Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0097181 Rosa chinensis HOM05D006972 ORTHO05D008519 1.8e-102 375.9 193 100.0
FAN19G2622 Fragaria x ananassa HOM05D006972 ORTHO05D008519 4.0e-94 348.2 189 93.7
Prupe.7G182900 Prunus persica HOM05D006972 ORTHO05D008519 1.1e-86 323.6 193 85.5
Manes.01G155400 Manihot esculenta HOM05D006972 ORTHO05D008519 4.0e-86 321.6 191 82.2
Atru.chr3.134 Acer truncatum HOM05D006972 ORTHO05D008519 7.6e-85 317.4 191 81.2
FAN23G2574 Fragaria x ananassa HOM05D006972 ORTHO05D008519 6.5e-84 314.3 230 75.7
GSVIVG01026641001 Vitis vinifera HOM05D006972 ORTHO05D008519 6.5e-84 314.3 193 81.9
TAR628G0904 Trochodendron aralioides HOM05D006972 ORTHO05D008519 1.9e-83 312.8 193 78.2
Potri.005G101501 Populus trichocarpa HOM05D006972 ORTHO05D008519 5.5e-83 311.2 183 82.0
QL06p052953 Quercus lobata HOM05D006972 ORTHO05D008519 5.5e-83 311.2 214 73.8
TWI73G0968 Tripterygium wilfordii HOM05D006972 ORTHO05D008519 7.1e-83 310.8 192 79.2
Cfa007077 Carpinus fangiana HOM05D006972 ORTHO05D008519 9.3e-83 310.5 193 78.8
CSS0043244 Camellia sinensis var. sinensis HOM05D006972 ORTHO05D008519 1.6e-82 309.7 193 77.2
CiPaw.08G181600 Carya illinoinensis HOM05D006972 ORTHO05D008519 2.7e-82 308.9 193 79.3
Ciclev10026547m.g Citrus clementina HOM05D006972 ORTHO05D008519 6.1e-82 307.8 192 78.6
TPR.G33865 Trifolium pratense HOM05D006972 ORTHO05D008519 7.9e-82 307.4 193 79.8
Lalb_Chr16g0380011 Lupinus albus HOM05D006972 ORTHO05D008519 1.0e-81 307.0 193 79.3
MELO3C013724.2 Cucumis melo HOM05D006972 ORTHO05D008519 1.3e-81 306.6 192 76.6
Rhsim10G0195900 Rhododendron simsii HOM05D006972 ORTHO05D008519 1.8e-81 306.2 192 78.1
Glyma.01G158800 Glycine max HOM05D006972 ORTHO05D008519 2.3e-81 305.8 193 79.8
Duzib147G0479 Durio zibethinus HOM05D006972 ORTHO05D008519 3.0e-81 305.4 191 75.9
Eucgr.I02225 Eucalyptus grandis HOM05D006972 ORTHO05D008519 8.7e-81 303.9 193 76.2
Sed0027466 Sechium edule HOM05D006972 ORTHO05D008519 1.5e-80 303.1 192 76.6
Oeu012451.1 Olea europaea HOM05D006972 ORTHO05D008519 1.9e-80 302.8 193 75.6
Actinidia17360 Actinidia chinensis HOM05D006972 ORTHO05D008519 2.5e-80 302.4 193 76.7
ClCG10G000270 Citrullus lanatus HOM05D006972 ORTHO05D008519 5.7e-80 301.2 185 78.9
Psat2g148200 Pisum sativum HOM05D006972 ORTHO05D008519 5.7e-80 301.2 193 78.2
Cpa.g.sc365.5 Carica papaya HOM05D006972 ORTHO05D008519 7.4e-80 300.8 193 76.2
Haze_03655 Corylus avellana HOM05D006972 ORTHO05D008519 7.4e-80 300.8 185 79.5
