Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0096491 Rosa chinensis HOM05D005195 ORTHO05D006088 2.4e-203 711.8 339 100.0
FvH4_1g09650 Fragaria vesca HOM05D005195 ORTHO05D006088 1.6e-149 533.1 345 78.0
FAN19G0176 Fragaria x ananassa HOM05D005195 ORTHO05D006088 1.1e-147 526.9 347 76.9
FAN26G2084 Fragaria x ananassa HOM05D005195 ORTHO05D006088 7.2e-147 524.2 347 76.7
FAN26G0153 Fragaria x ananassa HOM05D005195 ORTHO05D006088 2.3e-145 519.2 347 76.1
FAN23G0045 Fragaria x ananassa HOM05D005195 ORTHO05D006088 5.7e-144 514.6 372 71.2
Prupe.7G189700 Prunus persica HOM05D005195 ORTHO05D006088 6.4e-127 458.0 365 65.5
MD15G1225300 Malus domestica HOM05D005195 ORTHO05D006088 4.0e-121 438.7 358 65.1
MD02G1105400 Malus domestica HOM05D005195 ORTHO05D006088 3.2e-118 429.1 358 62.8
GSVIVG01014997001 Vitis vinifera HOM05D005195 ORTHO05D006088 1.2e-106 390.6 232 77.6
Ciclev10008817m.g Citrus clementina HOM05D005195 ORTHO05D006088 2.8e-106 389.4 307 64.2
Dinv25492 Davidia involucrata HOM05D005195 ORTHO05D006088 2.4e-105 386.3 292 66.8
Actinidia39605 Actinidia chinensis HOM05D005195 ORTHO05D006088 4.0e-105 385.6 220 80.9
CiPaw.03G199200 Carya illinoinensis HOM05D005195 ORTHO05D006088 8.9e-105 384.4 219 81.3
Hund08917 Selenicereus undatus HOM05D005195 ORTHO05D006088 1.5e-104 383.6 224 79.0
CANSAT56G1537 Cannabis sativa HOM05D005195 ORTHO05D006088 2.6e-104 382.9 269 69.9
BcaC09g52118 Brassica carinata HOM05D005195 ORTHO05D006088 3.4e-104 382.5 270 66.7
QL11p003443 Quercus lobata HOM05D005195 ORTHO05D006088 4.4e-104 382.1 219 80.8
THA.LOC104804446 Tarenaya hassleriana HOM05D005195 ORTHO05D006088 7.6e-104 381.3 290 64.1
Cfa002928 Carpinus fangiana HOM05D005195 ORTHO05D006088 1.3e-103 380.6 218 81.2
Sabra06G0166900 Salix brachista HOM05D005195 ORTHO05D006088 1.7e-103 380.2 278 67.6
Haze_26081 Corylus avellana HOM05D005195 ORTHO05D006088 3.8e-103 379.0 218 81.2
PGR142G1085 Punica granatum HOM05D005195 ORTHO05D006088 3.8e-103 379.0 274 69.0
TAR383G0985 Trochodendron aralioides HOM05D005195 ORTHO05D006088 3.8e-103 379.0 206 82.5
BcaNung02154 Brassica carinata HOM05D005195 ORTHO05D006088 4.9e-103 378.6 291 63.6
C07p59500 Brassica napus HOM05D005195 ORTHO05D006088 4.9e-103 378.6 291 63.6
TWI63G0336 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 4.9e-103 378.6 215 80.5
CSS0045452 Camellia sinensis var. sinensis HOM05D005195 ORTHO05D006088 6.4e-103 378.3 205 83.9
Thhalv10025620m.g Eutrema salsugineum HOM05D005195 ORTHO05D006088 8.4e-103 377.9 284 63.7
Sp7g30880 Schrenkiella parvula HOM05D005195 ORTHO05D006088 8.4e-103 377.9 284 63.7
BolC7t46394H Brassica oleracea HOM05D005195 ORTHO05D006088 1.1e-102 377.5 291 64.3
Nn6g35744 Nelumbo nucifera HOM05D005195 ORTHO05D006088 1.1e-102 377.5 227 76.2
EL10Ac8g18946 Beta vulgaris HOM05D005195 ORTHO05D006088 3.2e-102 375.9 224 76.8
Gohir.A06G082100 Gossypium hirsutum HOM05D005195 ORTHO05D006088 3.2e-102 375.9 278 67.3
Eucgr.C00758 Eucalyptus grandis HOM05D005195 ORTHO05D006088 4.2e-102 375.6 226 77.9
CAN.G88.12 Capsicum annuum HOM05D005195 ORTHO05D006088 5.4e-102 375.2 270 67.0
