Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0097211 Rosa chinensis HOM05D004607 ORTHO05D005836 6.5e-94 347.4 181 100.0
FAN28G2666 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.2e-84 316.6 181 91.2
FvH4_1g10350 Fragaria vesca HOM05D004607 ORTHO05D005836 2.8e-81 305.4 177 89.3
MD02G1117000 Malus domestica HOM05D004607 ORTHO05D005836 2.1e-76 289.3 181 82.3
MD02G1116800 Malus domestica HOM05D004607 ORTHO05D005836 1.4e-75 286.6 181 82.3
FAN26G2101 Fragaria x ananassa HOM05D004607 ORTHO05D005836 3.9e-75 285.0 206 76.2
Prupe.7G182100 Prunus persica HOM05D004607 ORTHO05D005836 3.9e-75 285.0 180 83.3
FvH4_1g10370 Fragaria vesca HOM05D004607 ORTHO05D005836 8.5e-70 267.3 190 76.3
CiPaw.08G181500 Carya illinoinensis HOM05D004607 ORTHO05D005836 3.3e-66 255.4 180 75.6
Potri.005G101300 Populus trichocarpa HOM05D004607 ORTHO05D005836 3.5e-63 245.4 182 71.4
CiPaw.07G003100 Carya illinoinensis HOM05D004607 ORTHO05D005836 1.0e-62 243.8 174 71.3
Cpa.g.c27001.3 Carica papaya HOM05D004607 ORTHO05D005836 3.8e-62 241.9 179 71.5
CANSAT80G1685 Cannabis sativa HOM05D004607 ORTHO05D005836 6.5e-62 241.1 182 68.1
CANSAT80G2088 Cannabis sativa HOM05D004607 ORTHO05D005836 6.5e-62 241.1 182 68.1
CSS0035278 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 5.5e-61 238.0 171 69.6
CSS0013050 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 9.4e-61 237.3 173 69.4
Hma1.2p1_0300F.1_g118020 Hydrangea macrophylla HOM05D004607 ORTHO05D005836 1.2e-60 236.9 174 69.5
TWI09G0436 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 2.7e-60 235.7 168 72.0
Dinv40187 Davidia involucrata HOM05D004607 ORTHO05D005836 1.0e-59 233.8 171 71.9
Dinv08165 Davidia involucrata HOM05D004607 ORTHO05D005836 4.0e-59 231.9 171 70.2
TWI73G0051 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 2.6e-58 229.2 170 70.6
Actinidia17362 Actinidia chinensis HOM05D004607 ORTHO05D005836 9.7e-58 227.3 171 67.3
CsaV3_3G000280 Cucumis sativus L. HOM05D004607 ORTHO05D005836 1.7e-57 226.5 174 66.1
Actinidia22900 Actinidia chinensis HOM05D004607 ORTHO05D005836 5.3e-56 221.5 173 66.5
Eucgr.I00568 Eucalyptus grandis HOM05D004607 ORTHO05D005836 5.3e-56 221.5 174 66.7
PGR042G1958 Punica granatum HOM05D004607 ORTHO05D005836 5.3e-56 221.5 176 66.5
Glyma.09G198400 Glycine max HOM05D004607 ORTHO05D005836 7.0e-56 221.1 172 66.3
GSVIVG01026644001 Vitis vinifera HOM05D004607 ORTHO05D005836 2.0e-55 219.5 172 65.7
Carub.0007s2507 Capsella rubella HOM05D004607 ORTHO05D005836 5.9e-55 218.0 176 63.6
AL7G38550 Arabidopsis lyrata HOM05D004607 ORTHO05D005836 1.0e-54 217.2 176 64.2
