Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0096641 Rosa chinensis HOM05D006398 ORTHO05D007983 2.0e-64 249.2 148 100.0
FvH4_1g09810 Fragaria vesca HOM05D006398 ORTHO05D007983 2.6e-61 238.8 148 85.1
FAN19G1193 Fragaria x ananassa HOM05D006398 ORTHO05D007983 2.6e-61 238.8 148 85.1
FAN26G0304 Fragaria x ananassa HOM05D006398 ORTHO05D007983 8.5e-60 233.8 148 83.8
FAN23G0152 Fragaria x ananassa HOM05D006398 ORTHO05D007983 5.5e-59 231.1 148 83.1
FAN28G0584 Fragaria x ananassa HOM05D006398 ORTHO05D007983 1.5e-56 223.0 148 84.5
Prupe.7G188600 Prunus persica HOM05D006398 ORTHO05D007983 3.7e-47 191.8 148 68.2
Thecc.04G122700 Theobroma cacao HOM05D006398 ORTHO05D007983 1.6e-34 149.8 148 55.4
Gohir.A07G076575 Gossypium hirsutum HOM05D006398 ORTHO05D007983 6.1e-34 147.9 147 64.6
MD15G1226600 Malus domestica HOM05D006398 ORTHO05D007983 5.2e-33 144.8 134 61.9
Ca_25041_v3 Cicer arietinum L. HOM05D006398 ORTHO05D007983 2.0e-32 142.9 142 58.5
Duzib133G0235 Durio zibethinus HOM05D006398 ORTHO05D007983 2.6e-32 142.5 143 62.9
CiPaw.03G212200 Carya illinoinensis HOM05D006398 ORTHO05D007983 1.3e-31 140.2 143 65.7
Cfa011161 Carpinus fangiana HOM05D006398 ORTHO05D007983 1.7e-31 139.8 144 63.9
COL.COLO4_15698 Corchorus olitorius HOM05D006398 ORTHO05D007983 1.7e-31 139.8 145 60.0
Gohir.D07G081300 Gossypium hirsutum HOM05D006398 ORTHO05D007983 1.7e-31 139.8 147 60.5
Gorai.001G086400 Gossypium raimondii HOM05D006398 ORTHO05D007983 1.7e-31 139.8 147 60.5
Lj2g0016631 Lotus japonicus HOM05D006398 ORTHO05D007983 6.4e-31 137.9 141 60.3
QL06p053503 Quercus lobata HOM05D006398 ORTHO05D007983 6.4e-31 137.9 149 61.1
Dinv28289 Davidia involucrata HOM05D006398 ORTHO05D007983 1.4e-30 136.7 145 51.7
Medtr5g025015 Medicago truncatula HOM05D006398 ORTHO05D007983 3.2e-30 135.6 142 53.5
Dinv19113 Davidia involucrata HOM05D006398 ORTHO05D007983 5.4e-30 134.8 147 51.7
Dinv24399 Davidia involucrata HOM05D006398 ORTHO05D007983 9.2e-30 134.0 144 51.4
Gohir.A11G167300 Gossypium hirsutum HOM05D006398 ORTHO05D007983 9.2e-30 134.0 145 60.0
Cfa007121 Carpinus fangiana HOM05D006398 ORTHO05D007983 2.0e-29 132.9 143 67.1
Manes.02G117704 Manihot esculenta HOM05D006398 ORTHO05D007983 2.0e-29 132.9 148 51.4
TPR.G33762 Trifolium pratense HOM05D006398 ORTHO05D007983 2.7e-29 132.5 143 53.8
Gorai.007G185900 Gossypium raimondii HOM05D006398 ORTHO05D007983 7.8e-29 131.0 145 59.3
Ciclev10026700m.g Citrus clementina HOM05D006398 ORTHO05D007983 1.3e-28 130.2 146 59.6
Gohir.D11G173600 Gossypium hirsutum HOM05D006398 ORTHO05D007983 2.3e-28 129.4 139 59.7
Lalb_Chr16g0380261 Lupinus albus HOM05D006398 ORTHO05D007983 2.3e-28 129.4 142 59.9
Psat2g147080 Pisum sativum HOM05D006398 ORTHO05D007983 3.0e-28 129.0 142 52.1
TAR381G1497 Trochodendron aralioides HOM05D006398 ORTHO05D007983 3.9e-28 128.6 151 49.0
CSS0046434 Camellia sinensis var. sinensis HOM05D006398 ORTHO05D007983 5.0e-28 128.3 146 51.4
CSS0002146 Camellia sinensis var. sinensis HOM05D006398 ORTHO05D007983 8.6e-28 127.5 146 51.4
Actinidia28761 Actinidia chinensis HOM05D006398 ORTHO05D007983 4.3e-27 125.2 147 55.8