AL7G18430 Arabidopsis lyrata HOM05D005195 ORTHO05D006088 9.2e-102 374.4 315 60.3
Gorai.010G094600 Gossypium raimondii HOM05D005195 ORTHO05D006088 9.2e-102 374.4 272 68.0
BraA01t00489Z Brassica rapa HOM05D005195 ORTHO05D006088 1.2e-101 374.0 273 65.6
Duzib150G0538 Durio zibethinus HOM05D005195 ORTHO05D006088 1.2e-101 374.0 203 81.3
Gohir.D06G081300 Gossypium hirsutum HOM05D005195 ORTHO05D006088 1.2e-101 374.0 272 67.6
A01p05070 Brassica napus HOM05D005195 ORTHO05D006088 1.6e-101 373.6 275 65.8
PSO421G0417 Papaver somniferum HOM05D005195 ORTHO05D006088 1.6e-101 373.6 205 83.9
Potri.006G216500 Populus trichocarpa HOM05D005195 ORTHO05D006088 2.7e-101 372.9 360 55.6
Carub.0007s0732 Capsella rubella HOM05D005195 ORTHO05D006088 3.5e-101 372.5 274 65.3
Cpa.g.sc82.43 Carica papaya HOM05D005195 ORTHO05D006088 3.5e-101 372.5 274 65.3
A03p61820 Brassica napus HOM05D005195 ORTHO05D006088 1.3e-100 370.5 295 63.1
Thecc.09G067900 Theobroma cacao HOM05D005195 ORTHO05D006088 1.3e-100 370.5 205 81.0
Atru.chr7.1799 Acer truncatum HOM05D005195 ORTHO05D006088 1.7e-100 370.2 292 65.4
Duzib168G1130 Durio zibethinus HOM05D005195 ORTHO05D006088 1.7e-100 370.2 205 79.0
Nitab4.5_0000055g0120 Nicotiana tabacum HOM05D005195 ORTHO05D006088 1.7e-100 370.2 223 75.3
Manes.16G088800 Manihot esculenta HOM05D005195 ORTHO05D006088 2.3e-100 369.8 374 54.5
Aa31sc810G10 Aethionema arabicum HOM05D005195 ORTHO05D006088 3.0e-100 369.4 299 60.5
AT4G33140 Arabidopsis thaliana HOM05D005195 ORTHO05D006088 3.9e-100 369.0 273 65.6
BraA03t15220Z Brassica rapa HOM05D005195 ORTHO05D006088 5.1e-100 368.6 295 62.7
Duzib187G0988 Durio zibethinus HOM05D005195 ORTHO05D006088 1.5e-99 367.1 205 79.0
TWI34G1666 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 1.5e-99 367.1 231 73.2
Aqoxy7G00925 Aquilegia oxysepala HOM05D005195 ORTHO05D006088 1.9e-99 366.7 351 55.6
Cc00_g13790 Coffea canephora HOM05D005195 ORTHO05D006088 1.9e-99 366.7 214 77.1
Oeu010853.1 Olea europaea HOM05D005195 ORTHO05D006088 2.5e-99 366.3 220 76.8
Glyma.17G044200 Glycine max HOM05D005195 ORTHO05D006088 3.3e-99 365.9 226 76.5
Oeu010852.1 Olea europaea HOM05D005195 ORTHO05D006088 3.3e-99 365.9 220 76.4
Sopen07g006530 Solanum pennellii HOM05D005195 ORTHO05D006088 3.3e-99 365.9 285 63.5
Gorai.001G018400 Gossypium raimondii HOM05D005195 ORTHO05D006088 7.3e-99 364.8 276 64.1
Nitab4.5_0001114g0020 Nicotiana tabacum HOM05D005195 ORTHO05D006088 7.3e-99 364.8 299 60.5
C01p05540 Brassica napus HOM05D005195 ORTHO05D006088 9.6e-99 364.4 295 60.7
BolC1t00534H Brassica oleracea HOM05D005195 ORTHO05D006088 9.6e-99 364.4 295 60.7
ClCG03G014710 Citrullus lanatus HOM05D005195 ORTHO05D006088 9.6e-99 364.4 207 79.7
Lj7A694G45 Lonicera japonica HOM05D005195 ORTHO05D006088 1.2e-98 364.0 230 74.8
VMungo1215G2768 Vigna mungo HOM05D005195 ORTHO05D006088 2.1e-98 363.2 226 76.5
arahy.Tifrunner.gnm1.ann1.EYB30S Arachis hypogaea HOM05D005195 ORTHO05D006088 3.6e-98 362.5 244 72.1
Gohir.D07G017700 Gossypium hirsutum HOM05D005195 ORTHO05D006088 4.7e-98 362.1 275 63.3
Lj4g0025754 Lotus japonicus HOM05D005195 ORTHO05D006088 4.7e-98 362.1 232 73.3
