Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0096661 Rosa chinensis HOM05D006312 ORTHO05D007843 6.1e-103 377.5 189 100.0
FAN23G3058 Fragaria x ananassa HOM05D006312 ORTHO05D007843 7.0e-91 337.4 189 91.0
FAN23G0139 Fragaria x ananassa HOM05D006312 ORTHO05D007843 2.9e-89 332.0 189 91.0
FAN26G2993 Fragaria x ananassa HOM05D006312 ORTHO05D007843 2.9e-89 332.0 189 91.0
FvH4_1g09790 Fragaria vesca HOM05D006312 ORTHO05D007843 6.5e-89 330.9 188 90.4
FAN28G0218 Fragaria x ananassa HOM05D006312 ORTHO05D007843 6.5e-89 330.9 189 89.9
FAN19G0451 Fragaria x ananassa HOM05D006312 ORTHO05D007843 1.9e-88 329.3 189 89.9
Prupe.7G188400 Prunus persica HOM05D006312 ORTHO05D007843 2.7e-82 308.9 189 80.4
MD02G1107600 Malus domestica HOM05D006312 ORTHO05D007843 5.5e-80 301.2 191 78.5
MD15G1226900 Malus domestica HOM05D006312 ORTHO05D007843 1.5e-64 250.0 163 76.1
Atru.chr2.1887 Acer truncatum HOM05D006312 ORTHO05D007843 2.6e-61 239.2 189 65.1
TAR376G0343 Trochodendron aralioides HOM05D006312 ORTHO05D007843 2.6e-61 239.2 188 66.0
Ciclev10012864m.g Citrus clementina HOM05D006312 ORTHO05D007843 5.8e-61 238.0 189 63.5
Thecc.05G202100 Theobroma cacao HOM05D006312 ORTHO05D007843 4.9e-60 235.0 188 63.8
CANSAT21G2119 Cannabis sativa HOM05D006312 ORTHO05D007843 1.1e-59 233.8 187 63.6
Cfa007119 Carpinus fangiana HOM05D006312 ORTHO05D007843 7.0e-59 231.1 187 63.1
COL.COLO4_27421 Corchorus olitorius HOM05D006312 ORTHO05D007843 3.5e-58 228.8 188 62.2
TWI34G0319 Tripterygium wilfordii HOM05D006312 ORTHO05D007843 7.8e-58 227.6 190 64.7
Eucgr.J02573 Eucalyptus grandis HOM05D006312 ORTHO05D007843 1.1e-56 223.8 187 60.4
Hund13396 Selenicereus undatus HOM05D006312 ORTHO05D007843 1.9e-56 223.0 192 62.0
Sabra16G0308500 Salix brachista HOM05D006312 ORTHO05D007843 3.3e-56 222.2 189 63.5
Potri.001G455900 Populus trichocarpa HOM05D006312 ORTHO05D007843 5.6e-56 221.5 189 61.9
Cpa.g.sc178.37 Carica papaya HOM05D006312 ORTHO05D007843 9.5e-56 220.7 189 61.9
PGR102G2008 Punica granatum HOM05D006312 ORTHO05D007843 1.6e-55 219.9 184 63.0
Psat3g060840 Pisum sativum HOM05D006312 ORTHO05D007843 3.6e-55 218.8 140 77.9
MBI04_g11525_MAGBIO Magnolia biondii HOM05D006312 ORTHO05D007843 4.7e-55 218.4 192 62.5
Sc10g0004590 Simmondsia chinensis HOM05D006312 ORTHO05D007843 6.2e-55 218.0 189 61.9
Sed0011609 Sechium edule HOM05D006312 ORTHO05D007843 6.8e-54 214.5 187 58.3
TPR.G19116 Trifolium pratense HOM05D006312 ORTHO05D007843 6.8e-54 214.5 134 76.9
Aqoxy6G03048 Aquilegia oxysepala HOM05D006312 ORTHO05D007843 2.0e-53 213.0 140 72.9
Manes.02G117611 Manihot esculenta HOM05D006312 ORTHO05D007843 2.0e-53 213.0 189 60.3
