Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0096321 Rosa chinensis HOM05D003681 ORTHO05D004703 2.3e-51 205.3 103 100.0
RcHm_v2.0_Chr5g0045391 Rosa chinensis HOM05D003681 ORTHO05D004703 1.9e-50 202.2 103 99.0
RcHm_v2.0_Chr2g0174171 Rosa chinensis HOM05D003681 ORTHO05D004703 2.2e-46 188.7 97 97.9
RcHm_v2.0_Chr2g0109021 Rosa chinensis HOM05D002608 ORTHO05D004703 6.4e-46 187.2 97 96.9
FvH4_6g52640 Fragaria vesca HOM05D003681 ORTHO05D004703 1.1e-45 186.4 97 96.9
FAN09G4630 Fragaria x ananassa HOM05D003681 ORTHO05D004703 1.1e-45 186.4 97 96.9
FAN14G5093 Fragaria x ananassa HOM05D003681 ORTHO05D004703 2.4e-45 185.3 96 96.9
FAN02G4174 Fragaria x ananassa HOM05D003681 ORTHO05D004703 3.2e-45 184.9 97 95.9
FAN05G4404 Fragaria x ananassa HOM05D003681 ORTHO05D004703 5.4e-45 184.1 96 96.9
Prupe.3G299500 Prunus persica HOM05D003681 ORTHO05D004703 6.0e-44 180.6 97 92.8
RcHm_v2.0_Chr5g0047251 Rosa chinensis HOM05D002608 ORTHO05D021346 5.0e-43 177.6 92 96.7
MD09G1017400 Malus domestica HOM05D003681 ORTHO05D004703 2.1e-41 172.2 92 93.5
QL07p006188 Quercus lobata HOM05D003681 ORTHO05D004703 3.7e-38 161.4 97 81.4
Haze_14813 Corylus avellana HOM05D003681 ORTHO05D004703 6.4e-38 160.6 97 84.5
Cfa007279 Carpinus fangiana HOM05D003681 ORTHO05D004703 8.3e-38 160.2 97 84.5
QL02p072923 Quercus lobata HOM05D003681 ORTHO05D004703 1.4e-37 159.5 97 80.4
CANSAT64G2654 Cannabis sativa HOM05D003681 ORTHO05D004703 3.2e-37 158.3 97 82.5
TWI12G0555 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 7.0e-37 157.1 97 77.3
CiPaw.04G033000 Carya illinoinensis HOM05D003681 ORTHO05D004703 9.2e-37 156.8 97 79.4
MD17G1018200 Malus domestica HOM05D003681 ORTHO05D004703 1.6e-36 156.0 92 89.1
Thecc.04G027500 Theobroma cacao HOM05D003681 ORTHO05D004703 4.6e-36 154.5 96 80.2
TAR371G0788 Trochodendron aralioides HOM05D003681 ORTHO05D004703 4.6e-36 154.5 95 78.9
Cpa.g.sc130.41 Carica papaya HOM05D003681 ORTHO05D004703 6.0e-36 154.1 97 79.4
PGR142G3554 Punica granatum HOM05D003681 ORTHO05D004703 6.0e-36 154.1 97 79.4
GSVIVG01001851001 Vitis vinifera HOM05D003681 ORTHO05D004703 6.0e-36 154.1 96 79.2
TAR374G1355 Trochodendron aralioides HOM05D003681 ORTHO05D004703 1.0e-35 153.3 96 77.1
CiPaw.03G050400 Carya illinoinensis HOM05D003681 ORTHO05D004703 1.3e-35 152.9 97 77.3
Dinv25694 Davidia involucrata HOM05D003681 ORTHO05D004703 1.3e-35 152.9 96 77.1
MBI11_g11079_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 1.3e-35 152.9 96 76.0
TAR374G1530 Trochodendron aralioides HOM05D003681 ORTHO05D004703 1.3e-35 152.9 96 76.0
Manes.17G107300 Manihot esculenta HOM05D003681 ORTHO05D004703 6.6e-35 150.6 97 76.3
Dinv33384 Davidia involucrata HOM05D003681 ORTHO05D004703 8.6e-35 150.2 96 76.0
