim10G0198000 Rhododendron simsii HOM05D001343 ORTHO05D007223 7.4e-20 100.9 121 55.4
arahy.Tifrunner.gnm1.ann1.ISY8LN Arachis hypogaea HOM05D001343 ORTHO05D007223 3.7e-19 98.6 125 53.6
Actinidia22910 Actinidia chinensis HOM05D001343 ORTHO05D007223 4.8e-19 98.2 87 70.1
arahy.Tifrunner.gnm1.ann1.9PSP05 Arachis hypogaea HOM05D001343 ORTHO05D007223 1.4e-18 96.7 125 52.8
DCAR_011583 Daucus carota HOM05D001343 ORTHO05D007223 1.2e-17 93.6 123 52.8
Lsat_1_v5_gn_2_74420 Lactuca sativa HOM05D001343 ORTHO05D007223 1.2e-17 93.6 124 54.8
Nitab4.5_0000702g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 1.0e-16 90.5 124 50.0
Pp3c23_9770 Physcomitrium patens HOM05D001343 ORTHO05D007223 1.0e-16 90.5 123 51.2
Nitab4.5_0002967g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 4.2e-15 85.1 123 48.0
Sc16g0001690 Simmondsia chinensis HOM05D001343 ORTHO05D007223 2.7e-14 82.4 123 51.2
Pp3c20_18210 Physcomitrium patens HOM05D001343 ORTHO05D007223 3.9e-13 78.6 123 46.3
Peaxi162Scf01446g00025 Petunia axillaris HOM05D001343 ORTHO05D007223 5.7e-12 74.7 130 46.2
CBR_g34809 Chara braunii HOM05D000019 ORTHO05D000002 7.4e-12 74.3 133 42.1
HPP92_003508 Vanilla planifolia HOM05D001343 ORTHO05D007223 1.3e-11 73.6 44 88.6
AUR62029449 Chenopodium quinoa HOM05D001343 ORTHO05D007223 2.2e-11 72.8 123 45.5
arahy.Tifrunner.gnm1.ann1.6P6C0I Arachis hypogaea HOM05D001343 ORTHO05D007223 3.7e-11 72.0 66 69.7
Ah.03g148390 Amaranthus hybridus HOM05D001343 ORTHO05D007223 4.8e-11 71.6 123 45.5
QL06p052765 Quercus lobata HOM05D000009 ORTHO05D000008 5.5e-07 58.2 39 69.2
arahy.Tifrunner.gnm1.ann1.QS1PDB Arachis hypogaea HOM05D001343 ORTHO05D007223 4.7e-06 55.1 39 74.4


User provided reference genes

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