Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0097551 Rosa chinensis HOM05D003687 ORTHO05D004571 6.6e-98 360.5 163 100.0
RcHm_v2.0_Chr2g0097441 Rosa chinensis HOM05D003687 ORTHO05D004571 3.0e-58 228.8 148 77.0
FvH4_1g10530 Fragaria vesca HOM05D003687 ORTHO05D004571 2.4e-55 219.2 148 73.6
FAN19G1222 Fragaria x ananassa HOM05D003687 ORTHO05D004571 5.3e-55 218.0 148 73.0
FAN23G1902 Fragaria x ananassa HOM05D003687 ORTHO05D004571 1.2e-54 216.9 148 73.0
Sabra05G0082600 Salix brachista HOM05D003687 ORTHO05D004571 2.0e-54 216.1 148 70.9
Prupe.7G180700 Prunus persica HOM05D003687 ORTHO05D004571 3.5e-54 215.3 148 71.6
Potri.005G099900 Populus trichocarpa HOM05D003687 ORTHO05D004571 4.5e-54 214.9 148 70.3
FAN28G1596 Fragaria x ananassa HOM05D003687 ORTHO05D004571 5.9e-54 214.5 148 72.3
FAN26G2468 Fragaria x ananassa HOM05D003687 ORTHO05D004571 1.0e-53 213.8 148 72.3
FAN26G0112 Fragaria x ananassa HOM05D003687 ORTHO05D004571 1.3e-53 213.4 147 72.1
Lalb_Chr16g0377261 Lupinus albus HOM05D003687 ORTHO05D004571 1.7e-53 213.0 150 70.7
MD02G1119200 Malus domestica HOM05D003687 ORTHO05D004571 1.7e-53 213.0 148 71.6
Lj2g0026838 Lotus japonicus HOM05D003687 ORTHO05D004571 2.9e-53 212.2 150 70.0
MD15G1233200 Malus domestica HOM05D003687 ORTHO05D004571 1.1e-52 210.3 148 70.9
arahy.Tifrunner.gnm1.ann1.XW297T Arachis hypogaea HOM05D003687 ORTHO05D004571 2.5e-52 209.1 147 69.4
arahy.Tifrunner.gnm1.ann1.ZVTH8F Arachis hypogaea HOM05D003687 ORTHO05D004571 2.5e-52 209.1 147 69.4
Cpa.g.sc535.4 Carica papaya HOM05D003687 ORTHO05D004571 4.2e-52 208.4 150 69.3
CiPaw.07G004000 Carya illinoinensis HOM05D003687 ORTHO05D004571 4.2e-52 208.4 148 68.2
Manes.01G153800 Manihot esculenta HOM05D003687 ORTHO05D004571 1.2e-51 206.8 148 68.9
Lalb_Chr09g0321291 Lupinus albus HOM05D003687 ORTHO05D004571 2.1e-51 206.1 150 68.0
TPR.G25131 Trifolium pratense HOM05D003687 ORTHO05D004571 2.1e-51 206.1 150 68.7
Lalb_Chr05g0211911 Lupinus albus HOM05D003687 ORTHO05D004571 2.7e-51 205.7 150 67.3
PSO063G5755 Papaver somniferum HOM05D003687 ORTHO05D004571 2.7e-51 205.7 150 69.3
PSO339G2900 Papaver somniferum HOM05D003687 ORTHO05D004571 3.6e-51 205.3 150 69.3
Manes.02G112800 Manihot esculenta HOM05D003687 ORTHO05D004571 4.7e-51 204.9 148 67.6
TAR628G0600 Trochodendron aralioides HOM05D003687 ORTHO05D004571 4.7e-51 204.9 150 68.7
Cfa007065 Carpinus fangiana HOM05D003687 ORTHO05D004571 6.1e-51 204.5 148 67.6
QL06p052789 Quercus lobata HOM05D003687 ORTHO05D004571 6.1e-51 204.5 147 68.7
TAR376G1076 Trochodendron aralioides HOM05D003687 ORTHO05D004571 1.4e-50 203.4 150 68.7
ClCG10G000330 Citrullus lanatus HOM05D003687 ORTHO05D004571 1.8e-50 203.0 148 68.9