Gohir.D09G033600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.9e-34 149.1 96 76.0
Gorai.006G038600 Gossypium raimondii HOM05D003681 ORTHO05D004703 1.9e-34 149.1 96 76.0
Potri.001G337600 Populus trichocarpa HOM05D003681 ORTHO05D004703 1.9e-34 149.1 95 80.0
Atru.chr6.2486 Acer truncatum HOM05D003681 ORTHO05D004703 2.5e-34 148.7 90 80.0
TAR622G1195 Trochodendron aralioides HOM05D003681 ORTHO05D004703 2.5e-34 148.7 96 72.9
COL.COLO4_29274 Corchorus olitorius HOM05D003681 ORTHO05D004703 3.3e-34 148.3 92 79.3
TWI36G0744 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 3.3e-34 148.3 97 74.2
Aqoxy3G01435 Aquilegia oxysepala HOM05D003681 ORTHO05D004703 1.2e-33 146.4 95 71.6
ClCG05G013220 Citrullus lanatus HOM05D003681 ORTHO05D004703 1.2e-33 146.4 96 75.0
Ciclev10014307m.g Citrus clementina HOM05D003681 ORTHO05D004703 1.2e-33 146.4 90 78.9
CsaV3_3G027310 Cucumis sativus L. HOM05D003681 ORTHO05D004703 1.2e-33 146.4 98 75.5
Eucgr.I01693 Eucalyptus grandis HOM05D003681 ORTHO05D004703 1.2e-33 146.4 95 77.9
Lj7A605G77 Lonicera japonica HOM05D003681 ORTHO05D004703 1.2e-33 146.4 96 71.9
Ca_04403_v3 Cicer arietinum L. HOM05D003681 ORTHO05D004703 1.6e-33 146.0 97 75.3
Glyma.19G077600 Glycine max HOM05D003681 ORTHO05D004703 1.6e-33 146.0 97 75.3
Gohir.D11G069300 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.6e-33 146.0 96 76.0
Manes.15G156300 Manihot esculenta HOM05D003681 ORTHO05D004703 1.6e-33 146.0 97 75.3
Glyma.05G073400 Glycine max HOM05D003681 ORTHO05D004703 2.1e-33 145.6 97 75.3
Sabra16G0218500 Salix brachista HOM05D003681 ORTHO05D004703 2.1e-33 145.6 95 77.9
MELO3C014854.2 Cucumis melo HOM05D003681 ORTHO05D004703 2.8e-33 145.2 88 78.4
Medtr6g022730 Medicago truncatula HOM05D003681 ORTHO05D004703 2.8e-33 145.2 93 78.5
Nn4g22444 Nelumbo nucifera HOM05D003681 ORTHO05D004703 2.8e-33 145.2 96 70.8
THA.LOC104805345 Tarenaya hassleriana HOM05D003681 ORTHO05D004703 2.8e-33 145.2 95 75.8
Phvul.004G057300 Phaseolus vulgaris HOM05D003681 ORTHO05D004703 3.6e-33 144.8 88 80.7
Gohir.A09G033400 Gossypium hirsutum HOM05D003681 ORTHO05D004703 4.7e-33 144.4 96 74.0
Gorai.007G074100 Gossypium raimondii HOM05D003681 ORTHO05D004703 4.7e-33 144.4 96 75.0
Sed0021158 Sechium edule HOM05D003681 ORTHO05D004703 4.7e-33 144.4 96 72.9
Gohir.A11G065000 Gossypium hirsutum HOM05D003681 ORTHO05D004703 8.1e-33 143.7 96 76.0
Peaxi162Scf00080g01724 Petunia axillaris HOM05D003681 ORTHO05D004703 8.1e-33 143.7 95 70.5
Psat1g082400 Pisum sativum HOM05D003681 ORTHO05D004703 8.1e-33 143.7 96 74.0
Potri.001G337700 Populus trichocarpa HOM05D003681 ORTHO05D004703 8.1e-33 143.7 95 75.8
Sabra16G0218400 Salix brachista HOM05D003681 ORTHO05D004703 8.1e-33 143.7 95 75.8
Lalb_Chr21g0317601 Lupinus albus HOM05D003681 ORTHO05D004703 1.1e-32 143.3 97 73.2
