Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0096161 Rosa chinensis HOM05D004589 ORTHO05D005848 1.2e-24 115.5 53 100.0
FvH4_2g28290 Fragaria vesca HOM05D004589 ORTHO05D005848 2.7e-16 87.8 47 85.1
FAN15G2875 Fragaria x ananassa HOM05D004589 ORTHO05D005848 2.7e-16 87.8 47 85.1
FAN24G2656 Fragaria x ananassa HOM05D004589 ORTHO05D005848 2.7e-16 87.8 47 85.1
FAN27G1181 Fragaria x ananassa HOM05D004589 ORTHO05D005848 2.7e-16 87.8 47 85.1
RcHm_v2.0_Chr6g0297201 Rosa chinensis HOM05D004589 ORTHO05D005848 6.0e-16 86.7 47 83.0
FAN20G1713 Fragaria x ananassa HOM05D004589 ORTHO05D005848 1.3e-15 85.5 47 83.0
MD15G1131100 Malus domestica HOM05D004589 ORTHO05D005848 2.3e-15 84.7 47 80.9
TPR.G38939 Trifolium pratense HOM05D004589 ORTHO05D005848 3.0e-15 84.3 47 80.9
Medtr1g012980 Medicago truncatula HOM05D004589 ORTHO05D005848 5.1e-15 83.6 47 78.7
Prupe.1G486400 Prunus persica HOM05D004589 ORTHO05D005848 5.1e-15 83.6 47 78.7
CiPaw.08G008300 Carya illinoinensis HOM05D004589 ORTHO05D005848 6.7e-15 83.2 52 71.2
Glyma.14G112200 Glycine max HOM05D004589 ORTHO05D005848 6.7e-15 83.2 47 78.7
Glyma.17G215700 Glycine max HOM05D004589 ORTHO05D005848 6.7e-15 83.2 47 78.7
Psat6g028520 Pisum sativum HOM05D004589 ORTHO05D005848 6.7e-15 83.2 51 72.5
VMungo0647G1846 Vigna mungo HOM05D004589 ORTHO05D005848 6.7e-15 83.2 47 78.7
Actinidia14103 Actinidia chinensis HOM05D004589 ORTHO05D005848 1.1e-14 82.4 45 80.0
Aqoxy7G03529 Aquilegia oxysepala HOM05D004589 ORTHO05D005848 1.1e-14 82.4 47 76.6
Cc08_g00190 Coffea canephora HOM05D004589 ORTHO05D005848 1.1e-14 82.4 47 76.6
Lj8A732G29 Lonicera japonica HOM05D004589 ORTHO05D005848 1.1e-14 82.4 45 80.0
Phvul.001G047300 Phaseolus vulgaris HOM05D004589 ORTHO05D005848 1.1e-14 82.4 47 76.6
Aa31LG3G16090 Aethionema arabicum HOM05D004589 ORTHO05D005848 1.5e-14 82.0 47 76.6
EL10Ac2g04152 Beta vulgaris HOM05D004589 ORTHO05D005848 1.5e-14 82.0 45 80.0
AUR62012448 Chenopodium quinoa HOM05D004589 ORTHO05D005848 1.5e-14 82.0 45 80.0
AUR62031571 Chenopodium quinoa HOM05D004589 ORTHO05D005848 1.5e-14 82.0 45 80.0
Ca_13043_v3 Cicer arietinum L. HOM05D004589 ORTHO05D005848 1.5e-14 82.0 47 76.6
DCAR_021911 Daucus carota HOM05D004589 ORTHO05D005848 1.5e-14 82.0 47 76.6
Dinv03411 Davidia involucrata HOM05D004589 ORTHO05D005848 1.5e-14 82.0 47 76.6
Lj5g0022357 Lotus japonicus HOM05D004589 ORTHO05D005848 1.5e-14 82.0 47 76.6
Nn2g12251 Nelumbo nucifera HOM05D004589 ORTHO05D005848 1.5e-14 82.0 47 76.6
Sc23g0006530 Simmondsia chinensis HOM05D004589 ORTHO05D005848 1.5e-14 82.0 45 80.0