MELO3C007014.2 Cucumis melo HOM05D006312 ORTHO05D007843 3.4e-53 212.2 187 61.0
Glyma.03G158200 Glycine max HOM05D006312 ORTHO05D007843 9.9e-53 210.7 173 62.4
Ca_08638_v3 Cicer arietinum L. HOM05D006312 ORTHO05D007843 1.7e-52 209.9 137 73.7
Glyma.19G160500 Glycine max HOM05D006312 ORTHO05D007843 1.7e-52 209.9 177 60.5
Gorai.013G007100 Gossypium raimondii HOM05D006312 ORTHO05D007843 4.9e-52 208.4 123 79.7
CsaV3_6G052950 Cucumis sativus L. HOM05D006312 ORTHO05D007843 1.1e-51 207.2 189 58.2
Gohir.A13G006700 Gossypium hirsutum HOM05D006312 ORTHO05D007843 1.1e-51 207.2 151 69.5
Gohir.D13G006900 Gossypium hirsutum HOM05D006312 ORTHO05D007843 1.4e-51 206.8 189 57.7
VMungo1383G0261 Vigna mungo HOM05D006312 ORTHO05D007843 1.4e-51 206.8 166 63.3
Phvul.001G155800 Phaseolus vulgaris HOM05D006312 ORTHO05D007843 7.1e-51 204.5 135 71.1
FAN23G0893 Fragaria x ananassa HOM05D006312 ORTHO05D007843 1.2e-50 203.8 107 94.4
arahy.Tifrunner.gnm1.ann1.Y34PHS Arachis hypogaea HOM05D006312 ORTHO05D007843 1.6e-50 203.4 133 73.7
arahy.Tifrunner.gnm1.ann1.YWP2KZ Arachis hypogaea HOM05D006312 ORTHO05D007843 1.6e-50 203.4 157 64.3
ClCG01G025710 Citrullus lanatus HOM05D006312 ORTHO05D007843 1.6e-50 203.4 200 55.0
EL10Ac2g02752 Beta vulgaris HOM05D006312 ORTHO05D007843 2.1e-50 203.0 121 79.3
ATR0605G230 Amborella trichopoda HOM05D006312 ORTHO05D007843 3.5e-50 202.2 125 76.0
CSS0005301 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 1.0e-49 200.7 153 66.0
Medtr7g095930 Medicago truncatula HOM05D006312 ORTHO05D007843 1.0e-49 200.7 138 73.9
Actinidia28758 Actinidia chinensis HOM05D006312 ORTHO05D007843 1.7e-49 199.9 152 65.1
PSO541G2566 Papaver somniferum HOM05D006312 ORTHO05D007843 2.3e-49 199.5 144 70.8
CSS0026635 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 3.9e-49 198.7 154 65.6
Rhsim08G0025300 Rhododendron simsii HOM05D006312 ORTHO05D007843 3.9e-49 198.7 145 67.6
AUR62032612 Chenopodium quinoa HOM05D006312 ORTHO05D007843 5.1e-49 198.4 136 71.3
Actinidia35692 Actinidia chinensis HOM05D006312 ORTHO05D007843 1.5e-48 196.8 188 55.3
AUR62031725 Chenopodium quinoa HOM05D006312 ORTHO05D007843 1.5e-48 196.8 141 68.8
PSO675G2564 Papaver somniferum HOM05D006312 ORTHO05D007843 5.6e-48 194.9 144 70.1
Potri.011G146200 Populus trichocarpa HOM05D006312 ORTHO05D007843 5.6e-48 194.9 112 78.6
Carub.0005s1789 Capsella rubella HOM05D006312 ORTHO05D007843 2.8e-47 192.6 166 62.7
DCAR_016700 Daucus carota HOM05D006312 ORTHO05D007843 4.7e-47 191.8 153 62.7
Haze_03648 Corylus avellana HOM05D006312 ORTHO05D007843 6.2e-47 191.4 163 61.3
Thhalv10010756m.g Eutrema salsugineum HOM05D006312 ORTHO05D007843 6.2e-47 191.4 182 57.1