PGSC0003DMG400006971 Solanum tuberosum HOM05D003681 ORTHO05D004703 1.1e-32 143.3 95 69.5
Duzib187G0106 Durio zibethinus HOM05D003681 ORTHO05D004703 1.8e-32 142.5 96 75.0
Nitab4.5_0008718g0020 Nicotiana tabacum HOM05D003681 ORTHO05D004703 1.8e-32 142.5 95 68.4
ATR0824G011 Amborella trichopoda HOM05D003681 ORTHO05D004703 2.3e-32 142.1 96 72.9
Rhsim08G0046300 Rhododendron simsii HOM05D003681 ORTHO05D004703 2.3e-32 142.1 94 74.5
RcHm_v2.0_Chr6g0248701 Rosa chinensis HOM05D002608 ORTHO05D013040 3.1e-32 141.7 71 98.6
Actinidia18423 Actinidia chinensis HOM05D003681 ORTHO05D004703 4.0e-32 141.4 90 75.6
Hund06716 Selenicereus undatus HOM05D003681 ORTHO05D004703 4.0e-32 141.4 92 76.1
Sopen02g017120 Solanum pennellii HOM05D003681 ORTHO05D004703 4.0e-32 141.4 95 69.5
Nitab4.5_0000040g0490 Nicotiana tabacum HOM05D003681 ORTHO05D004703 5.2e-32 141.0 95 67.4
PSO017G2495 Papaver somniferum HOM05D003681 ORTHO05D004703 5.2e-32 141.0 90 73.3
Solyc02g093810.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 5.2e-32 141.0 92 71.7
CSS0025950 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 6.8e-32 140.6 83 80.7
CAN.G473.58 Capsicum annuum HOM05D003681 ORTHO05D004703 6.8e-32 140.6 92 71.7
VMungo0464G1197 Vigna mungo HOM05D003681 ORTHO05D004703 6.8e-32 140.6 88 78.4
PGSC0003DMG400020227 Solanum tuberosum HOM05D003681 ORTHO05D004703 8.9e-32 140.2 92 71.7
arahy.Tifrunner.gnm1.ann1.0QF2GW Arachis hypogaea HOM05D003681 ORTHO05D004703 1.2e-31 139.8 97 73.2
CAN.G1057.25 Capsicum annuum HOM05D003681 ORTHO05D004703 1.5e-31 139.4 95 67.4
A04p13760 Brassica napus HOM05D003681 ORTHO05D004703 2.0e-31 139.0 90 74.4
BraA04t17035Z Brassica rapa HOM05D003681 ORTHO05D004703 2.0e-31 139.0 90 74.4
BcaB02g07929 Brassica carinata HOM05D003681 ORTHO05D004703 3.4e-31 138.3 90 75.6
ECA238G4183 Erigeron canadensis HOM05D003681 ORTHO05D004703 3.4e-31 138.3 96 68.8
BcaB06g27549 Brassica carinata HOM05D003681 ORTHO05D004703 4.4e-31 137.9 90 73.3
C04p47540 Brassica napus HOM05D003681 ORTHO05D004703 4.4e-31 137.9 90 73.3
BolC4t26356H Brassica oleracea HOM05D003681 ORTHO05D004703 4.4e-31 137.9 90 73.3
Gohir.D10G085200 Gossypium hirsutum HOM05D003681 ORTHO05D004703 4.4e-31 137.9 89 76.4
Gorai.011G093100 Gossypium raimondii HOM05D003681 ORTHO05D004703 4.4e-31 137.9 89 76.4
Oeu050433.3 Olea europaea HOM05D003681 ORTHO05D004703 4.4e-31 137.9 96 70.8
Sed0015235 Sechium edule HOM05D003681 ORTHO05D004703 5.8e-31 137.5 96 71.9
A07p20510 Brassica napus HOM05D003681 ORTHO05D004703 7.5e-31 137.1 90 74.4
BolC6t37131H Brassica oleracea HOM05D003681 ORTHO05D004703 7.5e-31 137.1 90 74.4
BraA07t29742Z Brassica rapa HOM05D003681 ORTHO05D004703 7.5e-31 137.1 90 74.4
Lalb_Chr02g0157941 Lupinus albus HOM05D003681 ORTHO05D004703 7.5e-31 137.1 96 71.9