Actinidia17383 Actinidia chinensis HOM05D003687 ORTHO05D004571 2.3e-50 202.6 147 67.3
THA.LOC104819724 Tarenaya hassleriana HOM05D003687 ORTHO05D004571 2.3e-50 202.6 150 67.3
vmacro20525 Vaccinium macrocarpon HOM05D003687 ORTHO05D004571 2.3e-50 202.6 150 68.0
Hma1.2p1_0300F.1_g118150 Hydrangea macrophylla HOM05D003687 ORTHO05D004571 3.0e-50 202.2 150 68.0
QL06p053788 Quercus lobata HOM05D003687 ORTHO05D004571 3.0e-50 202.2 147 68.0
Sed0005072 Sechium edule HOM05D003687 ORTHO05D004571 3.0e-50 202.2 148 68.2
BraA09t36786Z Brassica rapa HOM05D003687 ORTHO05D004571 3.9e-50 201.8 150 66.0
Lj4P233T12 Lonicera japonica HOM05D003687 ORTHO05D004571 3.9e-50 201.8 150 68.0
Rhsim10G0197900 Rhododendron simsii HOM05D003687 ORTHO05D004571 3.9e-50 201.8 150 67.3
AT4G35630 Arabidopsis thaliana HOM05D003687 ORTHO05D004571 5.2e-50 201.4 148 66.2
Ca_24964_v3 Cicer arietinum L. HOM05D003687 ORTHO05D004571 5.2e-50 201.4 152 67.1
MELO3C013732.2 Cucumis melo HOM05D003687 ORTHO05D004571 5.2e-50 201.4 148 67.6
CsaV3_3G000370 Cucumis sativus L. HOM05D003687 ORTHO05D004571 5.2e-50 201.4 148 68.2
SalBow3G3833 Salvia bowleyana HOM05D003687 ORTHO05D004571 5.2e-50 201.4 150 68.0
Atru.chr3.957 Acer truncatum HOM05D003687 ORTHO05D004571 6.7e-50 201.1 150 67.3
Atru.chr3.969 Acer truncatum HOM05D003687 ORTHO05D004571 6.7e-50 201.1 150 67.3
CiPaw.08G180600 Carya illinoinensis HOM05D003687 ORTHO05D004571 6.7e-50 201.1 148 66.2
Ca_19449_v3 Cicer arietinum L. HOM05D003687 ORTHO05D004571 6.7e-50 201.1 149 67.1
Sp3g30960 Schrenkiella parvula HOM05D003687 ORTHO05D004571 6.7e-50 201.1 150 67.3
BcaB07g31719 Brassica carinata HOM05D003687 ORTHO05D004571 8.8e-50 200.7 150 66.0
C09p13480 Brassica napus HOM05D003687 ORTHO05D004571 8.8e-50 200.7 150 66.0
PGR119G1501 Punica granatum HOM05D003687 ORTHO05D004571 8.8e-50 200.7 150 66.7
Glyma.02G041900 Glycine max HOM05D003687 ORTHO05D004571 1.1e-49 200.3 156 63.5
Lsat_1_v5_gn_8_23040 Lactuca sativa HOM05D003687 ORTHO05D004571 1.1e-49 200.3 150 68.0
THA.LOC104807434 Tarenaya hassleriana HOM05D003687 ORTHO05D004571 1.1e-49 200.3 150 66.7
Solyc02g082830.3 Solanum lycopersicum HOM05D003687 ORTHO05D004571 1.5e-49 199.9 150 68.0
BcaC04g22959 Brassica carinata HOM05D003687 ORTHO05D004571 2.0e-49 199.5 150 65.3
BolC9t54238H Brassica oleracea HOM05D003687 ORTHO05D004571 2.0e-49 199.5 150 65.3
Ciclev10025659m.g Citrus clementina HOM05D003687 ORTHO05D004571 2.0e-49 199.5 150 66.7
Carub.0003s3171 Capsella rubella HOM05D003687 ORTHO05D004571 2.6e-49 199.1 150 66.7
Nitab4.5_0000702g0080 Nicotiana tabacum HOM05D003687 ORTHO05D004571 2.6e-49 199.1 150 66.7
