Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 7.2e-188 660.6 379 100.0
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 7.2e-180 634.0 379 96.6
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 2.1e-179 632.5 379 96.3
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 2.8e-179 632.1 379 96.3
FAN23G0043 Fragaria x ananassa HOM05D004420 ORTHO05D005048 3.5e-174 615.1 379 94.5
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 7.3e-148 527.7 381 78.2
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 1.9e-132 476.5 387 75.5
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 9.6e-132 474.2 385 75.6
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 1.8e-114 416.8 396 64.6
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 1.7e-112 410.2 381 63.3
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 2.2e-107 393.3 393 61.1
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 3.7e-107 392.5 396 64.6
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 7.2e-103 378.3 388 59.5
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 9.3e-103 377.9 387 62.5
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 3.6e-102 375.9 391 60.6
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 1.4e-101 374.0 402 58.7
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 3.7e-99 365.9 378 59.3
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 3.7e-99 365.9 383 60.3
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 6.3e-99 365.2 380 61.8
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 6.9e-98 361.7 381 53.0
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 2.0e-97 360.1 375 57.1
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 3.4e-97 359.4 382 60.2
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 4.5e-97 359.0 391 60.6
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 4.5e-97 359.0 383 58.0
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 1.3e-96 357.5 399 59.1
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 3.8e-96 355.9 381 59.8
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 5.0e-96 355.5 380 56.3
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 5.0e-96 355.5 380 56.3
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 6.5e-96 355.1 381 55.4
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 1.9e-95 353.6 375 57.6
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 2.5e-95 353.2 381 59.8
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 1.2e-94 350.9 381 55.1
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 2.1e-94 350.1 380 57.9
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 5.1e-93 345.5 392 58.9
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 4.4e-92 342.4 394 58.4
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 5.7e-92 342.0 394 57.4
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 5.7e-92 342.0 396 58.1
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 3.7e-91 339.3 382 57.1
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 8.2e-91 338.2 384 56.8
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 3.1e-90 336.3 381 56.4
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 5.3e-90 335.5 333 65.5
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 6.9e-90 335.1 389 53.2
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 6.9e-90 335.1 381 59.6
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 1.5e-89 334.0 381 54.3
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 1.3e-88 330.9 387 57.6
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 2.9e-88 329.7 382 52.4
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 3.8e-88 329.3 356 59.3
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 6.5e-88 328.6 360 53.6
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 5.5e-87 325.5 381 55.1
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 1.6e-86 323.9 383 52.2
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 1.6e-86 323.9 383 52.2
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 1.0e-85 321.2 382 55.8
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 3.9e-85 319.3 384 53.9
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 1.5e-84 317.4 383 54.0
Atru.chr3.127 Acer truncatum HOM05D004420 ORTHO05D005048 4.4e-84 315.8 386 56.0