CARHR222820 Cardamine hirsuta HOM05D004607 ORTHO05D005836 1.3e-54 216.9 176 63.1
Haze_04009 Corylus avellana HOM05D004607 ORTHO05D005836 1.3e-54 216.9 148 73.0
Sp7g14990 Schrenkiella parvula HOM05D004607 ORTHO05D005836 3.8e-54 215.3 176 63.1
Cc07_g11810 Coffea canephora HOM05D004607 ORTHO05D005836 1.1e-53 213.8 171 64.9
Solyc02g082710.3 Solanum lycopersicum HOM05D004607 ORTHO05D005836 1.1e-53 213.8 167 67.1
Peaxi162Scf01051g00133 Petunia axillaris HOM05D004607 ORTHO05D005836 1.9e-53 213.0 173 67.6
Thhalv10026376m.g Eutrema salsugineum HOM05D004607 ORTHO05D005836 2.5e-53 212.6 177 61.6
Aa31LG2G12510 Aethionema arabicum HOM05D004607 ORTHO05D005836 3.2e-53 212.2 176 61.9
Haze_03657 Corylus avellana HOM05D004607 ORTHO05D005836 3.2e-53 212.2 153 71.2
Haze_03663 Corylus avellana HOM05D004607 ORTHO05D005836 3.2e-53 212.2 153 71.2
AT4G16444 Arabidopsis thaliana HOM05D004607 ORTHO05D005836 5.5e-53 211.5 176 62.5
Sopen02g027460 Solanum pennellii HOM05D004607 ORTHO05D005836 5.5e-53 211.5 167 66.5
Lalb_Chr05g0229661 Lupinus albus HOM05D004607 ORTHO05D005836 1.2e-52 210.3 180 62.8
Nitab4.5_0011694g0010 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.2e-52 210.3 171 66.1
BraA08t33239Z Brassica rapa HOM05D004607 ORTHO05D005836 2.1e-52 209.5 176 61.9
BolC8t48369H Brassica oleracea HOM05D004607 ORTHO05D005836 3.6e-52 208.8 176 61.4
Medtr8g073600 Medicago truncatula HOM05D004607 ORTHO05D005836 3.6e-52 208.8 168 63.7
Migut.C01149 Erythranthe guttata HOM05D004607 ORTHO05D005836 4.7e-52 208.4 172 61.0
Ciclev10016602m.g Citrus clementina HOM05D004607 ORTHO05D005836 6.1e-52 208.0 159 69.8
BolC7t45311H Brassica oleracea HOM05D004607 ORTHO05D005836 1.4e-51 206.8 174 60.9
Ca_02856_v3 Cicer arietinum L. HOM05D004607 ORTHO05D005836 2.3e-51 206.1 168 61.9
THA.LOC104819160 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 3.0e-51 205.7 176 60.2
Migut.K01195 Erythranthe guttata HOM05D004607 ORTHO05D005836 4.0e-51 205.3 172 59.9
MD15G1231800 Malus domestica HOM05D004607 ORTHO05D005836 5.2e-51 204.9 281 47.7
C07p47890 Brassica napus HOM05D004607 ORTHO05D005836 8.8e-51 204.1 175 61.1
A03p49830 Brassica napus HOM05D004607 ORTHO05D005836 1.5e-50 203.4 176 60.8
BraA03t14078Z Brassica rapa HOM05D004607 ORTHO05D005836 1.5e-50 203.4 176 60.8
Lj4g0003075 Lotus japonicus HOM05D004607 ORTHO05D005836 2.0e-50 203.0 167 61.7
CAN.G1238.9 Capsicum annuum HOM05D004607 ORTHO05D005836 3.4e-50 202.2 167 64.1
Migut.G00971 Erythranthe guttata HOM05D004607 ORTHO05D005836 5.7e-50 201.4 172 58.7
Lsat_1_v5_gn_3_68061 Lactuca sativa HOM05D004607 ORTHO05D005836 5.7e-50 201.4 171 59.1
Gorai.010G212400 Gossypium raimondii HOM05D004607 ORTHO05D005836 7.5e-50 201.1 166 62.7