MSTRG.3630 Avicennia marina HOM05D006972 ORTHO05D008519 1.3e-79 300.1 193 76.7
Nitab4.5_0005297g0020 Nicotiana tabacum HOM05D006972 ORTHO05D008519 2.2e-79 299.3 191 75.9
CANSAT25G3183 Cannabis sativa HOM05D006972 ORTHO05D008519 2.8e-79 298.9 190 77.4
Nitab4.5_0000495g0120 Nicotiana tabacum HOM05D006972 ORTHO05D008519 2.8e-79 298.9 191 74.3
CsaV3_3G000300 Cucumis sativus L. HOM05D006972 ORTHO05D008519 8.2e-79 297.4 192 74.5
Ca_24981_v3 Cicer arietinum L. HOM05D006972 ORTHO05D008519 1.1e-78 297.0 193 77.2
vmacro20633 Vaccinium macrocarpon HOM05D006972 ORTHO05D008519 1.1e-78 297.0 192 72.9
Cc07_g11850 Coffea canephora HOM05D006972 ORTHO05D008519 3.1e-78 295.4 190 75.3
Thecc.01G005600 Theobroma cacao HOM05D006972 ORTHO05D008519 3.1e-78 295.4 191 73.3
Solyc03g032120.3 Solanum lycopersicum HOM05D006972 ORTHO05D008519 1.2e-77 293.5 191 73.8
Migut.L00961 Erythranthe guttata HOM05D006972 ORTHO05D008519 1.5e-77 293.1 191 77.0
Gohir.A07G171100 Gossypium hirsutum HOM05D006972 ORTHO05D008519 2.0e-77 292.7 191 72.8
HanXRQChr14g0442531 Helianthus annuus HOM05D006972 ORTHO05D008519 2.0e-77 292.7 189 78.3
Gohir.D07G177900 Gossypium hirsutum HOM05D006972 ORTHO05D008519 3.4e-77 292.0 191 72.3
SalBow5G0785 Salvia bowleyana HOM05D006972 ORTHO05D008519 4.5e-77 291.6 193 74.1
Gorai.001G199000 Gossypium raimondii HOM05D006972 ORTHO05D008519 5.9e-77 291.2 191 72.3
Aqoxy5G01011 Aquilegia oxysepala HOM05D006972 ORTHO05D008519 5.0e-76 288.1 193 74.6
Lsat_1_v5_gn_2_73640 Lactuca sativa HOM05D006972 ORTHO05D008519 6.5e-76 287.7 185 77.3
Zm00001eb002450 Zea mays HOM05D006972 ORTHO05D008519 6.5e-76 287.7 184 73.4
FvH4_1g10330 Fragaria vesca HOM05D006972 ORTHO05D008519 8.5e-76 287.3 154 94.8
ECA238G2655 Erigeron canadensis HOM05D006972 ORTHO05D008519 1.4e-75 286.6 190 76.8
Lj2g0018473 Lotus japonicus HOM05D006972 ORTHO05D008519 1.4e-75 286.6 177 80.8
Nn5g30989 Nelumbo nucifera HOM05D006972 ORTHO05D008519 4.2e-75 285.0 235 63.0
Phvul.002G116601 Phaseolus vulgaris HOM05D006972 ORTHO05D008519 7.2e-75 284.3 193 75.1
AL8G45620 Arabidopsis lyrata HOM05D006972 ORTHO05D008519 2.1e-74 282.7 193 71.0
VMungo1215G1992 Vigna mungo HOM05D006972 ORTHO05D008519 1.8e-73 279.6 193 74.6
THA.LOC104826441 Tarenaya hassleriana HOM05D006972 ORTHO05D008519 3.0e-73 278.9 193 69.4
MBI05_g14344_MAGBIO Magnolia biondii HOM05D006972 ORTHO05D008519 6.7e-73 277.7 191 72.3
PSO541G2195 Papaver somniferum HOM05D006972 ORTHO05D008519 3.3e-72 275.4 191 70.7