Solyc02g067990.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 7.5e-31 137.1 95 67.4
PSO478G5006 Papaver somniferum HOM05D003681 ORTHO05D004703 9.9e-31 136.7 90 71.1
Sopen02g038450 Solanum pennellii HOM05D003681 ORTHO05D004703 9.9e-31 136.7 92 70.7
CSS0007013 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 1.3e-30 136.3 88 73.9
CSS0035050 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 1.3e-30 136.3 88 73.9
Thhalv10027657m.g Eutrema salsugineum HOM05D003681 ORTHO05D004703 1.3e-30 136.3 88 73.9
C06p19360 Brassica napus HOM05D003681 ORTHO05D004703 1.7e-30 136.0 90 73.3
Carub.0007s3474 Capsella rubella HOM05D003681 ORTHO05D004703 2.2e-30 135.6 95 67.4
Aa31LG9G900 Aethionema arabicum HOM05D003681 ORTHO05D004703 2.9e-30 135.2 88 75.0
Sp7g01150 Schrenkiella parvula HOM05D003681 ORTHO05D004703 2.9e-30 135.2 90 72.2
vmacro18313 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 2.9e-30 135.2 95 70.5
Actinidia16950 Actinidia chinensis HOM05D003681 ORTHO05D004703 3.7e-30 134.8 90 73.3
AL7G49000 Arabidopsis lyrata HOM05D003681 ORTHO05D004703 3.7e-30 134.8 95 67.4
AT5G40740 Arabidopsis thaliana HOM05D003681 ORTHO05D004703 3.7e-30 134.8 95 67.4
Lj2g0006828 Lotus japonicus HOM05D003681 ORTHO05D004703 3.7e-30 134.8 88 77.3
BcaC08g44481 Brassica carinata HOM05D003681 ORTHO05D004703 4.9e-30 134.4 90 72.2
CARHR213770 Cardamine hirsuta HOM05D003681 ORTHO05D004703 4.9e-30 134.4 95 67.4
Gohir.A10G160600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 6.4e-30 134.0 88 75.0
Rhsim10G0011100 Rhododendron simsii HOM05D003681 ORTHO05D004703 6.4e-30 134.0 88 71.6
vmacro05923 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 6.4e-30 134.0 85 72.9
HanXRQChr07g0199161 Helianthus annuus HOM05D003681 ORTHO05D004703 1.9e-29 132.5 99 66.7
Nitab4.5_0001863g0130 Nicotiana tabacum HOM05D003681 ORTHO05D004703 3.2e-29 131.7 97 63.9
Lj1g0019639 Lotus japonicus HOM05D003681 ORTHO05D004703 9.2e-29 130.2 86 76.7
HPP92_006269 Vanilla planifolia HOM05D003681 ORTHO05D004703 9.2e-29 130.2 96 67.7
Cc07_g00400 Coffea canephora HOM05D003681 ORTHO05D004703 1.2e-28 129.8 95 69.5
Peaxi162Scf00420g00351 Petunia axillaris HOM05D003681 ORTHO05D004703 1.6e-28 129.4 88 67.0
Hma1.2p1_0279F.1_g112260 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 2.1e-28 129.0 95 66.3
Sc03g0006880 Simmondsia chinensis HOM05D003681 ORTHO05D004703 2.1e-28 129.0 94 69.1
Sc03g0007020 Simmondsia chinensis HOM05D003681 ORTHO05D004703 2.1e-28 129.0 94 69.1
SGA_v2.0_scaffold135G34941 Striga asiatica HOM05D003681 ORTHO05D004703 3.5e-28 128.3 87 71.3
AUR62036017 Chenopodium quinoa HOM05D003681 ORTHO05D004703 6.0e-28 127.5 96 68.8
SGA_v2.0_scaffold18G08242 Striga asiatica HOM05D003681 ORTHO05D004703 6.0e-28 127.5 85 72.9