Phvul.003G126200 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 6.2e-98 361.7 235 74.5
CsaV3_1G041450 Cucumis sativus L. HOM05D005195 ORTHO05D006088 8.1e-98 361.3 211 78.2
Glyma.13G115600 Glycine max HOM05D005195 ORTHO05D006088 8.1e-98 361.3 235 74.0
Gohir.A07G017900 Gossypium hirsutum HOM05D005195 ORTHO05D006088 1.1e-97 360.9 276 63.4
TPR.G12689 Trifolium pratense HOM05D005195 ORTHO05D006088 4.0e-97 359.0 281 64.1
Actinidia33513 Actinidia chinensis HOM05D000417 ORTHO05D006088 5.3e-97 358.6 224 75.9
MELO3C015557.2 Cucumis melo HOM05D005195 ORTHO05D006088 1.2e-96 357.5 205 78.5
Lj6g0001650 Lotus japonicus HOM05D005195 ORTHO05D006088 2.6e-96 356.3 205 80.0
Sed0003985 Sechium edule HOM05D005195 ORTHO05D006088 3.4e-96 355.9 331 55.6
arahy.Tifrunner.gnm1.ann1.QID06X Arachis hypogaea HOM05D005195 ORTHO05D006088 4.4e-96 355.5 244 71.3
Lalb_Chr13g0299131 Lupinus albus HOM05D005195 ORTHO05D006088 4.4e-96 355.5 285 63.2
PSO104G0051 Papaver somniferum HOM05D005195 ORTHO05D006088 4.4e-96 355.5 219 77.2
Psat4g019920 Pisum sativum HOM05D005195 ORTHO05D006088 4.4e-96 355.5 235 72.3
MSTRG.26504 Avicennia marina HOM05D005195 ORTHO05D006088 5.8e-96 355.1 220 73.6
Lalb_Chr12g0200391 Lupinus albus HOM05D005195 ORTHO05D006088 5.8e-96 355.1 285 63.2
Phvul.009G221900 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 1.3e-95 354.0 202 79.2
Lalb_Chr07g0181481 Lupinus albus HOM05D005195 ORTHO05D006088 2.2e-95 353.2 205 79.5
Ca_21349_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 4.9e-95 352.1 235 72.3
ATR0099G089 Amborella trichopoda HOM05D005195 ORTHO05D006088 1.1e-94 350.9 205 77.1
VMungo1309G1826 Vigna mungo HOM05D005195 ORTHO05D006088 2.4e-94 349.7 202 78.2
MSTRG.19420 Avicennia marina HOM05D005195 ORTHO05D006088 3.2e-94 349.4 226 72.6
SalBow6G3026 Salvia bowleyana HOM05D005195 ORTHO05D006088 4.2e-94 349.0 209 77.0
MBI19_g32876_MAGBIO Magnolia biondii HOM05D005195 ORTHO05D006088 5.4e-94 348.6 247 68.0
AUR62025326 Chenopodium quinoa HOM05D005195 ORTHO05D006088 9.3e-94 347.8 194 80.4
AUR62028337 Chenopodium quinoa HOM05D005195 ORTHO05D006088 9.3e-94 347.8 194 79.9
Medtr4g124450 Medicago truncatula HOM05D005195 ORTHO05D006088 1.2e-93 347.4 331 55.9
Glyma.09G077400 Glycine max HOM05D005195 ORTHO05D006088 2.1e-93 346.7 297 60.6
Psat1g139120 Pisum sativum HOM05D005195 ORTHO05D006088 2.7e-93 346.3 296 59.5
Sc14g0000920 Simmondsia chinensis HOM05D005195 ORTHO05D006088 6.0e-93 345.1 195 80.0
Medtr2g044900 Medicago truncatula HOM05D005195 ORTHO05D006088 2.3e-92 343.2 275 64.0
CDE05G1368 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 3.9e-92 342.4 208 75.0
Migut.J00869 Erythranthe guttata HOM05D005195 ORTHO05D006088 1.9e-91 340.1 265 64.5
Zm00001eb374160 Zea mays HOM05D005195 ORTHO05D006088 2.5e-91 339.7 217 70.0
Os06g0192900 Oryza sativa ssp. japonica HOM05D005195 ORTHO05D006088 4.8e-90 335.5 255 62.0
TPR.G25386 Trifolium pratense HOM05D005195 ORTHO05D006088 1.4e-89 334.0 272 61.0
Rhsim05G0001200 Rhododendron simsii HOM05D005195 ORTHO05D006088 2.6e-88 329.7 262 61.5
CDE07G0654 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 3.4e-88 329.3 223 66.8