Atru.chr3.7 Acer truncatum HOM05D006398 ORTHO05D007983 5.6e-27 124.8 149 51.7
Manes.01G158600 Manihot esculenta HOM05D006398 ORTHO05D007983 7.3e-27 124.4 139 50.4
Hma1.2p1_0085F.1_g044270 Hydrangea macrophylla HOM05D006398 ORTHO05D007983 1.6e-26 123.2 146 50.7
PGR119G1180 Punica granatum HOM05D006398 ORTHO05D007983 3.6e-26 122.1 148 61.5
Glyma.11G089000 Glycine max HOM05D006398 ORTHO05D007983 6.2e-26 121.3 142 62.0
Nn6g31587 Nelumbo nucifera HOM05D006398 ORTHO05D007983 1.1e-25 120.6 148 52.0
TAR376G1029 Trochodendron aralioides HOM05D006398 ORTHO05D007983 1.4e-25 120.2 145 49.7
TWI53G1768 Tripterygium wilfordii HOM05D006398 ORTHO05D007983 3.1e-25 119.0 140 60.7
vmacro20410 Vaccinium macrocarpon HOM05D006398 ORTHO05D007983 6.8e-25 117.9 139 49.6
Potri.011G146400 Populus trichocarpa HOM05D006398 ORTHO05D007983 1.2e-24 117.1 147 46.3
PGR042G1229 Punica granatum HOM05D006398 ORTHO05D007983 4.4e-24 115.2 148 58.8
MBI04_g11522_MAGBIO Magnolia biondii HOM05D006398 ORTHO05D007983 5.8e-24 114.8 145 50.3
Nitab4.5_0011544g0020 Nicotiana tabacum HOM05D006398 ORTHO05D007983 5.8e-24 114.8 137 46.7
Eucgr.J02575 Eucalyptus grandis HOM05D006398 ORTHO05D007983 7.5e-24 114.4 144 56.9
Nitab4.5_0012518g0010 Nicotiana tabacum HOM05D006398 ORTHO05D007983 2.2e-23 112.8 137 46.0
VMungo1215G0575 Vigna mungo HOM05D006398 ORTHO05D007983 2.2e-23 112.8 139 62.6
Aqoxy5G00947 Aquilegia oxysepala HOM05D006398 ORTHO05D007983 2.9e-23 112.5 143 54.5
CANSAT56G1034 Cannabis sativa HOM05D006398 ORTHO05D007983 2.9e-23 112.5 135 60.7
Cfa000559 Carpinus fangiana HOM05D006398 ORTHO05D007983 2.9e-23 112.5 96 63.5
Sabra11G0131300 Salix brachista HOM05D006398 ORTHO05D007983 2.9e-23 112.5 144 44.4
Lj4P245T44 Lonicera japonica HOM05D006398 ORTHO05D007983 4.9e-23 111.7 144 47.2
Cfa012756 Carpinus fangiana HOM05D006398 ORTHO05D007983 6.4e-23 111.3 98 79.6
Oeu000786.1 Olea europaea HOM05D006398 ORTHO05D007983 1.4e-22 110.2 146 51.4
MSTRG.19082 Avicennia marina HOM05D006398 ORTHO05D007983 1.9e-22 109.8 146 47.9
Peaxi162Scf00981g00021 Petunia axillaris HOM05D006398 ORTHO05D007983 4.1e-22 108.6 137 51.1
Phvul.002G119800 Phaseolus vulgaris HOM05D006398 ORTHO05D007983 4.1e-22 108.6 137 60.6
DCAR_014127 Daucus carota HOM05D006398 ORTHO05D007983 3.5e-21 105.5 138 48.6
MD02G1107400 Malus domestica HOM05D006398 ORTHO05D007983 3.5e-21 105.5 94 62.8
PGSC0003DMG400009426 Solanum tuberosum HOM05D006398 ORTHO05D007983 7.8e-21 104.4 137 43.8
Haze_03650 Corylus avellana HOM05D000071 ORTHO05D007983 3.9e-20 102.1 98 77.6
Glyma.01G155800 Glycine max HOM05D006398 ORTHO05D007983 3.9e-20 102.1 125 61.6
Sopen02g017390 Solanum pennellii HOM05D006398 ORTHO05D007983 3.9e-20 102.1 137 43.1
Solyc02g068290.2 Solanum lycopersicum HOM05D006398 ORTHO05D007983 5.1e-20 101.7 137 43.1
Rhsim10G0190200 Rhododendron simsii HOM05D006398 ORTHO05D007983 8.6e-20 100.9 100 53.0
CAN.G883.23 Capsicum annuum HOM05D006398 ORTHO05D007983 1.1e-19 100.5 145 52.4
Sabra16G0308300 Salix brachista HOM05D006398 ORTHO05D007983 4.3e-19 98.6 147 41.5