Actinidia36165 Actinidia chinensis HOM05D003681 ORTHO05D004703 1.3e-27 126.3 85 71.8
AUR62035509 Chenopodium quinoa HOM05D003681 ORTHO05D004703 1.7e-27 125.9 96 68.8
Zm00001eb235200 Zea mays HOM05D003681 ORTHO05D004703 1.7e-27 125.9 86 70.9
SalBow1G2960 Salvia bowleyana HOM05D003681 ORTHO05D004703 3.9e-27 124.8 85 69.4
SalBow1G7977 Salvia bowleyana HOM05D003681 ORTHO05D004703 3.9e-27 124.8 85 69.4
CDE04G2610 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 6.6e-27 124.0 96 60.4
QL09p045970 Quercus lobata HOM05D003681 ORTHO05D004703 1.1e-26 123.2 80 73.8
Migut.H00059 Erythranthe guttata HOM05D003681 ORTHO05D004703 1.9e-26 122.5 96 62.5
EL10Ac4g08610 Beta vulgaris HOM05D003681 ORTHO05D004703 3.3e-26 121.7 96 65.6
DCAR_011289 Daucus carota HOM05D003681 ORTHO05D004703 4.3e-26 121.3 88 63.6
Os02g0329300 Oryza sativa ssp. japonica HOM05D003681 ORTHO05D004703 4.3e-26 121.3 87 70.1
unitig_21.g20482 Utricularia gibba HOM05D003681 ORTHO05D004703 5.6e-26 120.9 90 66.7
MSTRG.3111 Avicennia marina HOM05D003681 ORTHO05D004703 7.3e-26 120.6 96 62.5
CDE07G0234 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 1.4e-24 116.3 98 61.2
Lsat_1_v5_gn_3_79520 Lactuca sativa HOM05D003681 ORTHO05D004703 1.8e-24 115.9 80 68.8
unitig_744.g24365 Utricularia gibba HOM05D003681 ORTHO05D004703 1.8e-24 115.9 96 59.4
SEGI_13919 Sequoiadendron giganteum HOM05D003681 ORTHO05D004703 3.1e-24 115.2 88 61.4
Oeu058755.3 Olea europaea HOM05D003681 ORTHO05D004703 1.5e-23 112.8 111 55.9
Mapoly0032s0042 Marchantia polymorpha HOM05D003681 ORTHO05D004703 6.6e-19 97.4 87 54.0
AagrBONN_evm.TU.Sc2ySwM_228.437 Anthoceros agrestis HOM05D003681 ORTHO05D004703 1.6e-17 92.8 93 50.5
Lsat_1_v5_gn_2_93641 Lactuca sativa HOM05D003681 ORTHO05D004703 3.6e-17 91.7 85 56.5
Pp3c3_25790 Physcomitrium patens HOM05D003681 ORTHO05D004703 3.4e-15 85.1 85 47.1
Pp3c13_14720 Physcomitrium patens HOM05D003681 ORTHO05D004703 5.8e-15 84.3 76 50.0
Pp3c13_14730 Physcomitrium patens HOM05D003681 ORTHO05D004703 5.8e-15 84.3 76 50.0
Pp3c4_18170 Physcomitrium patens HOM05D003681 ORTHO05D004703 1.3e-14 83.2 71 53.5
SMO367G0854 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 4.6e-12 74.7 76 47.4
TPR.G36528 Trifolium pratense HOM05D003681 ORTHO05D004703 2.3e-11 72.4 53 64.2
TAR629G3339 Trochodendron aralioides HOM05D003681 ORTHO05D030546 1.1e-10 70.1 50 68.0
MBI06_g35146_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 9.6e-10 67.0 43 76.7
CBR_g66670 Chara braunii HOM05D003681 ORTHO05D004703 1.5e-07 59.7 67 41.8
VMungo1127G0394 Vigna mungo HOM05D003681 ORTHO05D004703 4.5e-07 58.2 38 71.1
SHI03860 Sapria himalayana HOM05D003681 ORTHO05D004703 5.8e-07 57.8 49 53.1


User provided reference genes

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