Lalb_Chr09g0334351 Lupinus albus HOM05D004420 ORTHO05D005048 2.4e-82 310.1 380 54.7
Glyma.09G197900 Glycine max HOM05D004420 ORTHO05D005048 1.3e-80 304.3 356 55.9
Lalb_Chr16g0380091 Lupinus albus HOM05D004420 ORTHO05D005048 4.7e-78 295.8 377 54.1
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 2.3e-77 293.5 383 50.7
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 5.2e-77 292.4 378 50.5
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 2.0e-76 290.4 385 49.4
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 2.6e-76 290.0 353 55.0
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 3.3e-76 289.7 382 51.8
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 7.5e-76 288.5 382 46.9
Cc07_g11920 Coffea canephora HOM05D004420 ORTHO05D005048 9.7e-76 288.1 397 49.6
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 9.7e-76 288.1 386 51.6
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 4.1e-74 282.7 383 51.4
Oeu043391.2 Olea europaea HOM05D004420 ORTHO05D005048 5.3e-74 282.3 398 49.0
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 9.4e-71 271.6 397 48.4
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 1.2e-70 271.2 344 55.2
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 3.6e-70 269.6 398 47.5
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 4.7e-70 269.2 344 54.9
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 1.8e-69 267.3 369 48.8
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 3.0e-69 266.5 396 47.7
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 4.0e-69 266.2 382 45.0
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 8.8e-69 265.0 344 54.9
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 2.0e-68 263.8 398 47.2
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 7.5e-68 261.9 397 47.4
EL10Ac6g15050 Beta vulgaris HOM05D004420 ORTHO05D005048 1.4e-66 257.7 385 49.4
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 9.1e-66 255.0 382 45.3
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 7.7e-65 251.9 395 45.3
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 1.3e-64 251.1 389 49.4
Ah.02g123000 Amaranthus hybridus HOM05D000464 ORTHO05D005048 2.3e-64 250.4 385 46.8
Peaxi162Scf00121g00249 Petunia axillaris HOM05D004420 ORTHO05D005048 2.9e-64 250.0 398 48.0
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 2.9e-64 250.0 337 52.8
GSVIVG01022291001 Vitis vinifera HOM05D004420 ORTHO05D005048 5.0e-64 249.2 384 47.9
Lj4g0016332 Lotus japonicus HOM05D004420 ORTHO05D005048 7.2e-63 245.4 376 44.4
AUR62003743 Chenopodium quinoa HOM05D004420 ORTHO05D005048 1.4e-61 241.1 263 52.1
AUR62002052 Chenopodium quinoa HOM05D004420 ORTHO05D005048 3.0e-61 240.0 382 42.1
TAR376G0940 Trochodendron aralioides HOM05D004420 ORTHO05D005048 1.5e-60 237.7 385 47.0
Lj4P237T30 Lonicera japonica HOM05D004420 ORTHO05D005048 2.6e-60 236.9 391 49.9
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 9.8e-60 235.0 380 45.3
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 1.1e-58 231.5 377 43.0
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 1.1e-58 231.5 377 43.0
Sc07g0001390 Simmondsia chinensis HOM05D004420 ORTHO05D005048 1.4e-58 231.1 382 45.0
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 2.0e-52 210.7 391 42.7
SalBow2G0301 Salvia bowleyana HOM05D004420 ORTHO05D005048 9.2e-50 201.8 387 44.2
SalBow2G0742 Salvia bowleyana HOM05D004420 ORTHO05D005048 9.2e-50 201.8 387 44.2
TAR625G1485 Trochodendron aralioides HOM05D004420 ORTHO05D005048 1.0e-48 198.4 381 41.5
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 2.3e-48 197.2 385 43.6
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 5.0e-48 196.1 384 41.9
Nn6g31686 Nelumbo nucifera HOM05D004420 ORTHO05D005048 9.5e-47 191.8 319 48.3
TAR381G0338 Trochodendron aralioides HOM05D004420 ORTHO05D005048 3.6e-46 189.9 334 45.2
HanXRQChr16g0531901 Helianthus annuus HOM05D004420 ORTHO05D005048 2.0e-44 184.1 384 44.3
HanXRQChr16g0531911 Helianthus annuus HOM05D004420 ORTHO05D005048 2.6e-44 183.7 384 44.3
Migut.F00308 Erythranthe guttata HOM05D004420 ORTHO05D005048 9.2e-42 175.3 387 40.3
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 1.2e-41 174.9 390 39.0
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 1.6e-41 174.5 386 37.6
ECA246G3765 Erigeron canadensis HOM05D004420 ORTHO05D005048 1.7e-40 171.0 390 46.4