CsaV3_6G047960 Cucumis sativus L. HOM05D006398 ORTHO05D007983 1.2e-18 97.1 125 46.4
SalBow3G3387 Salvia bowleyana HOM05D006398 ORTHO05D007983 1.2e-18 97.1 134 44.0
PSO017G7180 Papaver somniferum HOM05D006398 ORTHO05D007983 1.6e-18 96.7 139 43.9
HanXRQChr10g0316121 Helianthus annuus HOM05D006398 ORTHO05D007983 3.6e-18 95.5 143 44.1
PSO017G0885 Papaver somniferum HOM05D006398 ORTHO05D007983 4.7e-18 95.1 142 43.0
ATR0605G223 Amborella trichopoda HOM05D006398 ORTHO05D007983 2.3e-17 92.8 143 52.4
MELO3C007985.2 Cucumis melo HOM05D006398 ORTHO05D007983 3.1e-17 92.4 125 47.2
Oeu024785.2 Olea europaea HOM05D006398 ORTHO05D007983 3.1e-17 92.4 146 40.4
Sed0010545 Sechium edule HOM05D006398 ORTHO05D007983 5.2e-17 91.7 141 42.6
ECA238G1438 Erigeron canadensis HOM05D006398 ORTHO05D007983 9.9e-16 87.4 139 44.6
TAR628G0945 Trochodendron aralioides HOM05D006398 ORTHO05D007983 2.9e-15 85.9 107 49.5
HPP92_018846 Vanilla planifolia HOM05D006398 ORTHO05D007983 1.1e-14 84.0 142 39.4
Migut.J00328 Erythranthe guttata HOM05D006398 ORTHO05D007983 1.4e-14 83.6 143 37.8
Sed0016714 Sechium edule HOM05D006398 ORTHO05D007983 1.9e-14 83.2 85 67.1
Zm00001eb236520 Zea mays HOM05D006398 ORTHO05D007983 7.1e-14 81.3 144 51.4
Hma1.2p1_0353F.1_g133130 Hydrangea macrophylla HOM05D006398 ORTHO05D007983 4.6e-13 78.6 142 36.6
Lalb_Chr05g0215011 Lupinus albus HOM05D006398 ORTHO05D007983 1.7e-12 76.6 142 49.3
Lsat_1_v5_gn_2_72860 Lactuca sativa HOM05D006398 ORTHO05D007983 5.1e-12 75.1 73 53.4
THA.LOC109117268 Tarenaya hassleriana HOM05D006398 ORTHO05D007983 9.5e-11 70.9 140 51.4
EL10Ac5g11754 Beta vulgaris HOM05D006398 ORTHO05D007983 1.2e-10 70.5 127 35.4
Ah.02g115220 Amaranthus hybridus HOM05D006398 ORTHO05D007983 1.6e-10 70.1 133 36.1
CDE06G2001 Ceratophyllum demersum HOM05D006398 ORTHO05D007983 1.6e-10 70.1 136 40.4
Os02g0193500 Oryza sativa ssp. japonica HOM05D006398 ORTHO05D007983 2.1e-10 69.7 143 35.0
Sc03g0004180 Simmondsia chinensis HOM05D006398 ORTHO05D007983 3.6e-10 68.9 146 46.6
HPP92_018898 Vanilla planifolia HOM05D006398 ORTHO05D007983 3.6e-10 68.9 139 36.7
SGA_v2.0_scaffold126G33784 Striga asiatica HOM05D006398 ORTHO05D007983 8.1e-10 67.8 136 34.6
CDE04G3216 Ceratophyllum demersum HOM05D006398 ORTHO05D007983 1.8e-09 66.6 134 37.3
AT3G51500 Arabidopsis thaliana HOM05D006398 ORTHO05D007983 6.8e-09 64.7 136 46.3
Carub.0005s1788 Capsella rubella HOM05D006398 ORTHO05D007983 3.4e-08 62.4 136 44.9
AL5G31940 Arabidopsis lyrata HOM05D006398 ORTHO05D007983 4.4e-08 62.0 136 44.9
Thhalv10010838m.g Eutrema salsugineum HOM05D006398 ORTHO05D007983 4.4e-08 62.0 136 44.1
SHI11157 Sapria himalayana HOM05D006398 ORTHO05D007983 4.4e-08 62.0 52 61.5
Sp5g10740 Schrenkiella parvula HOM05D006398 ORTHO05D007983 7.6e-08 61.2 136 45.6
Cpa.g.sc178.36 Carica papaya HOM05D006398 ORTHO05D007983 9.9e-08 60.8 104 38.5
arahy.Tifrunner.gnm1.ann1.GQ5KDA Arachis hypogaea HOM05D006398 ORTHO05D007983 1.4e-06 57.0 48 58.3
CARHR161080 Cardamine hirsuta HOM05D006398 ORTHO05D007983 2.4e-06 56.2 136 43.4


User provided reference genes

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