Hma1.2p1_0034F.1_g021580 Hydrangea macrophylla HOM05D006312 ORTHO05D007843 6.2e-47 191.4 158 63.9
HPP92_005603 Vanilla planifolia HOM05D006312 ORTHO05D007843 6.2e-47 191.4 151 62.3
AL5G31950 Arabidopsis lyrata HOM05D006312 ORTHO05D007843 8.1e-47 191.0 171 60.2
A01p23400 Brassica napus HOM05D006312 ORTHO05D007843 1.1e-46 190.7 138 70.3
BraA01t02247Z Brassica rapa HOM05D006312 ORTHO05D007843 1.1e-46 190.7 138 70.3
Lj1g0018795 Lotus japonicus HOM05D006312 ORTHO05D007843 1.8e-46 189.9 171 59.6
QL06p053470 Quercus lobata HOM05D006312 ORTHO05D007843 1.8e-46 189.9 193 55.4
C01p29030 Brassica napus HOM05D006312 ORTHO05D007843 2.4e-46 189.5 138 70.3
BolC1t02835H Brassica oleracea HOM05D006312 ORTHO05D007843 2.4e-46 189.5 138 70.3
BcaNung00380 Brassica carinata HOM05D006312 ORTHO05D007843 3.1e-46 189.1 138 69.6
AT3G51510 Arabidopsis thaliana HOM05D006312 ORTHO05D007843 5.2e-46 188.3 147 63.9
BraA09t39926Z Brassica rapa HOM05D006312 ORTHO05D007843 5.2e-46 188.3 184 60.3
Sp5g10730 Schrenkiella parvula HOM05D006312 ORTHO05D007843 6.8e-46 188.0 135 71.1
Lsat_1_v5_gn_3_68340 Lactuca sativa HOM05D006312 ORTHO05D007843 2.6e-45 186.0 138 67.4
SalBow5G1176 Salvia bowleyana HOM05D006312 ORTHO05D007843 2.6e-45 186.0 113 77.9
C08p26760 Brassica napus HOM05D006312 ORTHO05D007843 4.4e-45 185.3 166 61.4
BolC8t50289H Brassica oleracea HOM05D006312 ORTHO05D007843 4.4e-45 185.3 166 61.4
CARHR161090 Cardamine hirsuta HOM05D006312 ORTHO05D007843 4.4e-45 185.3 143 65.0
A09p44660 Brassica napus HOM05D006312 ORTHO05D007843 5.8e-45 184.9 131 73.3
Cc07_g12330 Coffea canephora HOM05D006312 ORTHO05D007843 9.9e-45 184.1 135 66.7
Oeu024786.1 Olea europaea HOM05D006312 ORTHO05D007843 9.9e-45 184.1 194 54.1
BcaB01g00508 Brassica carinata HOM05D006312 ORTHO05D007843 1.3e-44 183.7 165 60.6
THA.LOC104815359 Tarenaya hassleriana HOM05D006312 ORTHO05D007843 1.3e-44 183.7 143 62.9
Nn6g34643 Nelumbo nucifera HOM05D006312 ORTHO05D007843 2.2e-44 183.0 164 57.9
SEGI_12518 Sequoiadendron giganteum HOM05D006312 ORTHO05D007843 2.2e-44 183.0 146 62.3
CAN.G883.25 Capsicum annuum HOM05D006312 ORTHO05D007843 3.8e-44 182.2 136 66.9
Peaxi162Scf00981g00214 Petunia axillaris HOM05D006312 ORTHO05D007843 3.8e-44 182.2 119 73.1
Nitab4.5_0003141g0020 Nicotiana tabacum HOM05D006312 ORTHO05D007843 8.4e-44 181.0 138 66.7
Nitab4.5_0003878g0040 Nicotiana tabacum HOM05D006312 ORTHO05D007843 8.4e-44 181.0 149 62.4
HanXRQChr16g0532211 Helianthus annuus HOM05D006312 ORTHO05D007843 1.1e-43 180.6 142 62.7
Solyc02g068270.4 Solanum lycopersicum HOM05D006312 ORTHO05D007843 1.4e-43 180.3 140 66.4
ECA246G0189 Erigeron canadensis HOM05D006312 ORTHO05D007843 1.9e-43 179.9 138 66.7