Nitab4.5_0000467g0060 Nicotiana tabacum HOM05D004607 ORTHO05D005836 9.8e-50 200.7 180 61.1
Lalb_Chr09g0324751 Lupinus albus HOM05D004607 ORTHO05D005836 1.7e-49 199.9 178 60.1
Nn2g14487 Nelumbo nucifera HOM05D004607 ORTHO05D005836 4.8e-49 198.4 174 62.1
BcaC07g37988 Brassica carinata HOM05D004607 ORTHO05D005836 6.3e-49 198.0 177 60.5
THA.LOC104826422 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 6.3e-49 198.0 183 59.6
Phvul.003G269900 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 1.8e-48 196.4 172 61.0
Thecc.01G005800 Theobroma cacao HOM05D004607 ORTHO05D005836 1.8e-48 196.4 157 67.5
A08p12190 Brassica napus HOM05D004607 ORTHO05D005836 3.1e-48 195.7 201 54.2
Sopen02g012590 Solanum pennellii HOM05D004607 ORTHO05D005836 5.4e-48 194.9 176 59.7
Solyc02g038815.1 Solanum lycopersicum HOM05D004607 ORTHO05D005836 1.2e-47 193.7 176 59.1
MBI11_g22240_MAGBIO Magnolia biondii HOM05D004607 ORTHO05D005836 5.9e-47 191.4 177 58.8
MSTRG.1461 Avicennia marina HOM05D004607 ORTHO05D005836 2.3e-46 189.5 172 58.7
Nitab4.5_0000702g0180 Nicotiana tabacum HOM05D004607 ORTHO05D005836 5.0e-46 188.3 158 65.2
ClCG10G000250 Citrullus lanatus HOM05D004607 ORTHO05D005836 6.6e-46 188.0 153 63.4
Psat0s2561g0240 Pisum sativum HOM05D004607 ORTHO05D005836 8.6e-46 187.6 171 58.5
TAR628G0874 Trochodendron aralioides HOM05D004607 ORTHO05D005836 1.9e-45 186.4 154 63.0
vmacro23502 Vaccinium macrocarpon HOM05D004607 ORTHO05D005836 3.3e-45 185.7 152 63.8
HanXRQChr16g0531851 Helianthus annuus HOM05D004607 ORTHO05D005836 7.2e-45 184.5 168 54.8
Lalb_Chr05g0214781 Lupinus albus HOM05D004607 ORTHO05D005836 7.2e-45 184.5 178 56.2
Sed0016741 Sechium edule HOM05D004607 ORTHO05D005836 2.1e-44 183.0 128 71.1
PGSC0003DMG400001520 Solanum tuberosum HOM05D004607 ORTHO05D005836 2.8e-44 182.6 147 65.3
Glyma.01G158900 Glycine max HOM05D004607 ORTHO05D005836 4.7e-44 181.8 173 57.8
Psat4g104720 Pisum sativum HOM05D004607 ORTHO05D026060 1.8e-43 179.9 157 60.5
Duzib187G1597 Durio zibethinus HOM05D004607 ORTHO05D005836 2.3e-43 179.5 163 59.5
Sabra05G0083700 Salix brachista HOM05D004607 ORTHO05D005836 1.2e-42 177.2 140 67.1
Glyma.11G085750 Glycine max HOM05D004607 ORTHO05D005836 2.6e-42 176.0 174 56.3
unitig_26.g9912 Utricularia gibba HOM05D004607 ORTHO05D005836 3.4e-42 175.6 174 51.7
Lj2g0013322 Lotus japonicus HOM05D004607 ORTHO05D005836 7.5e-42 174.5 179 52.5
Phvul.002G116550 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 1.7e-41 173.3 166 55.4
TPR.G33861 Trifolium pratense HOM05D004607 ORTHO05D005836 1.7e-41 173.3 171 56.1