PGSC0003DMG400001524 Solanum tuberosum HOM05D003687 ORTHO05D004571 2.6e-49 199.1 150 67.3
Psat0s1725g0080 Pisum sativum HOM05D003687 ORTHO05D004571 3.3e-49 198.7 149 65.8
Sopen02g027630 Solanum pennellii HOM05D003687 ORTHO05D004571 3.3e-49 198.7 150 67.3
unitig_699.g19680 Utricularia gibba HOM05D003687 ORTHO05D004571 3.3e-49 198.7 150 67.3
Aqoxy1G00525 Aquilegia oxysepala HOM05D003687 ORTHO05D004571 5.7e-49 198.0 150 66.0
CANSAT25G3704 Cannabis sativa HOM05D003687 ORTHO05D004571 5.7e-49 198.0 150 65.3
VMungo1215G1127 Vigna mungo HOM05D003687 ORTHO05D004571 5.7e-49 198.0 148 64.2
A09p11460 Brassica napus HOM05D003687 ORTHO05D004571 9.7e-49 197.2 150 64.0
Carub.0007s0467 Capsella rubella HOM05D003687 ORTHO05D004571 9.7e-49 197.2 150 64.7
CAN.G890.77 Capsicum annuum HOM05D003687 ORTHO05D004571 9.7e-49 197.2 150 66.0
Cc07_g11670 Coffea canephora HOM05D003687 ORTHO05D004571 9.7e-49 197.2 150 66.0
TPR.G18309 Trifolium pratense HOM05D003687 ORTHO05D004571 9.7e-49 197.2 149 66.4
Thhalv10023021m.g Eutrema salsugineum HOM05D003687 ORTHO05D004571 1.3e-48 196.8 150 66.0
CARHR243980 Cardamine hirsuta HOM05D003687 ORTHO05D004571 1.7e-48 196.4 148 64.9
Thecc.01G007000 Theobroma cacao HOM05D003687 ORTHO05D004571 1.7e-48 196.4 151 64.9
AL3G50590 Arabidopsis lyrata HOM05D003687 ORTHO05D004571 2.2e-48 196.1 150 66.0
AL7G15520 Arabidopsis lyrata HOM05D003687 ORTHO05D004571 2.2e-48 196.1 150 65.3
Duzib147G1246 Durio zibethinus HOM05D003687 ORTHO05D004571 2.2e-48 196.1 151 64.9
Peaxi162Scf01446g00005 Petunia axillaris HOM05D003687 ORTHO05D004571 2.2e-48 196.1 150 66.0
BolC3t20334H Brassica oleracea HOM05D003687 ORTHO05D004571 4.8e-48 194.9 150 64.7
Oeu028610.1 Olea europaea HOM05D003687 ORTHO05D004571 4.8e-48 194.9 151 66.9
AT2G17630 Arabidopsis thaliana HOM05D003687 ORTHO05D004571 6.3e-48 194.5 150 65.3
Gohir.D07G177500 Gossypium hirsutum HOM05D003687 ORTHO05D004571 6.3e-48 194.5 151 64.9
CSS0042676 Camellia sinensis var. sinensis HOM05D003687 ORTHO05D004571 8.2e-48 194.1 150 66.0
Thhalv10025259m.g Eutrema salsugineum HOM05D003687 ORTHO05D004571 8.2e-48 194.1 150 64.7
MBI05_g40602_MAGBIO Magnolia biondii HOM05D003687 ORTHO05D004571 8.2e-48 194.1 156 62.2
Sp7g33400 Schrenkiella parvula HOM05D003687 ORTHO05D004571 1.1e-47 193.7 150 64.7
COL.COLO4_22538 Corchorus olitorius HOM05D003687 ORTHO05D004571 1.4e-47 193.4 151 64.2
MSTRG.3621 Avicennia marina HOM05D003687 ORTHO05D004571 1.8e-47 193.0 151 66.9
Eucgr.I02231 Eucalyptus grandis HOM05D003687 ORTHO05D004571 1.8e-47 193.0 150 64.0
Psat2g150440 Pisum sativum HOM05D003687 ORTHO05D004571 1.8e-47 193.0 152 64.5