Sopen02g017370 Solanum pennellii HOM05D006312 ORTHO05D007843 1.9e-43 179.9 140 66.4
THA.LOC104808852 Tarenaya hassleriana HOM05D006312 ORTHO05D007843 2.4e-43 179.5 140 66.4
Lalb_Chr01g0019941 Lupinus albus HOM05D006312 ORTHO05D007843 9.2e-43 177.6 131 70.2
Dinv28290 Davidia involucrata HOM05D006312 ORTHO05D007843 1.6e-42 176.8 149 65.8
Migut.K01209 Erythranthe guttata HOM05D006312 ORTHO05D007843 3.5e-42 175.6 140 65.0
SGA_v2.0_scaffold132G34566 Striga asiatica HOM05D006312 ORTHO05D007843 4.6e-42 175.3 116 72.4
Dinv24398 Davidia involucrata HOM05D006312 ORTHO05D007843 6.0e-42 174.9 140 67.1
MSTRG.3652 Avicennia marina HOM05D006312 ORTHO05D007843 7.8e-42 174.5 135 67.4
CiPaw.08G182900 Carya illinoinensis HOM05D006312 ORTHO05D007843 3.0e-41 172.6 114 76.3
CDE07G0026 Ceratophyllum demersum HOM05D006312 ORTHO05D007843 6.2e-39 164.9 143 60.8
Zm00001eb291320 Zea mays HOM05D006312 ORTHO05D007843 3.4e-37 159.1 115 62.6
Os05g0490900 Oryza sativa ssp. japonica HOM05D006312 ORTHO05D007843 4.4e-37 158.7 128 62.5
Lj2A507T48 Lonicera japonica HOM05D006312 ORTHO05D007843 5.8e-37 158.3 164 54.9
Ah.12g058670 Amaranthus hybridus HOM05D006312 ORTHO05D007843 1.7e-36 156.8 95 77.9
GSVIVG01026613001 Vitis vinifera HOM05D006312 ORTHO05D007843 1.9e-35 153.3 88 81.8
vmacro18480 Vaccinium macrocarpon HOM05D006312 ORTHO05D007843 2.1e-34 149.8 120 62.5
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 1.7e-33 146.7 145 54.5
unitig_748.g7258 Utricularia gibba HOM05D006312 ORTHO05D007843 3.0e-33 146.0 148 54.1
SMO356G0733 Selaginella moellendorffii HOM05D006312 ORTHO05D007843 5.1e-33 145.2 110 63.6
AagrBONN_evm.TU.Sc2ySwM_117.3170 Anthoceros agrestis HOM05D006312 ORTHO05D007843 7.3e-32 141.4 134 52.2
Hma1.2p1_0034F.1_g021590 Hydrangea macrophylla HOM05D006312 ORTHO05D007843 1.6e-31 140.2 119 63.0
CBR_g16852 Chara braunii HOM05D006312 ORTHO05D007843 3.1e-30 136.0 135 54.8
Mapoly0072s0008 Marchantia polymorpha HOM05D006312 ORTHO05D007843 1.4e-27 127.1 173 38.2
Pp3c12_25230 Physcomitrium patens HOM05D006312 ORTHO05D007843 1.1e-24 117.5 145 41.4
Cre16.g679300 Chlamydomonas reinhardtii HOM05D006312 ORTHO05D007843 3.0e-17 92.8 147 38.8
Aa31LG10G3290 Aethionema arabicum HOM05D001371 ORTHO05D001319 1.5e-16 90.5 84 58.3
MCO03G312 Micromonas commoda HOM05D006312 ORTHO05D007843 2.1e-15 86.7 98 44.9
CSS0018042 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 3.1e-14 82.8 51 72.5
CSS0013138 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 1.8e-09 67.0 61 54.1
PRCOL_00002065 Prasinoderma coloniale HOM05D006312 ORTHO05D007843 6.3e-07 58.5 81 42.0


User provided reference genes

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