Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0097451 Rosa chinensis HOM05D001343 ORTHO05D007223 1.4e-16 88.6 47 100.0
RcHm_v2.0_Chr2g0097561 Rosa chinensis HOM05D001343 ORTHO05D007223 1.4e-16 88.6 47 100.0
FvH4_1g10521 Fragaria vesca HOM05D001343 ORTHO05D007223 8.5e-14 79.3 47 93.6
FAN19G1061 Fragaria x ananassa HOM05D001343 ORTHO05D007223 8.5e-14 79.3 47 93.6
FAN23G1852 Fragaria x ananassa HOM05D001343 ORTHO05D007223 8.5e-14 79.3 47 93.6
FAN28G2189 Fragaria x ananassa HOM05D001343 ORTHO05D007223 9.4e-13 75.9 47 89.4
Prupe.7G179600 Prunus persica HOM05D001343 ORTHO05D007223 1.2e-12 75.5 47 89.4
Sed0023593 Sechium edule HOM05D001343 ORTHO05D007223 1.0e-11 72.4 47 83.0
CiPaw.07G004100 Carya illinoinensis HOM05D001343 ORTHO05D007223 3.0e-11 70.9 47 83.0
CsaV3_3G000380 Cucumis sativus L. HOM05D001343 ORTHO05D007223 3.0e-11 70.9 47 80.9
Dinv08526 Davidia involucrata HOM05D001343 ORTHO05D007223 4.0e-11 70.5 47 83.0
Aqoxy5G01035 Aquilegia oxysepala HOM05D001343 ORTHO05D007223 5.2e-11 70.1 47 83.0
CSS0043948 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D007223 8.8e-11 69.3 47 80.9
MD02G1119300 Malus domestica HOM05D001343 ORTHO05D007223 8.8e-11 69.3 47 78.7
Phvul.002G114800 Phaseolus vulgaris HOM05D001343 ORTHO05D007223 1.2e-10 68.9 47 80.9
Dinv40173 Davidia involucrata HOM05D001343 ORTHO05D007223 2.6e-10 67.8 47 80.9
Duzib147G0638 Durio zibethinus HOM05D001343 ORTHO05D007223 2.6e-10 67.8 47 78.7
QL06p052741 Quercus lobata HOM05D001343 ORTHO05D007223 2.6e-10 67.8 46 80.4
QL06p053829 Quercus lobata HOM05D001343 ORTHO05D007223 2.6e-10 67.8 46 80.4
Thecc.01G007100 Theobroma cacao HOM05D001343 ORTHO05D007223 2.6e-10 67.8 47 78.7
Ca_24963_v3 Cicer arietinum L. HOM05D001343 ORTHO05D007223 3.4e-10 67.4 47 78.7
Migut.L00734 Erythranthe guttata HOM05D001343 ORTHO05D007223 3.4e-10 67.4 47 76.6
Migut.L00811 Erythranthe guttata HOM05D001343 ORTHO05D007223 3.4e-10 67.4 47 76.6
Lalb_Chr05g0211921 Lupinus albus HOM05D001343 ORTHO05D007223 3.4e-10 67.4 45 80.0
Gohir.A10G099100 Gossypium hirsutum HOM05D001343 ORTHO05D007223 4.4e-10 67.0 47 74.5
Gohir.D10G089000 Gossypium hirsutum HOM05D001343 ORTHO05D007223 4.4e-10 67.0 47 74.5
Gorai.011G097900 Gossypium raimondii HOM05D001343 ORTHO05D007223 4.4e-10 67.0 47 74.5
Manes.01G153700 Manihot esculenta HOM05D001343 ORTHO05D007223 4.4e-10 67.0 47 78.7
TAR381G1734 Trochodendron aralioides HOM05D001343 ORTHO05D007223 4.4e-10 67.0 47 78.7
Atru.chr3.956 Acer truncatum HOM05D001343 ORTHO05D007223 5.7e-10 66.6 47 76.6
Atru.chr3.968 Acer truncatum HOM05D001343 ORTHO05D007223 5.7e-10 66.6 47 76.6
TWI09G1271 Tripterygium wilfordii HOM05D001343 ORTHO05D007223 5.7e-10 66.6 47 78.7
CANSAT25G0854 Cannabis sativa HOM05D001343 ORTHO05D007223 7.5e-10 66.2 47 72.3
Haze_03675 Corylus avellana HOM05D001343 ORTHO05D007223 7.5e-10 66.2 47 78.7
MELO3C013733.2 Cucumis melo HOM05D001343 ORTHO05D007223 7.5e-10 66.2 48 79.2
Glyma.11G084200 Glycine max HOM05D001343 ORTHO05D007223 9.8e-10 65.9 47 76.6
Sabra05G0082500 Salix brachista HOM05D001343 ORTHO05D007223 1.3e-09 65.5 47 80.9
Actinidia22910 Actinidia chinensis HOM05D001343 ORTHO05D007223 1.7e-09 65.1 47 74.5
TPR.G25095 Trifolium pratense HOM05D001343 ORTHO05D007223 1.7e-09 65.1 47 76.6
CANSAT25G1453 Cannabis sativa HOM05D001343 ORTHO05D007223 2.2e-09 64.7 47 70.2