Migut.H02194 Erythranthe guttata HOM05D003687 ORTHO05D004571 2.4e-47 192.6 149 65.8
BcaC01g00508 Brassica carinata HOM05D003687 ORTHO05D004571 3.1e-47 192.2 150 64.0
C03p80790 Brassica napus HOM05D003687 ORTHO05D004571 3.1e-47 192.2 150 64.0
Glyma.11G084400 Glycine max HOM05D003687 ORTHO05D004571 3.1e-47 192.2 147 64.6
Hma1.2p1_2491F.1_g323220 Hydrangea macrophylla HOM05D003687 ORTHO05D004571 3.1e-47 192.2 150 65.3
DCAR_030822 Daucus carota HOM05D003687 ORTHO05D004571 4.1e-47 191.8 150 65.3
Medtr8g074010 Medicago truncatula HOM05D003687 ORTHO05D004571 4.1e-47 191.8 149 63.8
SGA_v2.0_scaffold2G00959 Striga asiatica HOM05D003687 ORTHO05D004571 4.1e-47 191.8 150 65.3
Gorai.001G198400 Gossypium raimondii HOM05D003687 ORTHO05D004571 9.1e-47 190.7 151 63.6
TWI53G1012 Tripterygium wilfordii HOM05D003687 ORTHO05D004571 9.1e-47 190.7 150 65.3
Phvul.002G115000 Phaseolus vulgaris HOM05D003687 ORTHO05D004571 1.2e-46 190.3 147 63.3
Glyma.01G159800 Glycine max HOM05D003687 ORTHO05D004571 1.6e-46 189.9 147 63.9
Phvul.003G269100 Phaseolus vulgaris HOM05D003687 ORTHO05D004571 1.6e-46 189.9 152 62.5
A08p21800 Brassica napus HOM05D003687 ORTHO05D004571 2.6e-46 189.1 150 62.7
Aa31LG8G14900 Aethionema arabicum HOM05D003687 ORTHO05D004571 3.5e-46 188.7 149 62.4
BraA08t34133Z Brassica rapa HOM05D003687 ORTHO05D004571 3.5e-46 188.7 150 62.0
Duzib264G0784 Durio zibethinus HOM05D003687 ORTHO05D004571 3.5e-46 188.7 151 63.6
Gohir.A07G170700 Gossypium hirsutum HOM05D003687 ORTHO05D004571 5.9e-46 188.0 151 63.6
SHI29483 Sapria himalayana HOM05D003687 ORTHO05D004571 5.9e-46 188.0 154 59.1
SGA_v2.0_scaffold108G30984 Striga asiatica HOM05D003687 ORTHO05D004571 1.7e-45 186.4 150 64.0
BcaB03g12420 Brassica carinata HOM05D003687 ORTHO05D004571 6.5e-45 184.5 158 60.1
CDE10G0671 Ceratophyllum demersum HOM05D003687 ORTHO05D004571 6.5e-45 184.5 150 60.7
HPP92_002248 Vanilla planifolia HOM05D003687 ORTHO05D004571 6.5e-45 184.5 150 62.0
ATR0329G002 Amborella trichopoda HOM05D003687 ORTHO05D004571 1.1e-44 183.7 150 62.0
Aa31LG6G12590 Aethionema arabicum HOM05D003687 ORTHO05D004571 1.5e-44 183.3 148 64.2
VMungo0251G3174 Vigna mungo HOM05D003687 ORTHO05D004571 3.2e-44 182.2 149 63.1
CDE10G0952 Ceratophyllum demersum HOM05D003687 ORTHO05D004571 5.5e-44 181.4 150 60.0
TWI09G0502 Tripterygium wilfordii HOM05D003687 ORTHO05D004571 9.4e-44 180.6 150 61.3
Os03g0157900 Oryza sativa ssp. japonica HOM05D003687 ORTHO05D004571 4.0e-42 175.3 150 59.3
Ah.03g148400 Amaranthus hybridus HOM05D003687 ORTHO05D004571 3.4e-41 172.2 155 59.4
EL10Ac6g15469 Beta vulgaris HOM05D003687 ORTHO05D004571 2.2e-40 169.5 152 57.9