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 1.7e-40 171.0 380 40.3
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 3.0e-40 170.2 383 37.3
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 3.9e-40 169.9 319 39.8
PSO210G4741 Papaver somniferum HOM05D004420 ORTHO05D005048 5.1e-40 169.5 359 40.4
PGSC0003DMG400018682 Solanum tuberosum HOM05D004420 ORTHO05D005048 1.1e-39 168.3 318 44.3
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 2.5e-39 167.2 319 39.2
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 3.3e-39 166.8 383 34.7
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 5.6e-39 166.0 384 39.3
PSO761G0558 Papaver somniferum HOM05D004420 ORTHO05D005048 1.6e-38 164.5 350 40.0
CiPaw.13G121300 Carya illinoinensis HOM05D004420 ORTHO05D005048 4.0e-37 159.8 162 68.5
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 2.6e-36 157.1 384 38.3
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 4.4e-36 156.4 312 42.3
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 4.9e-35 152.9 384 38.8
Peaxi162Scf00580g00013 Petunia axillaris HOM05D004420 ORTHO05D005048 6.4e-35 152.5 225 53.3
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 4.6e-33 146.4 390 38.2
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 6.0e-33 146.0 382 35.1
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 1.7e-32 144.4 324 37.7
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 7.3e-31 139.0 339 40.7
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 6.8e-29 132.5 196 45.4
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 8.9e-29 132.1 338 39.3
MBI08_g12255_MAGBIO Magnolia biondii HOM05D004420 ORTHO05D005048 1.7e-27 127.9 370 36.8
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 1.9e-26 124.4 321 39.6
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 7.1e-26 122.5 316 37.0
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 7.1e-26 122.5 340 35.6
unitig_52.g17736 Utricularia gibba HOM05D004420 ORTHO05D005048 2.7e-25 120.6 305 41.3
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 4.6e-25 119.8 312 36.2
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 6.0e-25 119.4 312 36.2
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 7.8e-25 119.0 340 35.3
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 1.3e-24 118.2 313 35.5
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 1.7e-24 117.9 377 34.7
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 1.5e-23 114.8 315 36.8
Lsat_1_v5_gn_3_67941 Lactuca sativa HOM05D004420 ORTHO05D005048 2.5e-23 114.0 405 35.6
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 1.4e-21 108.2 313 34.2
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 1.4e-21 108.2 313 34.2
Solyc02g082570.3 Solanum lycopersicum HOM05D004420 ORTHO05D005048 3.1e-21 107.1 160 50.6
CDE05G3647 Ceratophyllum demersum HOM05D004420 ORTHO05D005048 8.4e-19 99.0 370 28.9
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 6.0e-17 92.8 302 35.1
AT2G17540 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 9.6e-15 85.5 381 33.1
BraA07t28141Z Brassica rapa HOM05D004420 ORTHO05D005048 3.6e-14 83.6 340 30.0
THA.LOC104804296 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 6.2e-14 82.8 119 45.4
BraA01t00293Z Brassica rapa HOM05D004420 ORTHO05D005048 8.1e-14 82.4 305 34.4
BolC7t40973H Brassica oleracea HOM05D004420 ORTHO05D005048 2.4e-13 80.9 340 30.3
A01p03090 Brassica napus HOM05D004420 ORTHO05D005048 1.2e-12 78.6 305 32.5
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 1.5e-12 78.2 312 27.9
BolC1t00331H Brassica oleracea HOM05D004420 ORTHO05D005048 1.1e-10 72.0 205 38.0
C07p61200 Brassica napus HOM05D004420 ORTHO05D005048 1.9e-10 71.2 311 34.1
BolC7t46546H Brassica oleracea HOM05D004420 ORTHO05D005048 3.2e-10 70.5 309 34.3
BraA03t15434Z Brassica rapa HOM05D004420 ORTHO05D005048 1.2e-09 68.6 373 31.1
Thhalv10022985m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 3.0e-08 63.9 139 43.9
BcaNung00585 Brassica carinata HOM05D004420 ORTHO05D005048 8.7e-08 62.4 204 36.8
A03p63630 Brassica napus HOM05D004420 ORTHO05D005048 8.7e-08 62.4 307 33.2
C01p03440 Brassica napus HOM05D004420 ORTHO05D005048 8.7e-08 62.4 204 36.8
Os06g0728500 Oryza sativa ssp. japonica HOM05D060560 ORTHO05D005048 3.7e-06 57.0 392 26.3


User provided reference genes

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