Cpa.g.sc55.186 Carica papaya HOM05D001343 ORTHO05D007223 2.2e-09 64.7 47 80.9
GSVIVG01003839001 Vitis vinifera HOM05D001343 ORTHO05D007223 2.8e-09 64.3 47 74.5
SGA_v2.0_scaffold12G05990 Striga asiatica HOM05D001343 ORTHO05D007223 3.7e-09 63.9 47 72.3
VMungo1215G1031 Vigna mungo HOM05D001343 ORTHO05D007223 3.7e-09 63.9 47 72.3
Potri.005G099800 Populus trichocarpa HOM05D001343 ORTHO05D007223 4.8e-09 63.5 47 78.7
Rhsim10G0198000 Rhododendron simsii HOM05D001343 ORTHO05D007223 4.8e-09 63.5 49 73.5
Eucgr.J02528 Eucalyptus grandis HOM05D001343 ORTHO05D007223 6.3e-09 63.2 47 72.3
Medtr5g023770 Medicago truncatula HOM05D001343 ORTHO05D007223 6.3e-09 63.2 48 75.0
SalBow5G5069 Salvia bowleyana HOM05D001343 ORTHO05D007223 8.3e-09 62.8 47 74.5
CAN.G890.76 Capsicum annuum HOM05D001343 ORTHO05D007223 1.4e-08 62.0 47 74.5
Hma1.2p1_0300F.1_g118160 Hydrangea macrophylla HOM05D001343 ORTHO05D007223 1.4e-08 62.0 47 70.2
PSO170G3735 Papaver somniferum HOM05D001343 ORTHO05D007223 1.4e-08 62.0 47 63.8
PSO210G1702 Papaver somniferum HOM05D001343 ORTHO05D007223 1.4e-08 62.0 47 63.8
PGR083G0487 Punica granatum HOM05D001343 ORTHO05D007223 1.8e-08 61.6 47 72.3
Actinidia17384 Actinidia chinensis HOM05D001343 ORTHO05D007223 2.4e-08 61.2 47 72.3
Duzib187G0329 Durio zibethinus HOM05D001343 ORTHO05D007223 2.4e-08 61.2 47 70.2
Nitab4.5_0000702g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 2.4e-08 61.2 47 70.2
Nitab4.5_0002967g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 2.4e-08 61.2 47 70.2
Peaxi162Scf01446g00025 Petunia axillaris HOM05D001343 ORTHO05D007223 2.4e-08 61.2 47 70.2
arahy.Tifrunner.gnm1.ann1.AU9Y8G Arachis hypogaea HOM05D001343 ORTHO05D007223 3.1e-08 60.8 47 70.2
arahy.Tifrunner.gnm1.ann1.SLQH96 Arachis hypogaea HOM05D001343 ORTHO05D007223 3.1e-08 60.8 47 70.2
Cc07_g11650 Coffea canephora HOM05D001343 ORTHO05D007223 3.1e-08 60.8 47 70.2
Sopen02g027640 Solanum pennellii HOM05D001343 ORTHO05D007223 4.1e-08 60.5 47 70.2
ClCG10G000340 Citrullus lanatus HOM05D001343 ORTHO05D007223 5.4e-08 60.1 48 77.1
MD15G1233300 Malus domestica HOM05D001343 ORTHO05D007223 7.0e-08 59.7 47 74.5
Ciclev10024922m.g Citrus clementina HOM05D001343 ORTHO05D007223 9.1e-08 59.3 48 68.8
Lsat_1_v5_gn_2_74420 Lactuca sativa HOM05D001343 ORTHO05D007223 9.1e-08 59.3 47 66.0
Lj2g0004784 Lotus japonicus HOM05D001343 ORTHO05D007223 9.1e-08 59.3 49 71.4
Solyc02g082840.3 Solanum lycopersicum HOM05D001343 ORTHO05D007223 9.1e-08 59.3 47 68.1
DCAR_011583 Daucus carota HOM05D001343 ORTHO05D007223 1.2e-07 58.9 47 68.1
THA.LOC104826465 Tarenaya hassleriana HOM05D001343 ORTHO05D007223 1.2e-07 58.9 47 68.1
QL06p053793 Quercus lobata HOM05D001343 ORTHO05D007223 1.6e-07 58.5 50 70.0
MSTRG.15594 Avicennia marina HOM05D001343 ORTHO05D007223 2.0e-07 58.2 47 68.1
Glyma.01G159900 Glycine max HOM05D001343 ORTHO05D007223 4.5e-07 57.0 47 63.8
COL.COLO4_22537 Corchorus olitorius HOM05D001343 ORTHO05D007223 3.8e-06 53.9 47 59.6
Sc16g0001690 Simmondsia chinensis HOM05D001343 ORTHO05D007223 3.8e-06 53.9 47 66.0
HanXRQChr14g0442391 Helianthus annuus HOM05D001343 ORTHO05D007223 8.5e-06 52.8 47 57.4
Hund03615 Selenicereus undatus HOM05D001343 ORTHO05D007223 8.5e-06 52.8 47 61.7


User provided reference genes

Program Settings