unitig_578.g15872 Utricularia gibba HOM05D005195 ORTHO05D006088 4.5e-88 328.9 243 65.8
CDE06G1243 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 7.6e-88 328.2 223 66.8
HPP92_027596 Vanilla planifolia HOM05D005195 ORTHO05D006088 1.7e-87 327.0 199 75.4
HPP92_002369 Vanilla planifolia HOM05D005195 ORTHO05D006088 2.2e-87 326.6 199 75.4
SHI27969 Sapria himalayana HOM05D005195 ORTHO05D006088 6.4e-87 325.1 277 58.8
HPP92_019108 Vanilla planifolia HOM05D005195 ORTHO05D006088 3.7e-82 309.3 203 67.5
Oeu055315.1 Olea europaea HOM05D005195 ORTHO05D006088 1.4e-81 307.4 227 66.1
SEGI_21946 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 2.4e-81 306.6 219 62.1
CARHR241160 Cardamine hirsuta HOM05D005195 ORTHO05D006088 8.7e-76 288.1 162 77.2
Mapoly0181s0009 Marchantia polymorpha HOM05D005195 ORTHO05D006088 2.4e-73 280.0 200 61.0
Pp3c5_26930 Physcomitrium patens HOM05D005195 ORTHO05D006088 2.9e-71 273.1 197 61.9
Migut.L00513 Erythranthe guttata HOM05D005195 ORTHO05D006088 4.9e-71 272.3 161 73.3
Ca_02313_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 3.5e-69 266.2 160 73.8
Solyc07g017700.3 Solanum lycopersicum HOM05D005195 ORTHO05D006088 1.8e-68 263.8 150 76.7
vmacro06379 Vaccinium macrocarpon HOM05D005195 ORTHO05D006088 8.7e-68 261.5 306 51.0
Dinv42438 Davidia involucrata HOM05D005195 ORTHO05D006088 2.2e-66 256.9 220 62.3
Glyma.17G255700 Glycine max HOM05D005195 ORTHO05D006088 1.4e-65 254.2 145 78.6
DCAR_024788 Daucus carota HOM05D005195 ORTHO05D006088 4.1e-65 252.7 136 83.8
Cre16.g661550 Chlamydomonas reinhardtii HOM05D005195 ORTHO05D006088 2.8e-58 229.9 206 53.4
Peaxi162Scf00452g00117 Petunia axillaris HOM05D005195 ORTHO05D006088 7.2e-54 215.3 121 76.0
EL10Ac7g16303 Beta vulgaris HOM05D005195 ORTHO05D006088 6.7e-52 208.8 152 65.8
RcHm_v2.0_Chr2g0117071 Rosa chinensis HOM05D005195 ORTHO05D006088 2.0e-48 197.2 152 62.5
PRCOL_00003934 Prasinoderma coloniale HOM05D005195 ORTHO05D006088 4.7e-45 186.0 169 50.9
Pp3c6_3390 Physcomitrium patens HOM05D005195 ORTHO05D006088 4.2e-30 136.3 111 54.1
SEGI_31296 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 2.3e-23 114.0 83 55.4
Solyc07g017710.1 Solanum lycopersicum HOM05D005195 ORTHO05D006088 4.7e-21 106.3 82 65.9
SGA_v2.0_scaffold31G12703 Striga asiatica HOM05D005195 ORTHO05D006088 6.8e-20 102.4 79 63.3
Peaxi162Scf00452g00122 Petunia axillaris HOM05D005195 ORTHO05D006088 4.1e-17 93.2 171 39.2
PGSC0003DMG400002304 Solanum tuberosum HOM05D005195 ORTHO05D006088 7.8e-16 89.0 101 53.5
Ca_29779_v3 Cicer arietinum L. HOM05D000417 ORTHO05D000342 2.9e-15 87.0 78 60.3
Migut.L01605 Erythranthe guttata HOM05D005195 ORTHO05D006088 1.9e-14 84.3 96 50.0
COL.COLO4_21182 Corchorus olitorius HOM05D005195 ORTHO05D006088 1.2e-13 81.6 203 37.4
Zm00001eb045610 Zea mays HOM05D005195 ORTHO05D006088 6.4e-10 69.3 43 72.1
EL10Ac8g18949 Beta vulgaris HOM05D005195 ORTHO05D006088 2.0e-08 64.3 89 41.6
SEGI_31523 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 4.3e-06 56.6 77 42.9


User provided reference genes

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