Hund19696 Selenicereus undatus HOM05D006972 ORTHO05D008519 7.4e-72 274.2 192 67.7
EL10Ac5g11121 Beta vulgaris HOM05D006972 ORTHO05D008519 2.2e-71 272.7 193 66.8
AT5G66005 Arabidopsis thaliana HOM05D006972 ORTHO05D008519 2.8e-71 272.3 193 68.9
CAN.G354.14 Capsicum annuum HOM05D006972 ORTHO05D008519 2.8e-71 272.3 177 73.4
AUR62021571 Chenopodium quinoa HOM05D006972 ORTHO05D008519 3.7e-71 271.9 193 66.8
Ah.02g113990 Amaranthus hybridus HOM05D006972 ORTHO05D008519 3.1e-70 268.9 190 65.8
AUR62008520 Chenopodium quinoa HOM05D006972 ORTHO05D008519 3.1e-70 268.9 193 65.8
arahy.Tifrunner.gnm1.ann1.B19VPR Arachis hypogaea HOM05D006972 ORTHO05D008519 5.3e-70 268.1 164 79.9
arahy.Tifrunner.gnm1.ann1.K20VQB Arachis hypogaea HOM05D006972 ORTHO05D008519 5.3e-70 268.1 164 79.9
PSO675G3277 Papaver somniferum HOM05D006972 ORTHO05D008519 1.2e-69 266.9 167 75.4
ATR0807G046 Amborella trichopoda HOM05D006972 ORTHO05D008519 3.8e-68 261.9 189 66.1
CDE04G1133 Ceratophyllum demersum HOM05D006972 ORTHO05D008519 6.5e-68 261.2 176 69.9
COL.COLO4_24144 Corchorus olitorius HOM05D006972 ORTHO05D008519 7.2e-67 257.7 171 71.9
Medtr5g024200 Medicago truncatula HOM05D006972 ORTHO05D008519 1.0e-65 253.8 160 77.5
RcHm_v2.0_Chr1g0346531 Rosa chinensis HOM05D006972 ORTHO05D008519 1.0e-65 253.8 140 92.9
Haze_03661 Corylus avellana HOM05D006972 ORTHO05D008519 1.8e-65 253.1 153 79.7
RcHm_v2.0_Chr2g0090391 Rosa chinensis HOM05D006972 ORTHO05D008519 1.8e-65 253.1 140 92.9
HPP92_026034 Vanilla planifolia HOM05D006972 ORTHO05D008519 8.8e-65 250.8 186 62.9
Carub.0008s2851 Capsella rubella HOM05D006972 ORTHO05D008519 5.3e-62 241.5 198 62.1
SGA_v2.0_scaffold132G34519 Striga asiatica HOM05D006972 ORTHO05D008519 3.5e-61 238.8 170 68.2
Sc03g0003950 Simmondsia chinensis HOM05D006972 ORTHO05D008519 7.7e-61 237.7 153 72.5
FAN26G0227 Fragaria x ananassa HOM05D006972 ORTHO05D008519 2.8e-55 219.2 154 76.0
MD15G1231300 Malus domestica HOM05D006972 ORTHO05D008519 1.9e-51 206.5 125 82.4
FAN28G2862 Fragaria x ananassa HOM05D006972 ORTHO05D008519 5.5e-51 204.9 118 89.8
unitig_747.g21812 Utricularia gibba HOM05D006972 ORTHO05D008519 1.5e-48 196.8 207 53.6
Peaxi162Scf00122g02416 Petunia axillaris HOM05D006972 ORTHO05D008519 1.3e-47 193.7 120 75.0
Os03g0130750 Oryza sativa ssp. japonica HOM05D006972 ORTHO05D008519 2.2e-44 183.0 126 67.5
Mapoly0114s0024 Marchantia polymorpha HOM05D006972 ORTHO05D008519 9.4e-43 177.6 212 50.5
Sopen03g005970 Solanum pennellii HOM05D006972 ORTHO05D008519 5.4e-38 161.8 103 74.8