GSVIVG01035919001 Vitis vinifera HOM05D004589 ORTHO05D005848 1.5e-14 82.0 47 76.6
Manes.16G126200 Manihot esculenta HOM05D004589 ORTHO05D005848 1.9e-14 81.6 47 76.6
PSO210G3160 Papaver somniferum HOM05D004589 ORTHO05D005848 1.9e-14 81.6 45 77.8
Actinidia23085 Actinidia chinensis HOM05D004589 ORTHO05D005848 2.5e-14 81.3 45 77.8
arahy.Tifrunner.gnm1.ann1.JQP3NY Arachis hypogaea HOM05D004589 ORTHO05D005848 2.5e-14 81.3 47 76.6
arahy.Tifrunner.gnm1.ann1.PKKG09 Arachis hypogaea HOM05D004589 ORTHO05D005848 2.5e-14 81.3 47 76.6
CSS0038938 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 2.5e-14 81.3 45 77.8
Nn8g39722 Nelumbo nucifera HOM05D004589 ORTHO05D005848 2.5e-14 81.3 47 74.5
Nitab4.5_0002503g0050 Nicotiana tabacum HOM05D004589 ORTHO05D005848 2.5e-14 81.3 47 74.5
Nitab4.5_0003811g0060 Nicotiana tabacum HOM05D004589 ORTHO05D005848 2.5e-14 81.3 47 74.5
PGR044G0530 Punica granatum HOM05D004589 ORTHO05D005848 2.5e-14 81.3 45 77.8
RhsimUnG0052600 Rhododendron simsii HOM05D004589 ORTHO05D005848 2.5e-14 81.3 45 77.8
RhsimUnG0165300 Rhododendron simsii HOM05D004589 ORTHO05D005848 2.5e-14 81.3 45 77.8
Sed0004204 Sechium edule HOM05D004589 ORTHO05D005848 2.5e-14 81.3 47 74.5
Solyc06g065840.3 Solanum lycopersicum HOM05D004589 ORTHO05D005848 2.5e-14 81.3 47 74.5
Sopen06g024330 Solanum pennellii HOM05D004589 ORTHO05D005848 2.5e-14 81.3 47 74.5
Cpa.g.sc187.29 Carica papaya HOM05D004589 ORTHO05D005848 3.3e-14 80.9 45 77.8
Manes.03G011700 Manihot esculenta HOM05D004589 ORTHO05D005848 3.3e-14 80.9 47 76.6
Peaxi162Scf00430g00220 Petunia axillaris HOM05D004589 ORTHO05D005848 3.3e-14 80.9 47 74.5
Potri.018G022500 Populus trichocarpa HOM05D004589 ORTHO05D005848 3.3e-14 80.9 47 76.6
TWI63G0229 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 3.3e-14 80.9 45 75.6
Cfa013100 Carpinus fangiana HOM05D004589 ORTHO05D005848 4.3e-14 80.5 45 75.6
Ciclev10007276m.g Citrus clementina HOM05D004589 ORTHO05D005848 4.3e-14 80.5 50 72.0
Haze_21457 Corylus avellana HOM05D004589 ORTHO05D005848 4.3e-14 80.5 45 75.6
Oeu056766.2 Olea europaea HOM05D004589 ORTHO05D005848 4.3e-14 80.5 47 74.5
ClCG05G016580 Citrullus lanatus HOM05D004589 ORTHO05D005848 5.6e-14 80.1 47 72.3
MELO3C016987.2 Cucumis melo HOM05D004589 ORTHO05D005848 5.6e-14 80.1 47 72.3
CsaV3_4G036860 Cucumis sativus L. HOM05D004589 ORTHO05D005848 5.6e-14 80.1 47 72.3
SGA_v2.0_scaffold85G26586 Striga asiatica HOM05D004589 ORTHO05D005848 5.6e-14 80.1 47 74.5
CANSAT11G1771 Cannabis sativa HOM05D004589 ORTHO05D005848 7.4e-14 79.7 47 76.6