Migut.M00637 Erythranthe guttata HOM05D004607 ORTHO05D005836 6.3e-41 171.4 130 63.8
BcaNung00194 Brassica carinata HOM05D004607 ORTHO05D005836 4.1e-40 168.7 176 54.5
ECA246G3880 Erigeron canadensis HOM05D004607 ORTHO05D005836 7.0e-40 167.9 164 52.4
arahy.Tifrunner.gnm1.ann1.322DBQ Arachis hypogaea HOM05D004607 ORTHO05D005836 9.2e-40 167.5 175 51.4
arahy.Tifrunner.gnm1.ann1.WAU4HL Arachis hypogaea HOM05D004607 ORTHO05D005836 9.2e-40 167.5 175 51.4
HanXRQChr09g0259831 Helianthus annuus HOM05D004607 ORTHO05D005836 9.2e-40 167.5 172 52.3
TPR.G21990 Trifolium pratense HOM05D004607 ORTHO05D005836 9.2e-40 167.5 174 52.9
Zm00001eb320900 Zea mays HOM05D004607 ORTHO05D005836 2.0e-39 166.4 168 53.6
PSO210G1290 Papaver somniferum HOM05D004607 ORTHO05D005836 5.9e-39 164.9 173 52.0
Sc16g0000240 Simmondsia chinensis HOM05D004607 ORTHO05D005836 7.8e-39 164.5 154 56.5
Manes.14G160966 Manihot esculenta HOM05D004607 ORTHO05D005836 1.7e-38 163.3 178 51.7
Duzib264G0749 Durio zibethinus HOM05D004607 ORTHO05D005836 3.9e-38 162.2 140 62.1
PSO761G0125 Papaver somniferum HOM05D004607 ORTHO05D005836 5.0e-38 161.8 173 50.9
ATR0807G168 Amborella trichopoda HOM05D004607 ORTHO05D005836 1.9e-37 159.8 172 49.4
Migut.N00197 Erythranthe guttata HOM05D004607 ORTHO05D005836 2.5e-37 159.5 154 54.5
Aqoxy5G01013 Aquilegia oxysepala HOM05D004607 ORTHO05D005836 3.3e-37 159.1 153 56.2
Os06g0198700 Oryza sativa ssp. japonica HOM05D004607 ORTHO05D005836 3.3e-37 159.1 164 51.2
QL06p052929 Quercus lobata HOM05D004607 ORTHO05D005836 1.6e-36 156.8 90 81.1
Atru.chr8.743 Acer truncatum HOM05D004607 ORTHO05D005836 2.8e-36 156.0 134 61.2
SalBow7G2290 Salvia bowleyana HOM05D004607 ORTHO05D005836 2.8e-36 156.0 207 47.3
SGA_v2.0_scaffold52G18984 Striga asiatica HOM05D004607 ORTHO05D005836 3.6e-36 155.6 137 59.9
CDE05G3414 Ceratophyllum demersum HOM05D004607 ORTHO05D005836 4.7e-36 155.2 128 61.7
COL.COLO4_13415 Corchorus olitorius HOM05D004607 ORTHO05D005836 4.7e-36 155.2 143 61.5
SalBow7G0705 Salvia bowleyana HOM05D004607 ORTHO05D005836 8.0e-36 154.5 214 44.4
EL10Ac3g05419 Beta vulgaris HOM05D004607 ORTHO05D005836 3.1e-35 152.5 146 55.5
SalBow7G4137 Salvia bowleyana HOM05D004607 ORTHO05D005836 3.1e-35 152.5 214 45.8
Lsat_1_v5_gn_8_112021 Lactuca sativa HOM05D000005 ORTHO05D000012 2.2e-33 146.4 135 57.8
Zm00001eb373950 Zea mays HOM05D004607 ORTHO05D005836 3.7e-33 145.6 162 49.4
AUR62031422 Chenopodium quinoa HOM05D004607 ORTHO05D005836 6.4e-33 144.8 145 55.2
HPP92_002453 Vanilla planifolia HOM05D004607 ORTHO05D005836 1.4e-32 143.7 170 50.6
CSS0045229 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 7.0e-32 141.4 171 49.1