Lsat_1_v5_gn_5_10160 Lactuca sativa HOM05D006972 ORTHO05D008519 8.6e-36 154.5 133 64.7
SMO352G0055 Selaginella moellendorffii HOM05D006972 ORTHO05D008519 2.8e-34 149.4 134 59.7
CANSAT35G0485 Cannabis sativa HOM05D006972 ORTHO05D008519 6.1e-34 148.3 90 82.2
RcHm_v2.0_Chr5g0047551 Rosa chinensis HOM05D006972 ORTHO05D008519 1.0e-33 147.5 80 93.8
RcHm_v2.0_Chr5g0015201 Rosa chinensis HOM05D006972 ORTHO05D008519 7.0e-30 134.8 71 97.2
Cre16.g682050 Chlamydomonas reinhardtii HOM05D006972 ORTHO05D008519 5.9e-29 131.7 191 44.0
MD15G1231400 Malus domestica HOM05D006972 ORTHO05D008519 1.0e-28 131.0 73 86.3
Glyma.11G085800 Glycine max HOM05D006972 ORTHO05D008519 2.3e-28 129.8 140 55.7
Actinidia22899 Actinidia chinensis HOM05D006972 ORTHO05D008519 2.3e-25 119.8 76 78.9
MCO16G109 Micromonas commoda HOM05D006972 ORTHO05D008519 4.4e-24 115.5 194 39.7
Mapoly0023s0154 Marchantia polymorpha HOM05D006972 ORTHO05D008519 7.0e-22 108.2 185 36.8
Pp3c7_7150 Physcomitrium patens HOM05D006972 ORTHO05D008519 9.2e-22 107.8 185 37.8
SMO147G0393 Selaginella moellendorffii HOM05D006972 ORTHO05D008519 6.0e-21 105.1 135 37.8
Lsat_1_v5_gn_1_125281 Lactuca sativa HOM05D006972 ORTHO05D008519 1.3e-20 104.0 75 73.3
Pp3c11_19180 Physcomitrium patens HOM05D006972 ORTHO05D008519 1.1e-19 100.9 186 37.1
Lsat_1_v5_gn_8_30121 Lactuca sativa HOM05D006972 ORTHO05D008519 8.1e-18 94.7 60 78.3
CBR_g19759 Chara braunii HOM05D006972 ORTHO05D008519 4.0e-17 92.4 130 46.2
PRCOL_00004399 Prasinoderma coloniale HOM05D006972 ORTHO05D008519 5.2e-17 92.0 165 38.8
arahy.Tifrunner.gnm1.ann1.9GY3HT Arachis hypogaea HOM05D006972 ORTHO05D008519 6.8e-17 91.7 78 60.3
arahy.Tifrunner.gnm1.ann1.J6JT3S Arachis hypogaea HOM05D006972 ORTHO05D008519 9.8e-16 87.8 75 61.3
MD02G1111700 Malus domestica HOM05D006972 ORTHO05D008519 3.7e-15 85.9 174 36.2
arahy.Tifrunner.gnm1.ann1.A1T4XS Arachis hypogaea HOM05D006972 ORTHO05D008519 1.8e-09 67.0 59 54.2
RcHm_v2.0_Chr5g0015211 Rosa chinensis HOM05D006972 ORTHO05D008519 2.3e-09 66.6 33 97.0
arahy.Tifrunner.gnm1.ann1.BGC890 Arachis hypogaea HOM05D006972 ORTHO05D008519 4.4e-08 62.4 61 49.2
AagrBONN_evm.TU.Sc2ySwM_228.4669 Anthoceros agrestis HOM05D006972 ORTHO05D008519 2.4e-06 56.6 67 40.3
Lsat_1_v5_gn_3_12301 Lactuca sativa HOM05D035019 ORTHO05D008519 7.1e-06 55.1 33 75.8
Lsat_1_v5_gn_8_143201 Lactuca sativa HOM05D035019 ORTHO05D008519 7.1e-06 55.1 33 75.8


User provided reference genes

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