Sc07g0001320 Simmondsia chinensis HOM05D003687 ORTHO05D004571 2.2e-40 169.5 150 56.7
SEGI_09550 Sequoiadendron giganteum HOM05D003687 ORTHO05D004571 3.7e-40 168.7 150 56.7
AUR62029452 Chenopodium quinoa HOM05D003687 ORTHO05D004571 4.8e-40 168.3 155 58.1
Zm00001eb004390 Zea mays HOM05D003687 ORTHO05D004571 4.8e-40 168.3 150 56.7
Pp3c9_15390 Physcomitrium patens HOM05D003687 ORTHO05D004571 1.9e-36 156.4 148 52.7
SMO259G0019 Selaginella moellendorffii HOM05D003687 ORTHO05D004571 7.2e-36 154.5 151 54.3
Mapoly0033s0118 Marchantia polymorpha HOM05D003687 ORTHO05D004571 1.4e-34 150.2 149 51.7
Haze_03674 Corylus avellana HOM05D003687 ORTHO05D004571 1.5e-33 146.7 118 61.9
CBR_g34176 Chara braunii HOM05D003687 ORTHO05D004571 5.7e-33 144.8 153 49.0
CBR_g54970 Chara braunii HOM05D003687 ORTHO05D004571 2.2e-32 142.9 153 48.4
HanXRQChr02g0050301 Helianthus annuus HOM05D003687 ORTHO05D004571 2.9e-29 132.5 102 62.7
HanXRQChr09g0253801 Helianthus annuus HOM05D003687 ORTHO05D004571 2.9e-29 132.5 102 63.7
Nitab4.5_0002967g0020 Nicotiana tabacum HOM05D003687 ORTHO05D004571 6.6e-29 131.3 111 61.3
QL06p052757 Quercus lobata HOM05D003687 ORTHO05D004571 2.8e-27 125.9 80 73.8
QL06p053814 Quercus lobata HOM05D003687 ORTHO05D004571 4.7e-27 125.2 84 71.4
Cre07.g331550 Chlamydomonas reinhardtii HOM05D003687 ORTHO05D004571 1.2e-25 120.6 146 42.5
QL06p052765 Quercus lobata HOM05D000009 ORTHO05D000008 2.0e-25 119.8 108 53.7
PRCOL_00000472 Prasinoderma coloniale HOM05D003687 ORTHO05D004571 5.7e-25 118.2 148 41.9
MCO11G731 Micromonas commoda HOM05D003687 ORTHO05D004571 5.4e-23 111.7 150 41.3
A06p33750 Brassica napus HOM05D003687 ORTHO05D004571 2.9e-21 105.9 98 59.2
GSVIVG01006497001 Vitis vinifera HOM05D003687 ORTHO05D004571 6.1e-19 98.2 150 42.0
ECA233G3718 Erigeron canadensis HOM05D003687 ORTHO05D004571 7.8e-14 81.3 147 36.1
SalBow2G1655 Salvia bowleyana HOM05D003687 ORTHO05D004571 1.1e-12 77.4 77 53.2
SalBow7G3504 Salvia bowleyana HOM05D003687 ORTHO05D004571 1.5e-12 77.0 77 53.2
Haze_26462 Corylus avellana HOM05D003687 ORTHO05D004571 2.5e-12 76.3 158 33.5
Dinv40174 Davidia involucrata HOM05D003687 ORTHO05D004571 1.8e-10 70.1 83 45.8
SalBow8G1645 Salvia bowleyana HOM05D003687 ORTHO05D004571 4.0e-10 68.9 77 50.6
SalBow6G4873 Salvia bowleyana HOM05D003687 ORTHO05D004571 6.8e-10 68.2 46 67.4
BcaB07g31718 Brassica carinata HOM05D003687 ORTHO05D004571 4.4e-09 65.5 30 80.0
SalBow6G6204 Salvia bowleyana HOM05D003687 ORTHO05D004571 2.9e-08 62.8 36 75.0
BcaB07g31714 Brassica carinata HOM05D003687 ORTHO05D004571 9.2e-07 57.8 25 88.0


User provided reference genes

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