AUR62021120 Chenopodium quinoa HOM05D004607 ORTHO05D005836 1.2e-31 140.6 154 52.6
CDE05G1839 Ceratophyllum demersum HOM05D001594 ORTHO05D006997 2.0e-31 139.8 180 48.3
Nitab4.5_0001365g0040 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.7e-30 136.7 144 53.5
Rhsim10G0196300 Rhododendron simsii HOM05D004607 ORTHO05D005836 2.3e-30 136.3 144 54.9
TAR376G0723 Trochodendron aralioides HOM05D004607 ORTHO05D005836 2.1e-28 129.8 114 64.0
unitig_749.g13934 Utricularia gibba HOM05D004607 ORTHO05D005836 2.1e-28 129.8 143 46.2
FAN23G1441 Fragaria x ananassa HOM05D004607 ORTHO05D005836 3.6e-28 129.0 84 83.3
SGA_v2.0_scaffold24G10477 Striga asiatica HOM05D004607 ORTHO05D005836 8.9e-27 124.4 173 43.9
Hund00045 Selenicereus undatus HOM05D004607 ORTHO05D005836 2.6e-26 122.9 157 48.4
ECA232G4775 Erigeron canadensis HOM05D004607 ORTHO05D005836 1.1e-24 117.5 131 49.6
Peaxi162Scf00580g00027 Petunia axillaris HOM05D004607 ORTHO05D005836 1.1e-24 117.5 176 44.3
PGSC0003DMG400017476 Solanum tuberosum HOM05D004607 ORTHO05D005836 3.2e-24 115.9 83 61.4
CAN.G328.18 Capsicum annuum HOM05D004607 ORTHO05D005836 1.2e-23 114.0 91 60.4
MELO3C013722.2 Cucumis melo HOM05D004607 ORTHO05D005836 1.8e-19 100.1 84 63.1
QL06p052933 Quercus lobata HOM05D004607 ORTHO05D005836 1.8e-19 100.1 90 64.4
Duzib147G0723 Durio zibethinus HOM05D004607 ORTHO05D005836 4.4e-18 95.5 88 60.2
VMungo1215G0163 Vigna mungo HOM05D004607 ORTHO05D005836 5.8e-18 95.1 110 55.5
Mapoly0007s0238 Marchantia polymorpha HOM05D004607 ORTHO05D005836 2.9e-17 92.8 170 35.3
Gohir.D06G180900 Gossypium hirsutum HOM05D004607 ORTHO05D005836 6.4e-17 91.7 80 63.8
Glyma.16G116500 Glycine max HOM05D004607 ORTHO05D005836 2.4e-16 89.7 89 57.3
Gohir.A06G172006 Gossypium hirsutum HOM05D004607 ORTHO05D005836 5.4e-16 88.6 80 61.2
Rhsim10G0196100 Rhododendron simsii HOM05D004607 ORTHO05D005836 1.2e-15 87.4 106 50.9
AagrBONN_evm.TU.Sc2ySwM_362.230 Anthoceros agrestis HOM05D004607 ORTHO05D005836 2.7e-15 86.3 138 41.3
Pp3c7_8860 Physcomitrium patens HOM05D004607 ORTHO05D005836 1.0e-14 84.3 167 32.3
FAN19G1486 Fragaria x ananassa HOM05D004607 ORTHO05D005836 3.3e-13 79.3 50 86.0
Cpa.g.sc117.83 Carica papaya HOM05D004607 ORTHO05D005836 4.0e-11 72.4 66 60.6
VMungo0251G1148 Vigna mungo HOM05D004607 ORTHO05D005836 1.9e-08 63.5 50 70.0
VMungo0703G0001 Vigna mungo HOM05D004607 ORTHO05D005836 3.2e-08 62.8 48 72.9
Cre09.g387504 Chlamydomonas reinhardtii HOM05D004607 ORTHO05D005836 4.2e-08 62.4 145 28.3
CBR_g18647 Chara braunii HOM05D004607 ORTHO05D005836 1.3e-06 57.4 142 28.2


User provided reference genes

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