CAN.G199.72 Capsicum annuum HOM05D004589 ORTHO05D005848 7.4e-14 79.7 47 72.3
Lalb_Chr11g0075481 Lupinus albus HOM05D004589 ORTHO05D005848 7.4e-14 79.7 47 74.5
TAR383G0245 Trochodendron aralioides HOM05D004589 ORTHO05D005848 7.4e-14 79.7 45 75.6
Ah.16g104820 Amaranthus hybridus HOM05D004589 ORTHO05D005848 9.6e-14 79.3 45 77.8
COL.COLO4_18916 Corchorus olitorius HOM05D004589 ORTHO05D005848 9.6e-14 79.3 45 75.6
Migut.E01823 Erythranthe guttata HOM05D004589 ORTHO05D005848 9.6e-14 79.3 45 75.6
Eucgr.C02726 Eucalyptus grandis HOM05D004589 ORTHO05D005848 9.6e-14 79.3 45 75.6
ECA246G2532 Erigeron canadensis HOM05D004589 ORTHO05D005848 1.3e-13 79.0 45 73.3
Gohir.A07G030400 Gossypium hirsutum HOM05D004589 ORTHO05D005848 1.3e-13 79.0 45 75.6
Gohir.D07G034300 Gossypium hirsutum HOM05D004589 ORTHO05D005848 1.3e-13 79.0 45 75.6
Gorai.001G035900 Gossypium raimondii HOM05D004589 ORTHO05D005848 1.3e-13 79.0 45 75.6
THA.LOC104799036 Tarenaya hassleriana HOM05D004589 ORTHO05D005848 1.3e-13 79.0 45 75.6
Lsat_1_v5_gn_6_115440 Lactuca sativa HOM05D004589 ORTHO05D005848 1.6e-13 78.6 44 75.0
Potri.006G259500 Populus trichocarpa HOM05D004589 ORTHO05D005848 1.6e-13 78.6 47 72.3
MSTRG.1735 Avicennia marina HOM05D004589 ORTHO05D005848 2.1e-13 78.2 43 76.7
Duzib150G1268 Durio zibethinus HOM05D004589 ORTHO05D005848 2.1e-13 78.2 45 73.3
Gohir.A06G100000 Gossypium hirsutum HOM05D004589 ORTHO05D005848 2.1e-13 78.2 45 73.3
Gohir.D06G102200 Gossypium hirsutum HOM05D004589 ORTHO05D005848 2.1e-13 78.2 45 73.3
Gorai.010G117200 Gossypium raimondii HOM05D004589 ORTHO05D005848 2.1e-13 78.2 45 73.3
Thecc.09G019500 Theobroma cacao HOM05D004589 ORTHO05D005848 2.1e-13 78.2 45 73.3
Zm00001eb078140 Zea mays HOM05D004589 ORTHO05D005848 2.8e-13 77.8 47 70.2
AL6G21660 Arabidopsis lyrata HOM05D004589 ORTHO05D005848 3.7e-13 77.4 45 75.6
AT5G11040 Arabidopsis thaliana HOM05D004589 ORTHO05D005848 3.7e-13 77.4 45 75.6
BcaC04g19264 Brassica carinata HOM05D004589 ORTHO05D005848 3.7e-13 77.4 45 75.6
A10p26640 Brassica napus HOM05D004589 ORTHO05D005848 3.7e-13 77.4 45 75.6
C09p65810 Brassica napus HOM05D004589 ORTHO05D005848 3.7e-13 77.4 45 75.6
BolC9t59402H Brassica oleracea HOM05D004589 ORTHO05D005848 3.7e-13 77.4 45 75.6
BraA10t44722Z Brassica rapa HOM05D004589 ORTHO05D005848 3.7e-13 77.4 45 75.6
Carub.0006s0955 Capsella rubella HOM05D004589 ORTHO05D005848 3.7e-13 77.4 45 75.6
CARHR202250 Cardamine hirsuta HOM05D004589 ORTHO05D005848 3.7e-13 77.4 45 75.6
Thhalv10012483m.g Eutrema salsugineum HOM05D004589 ORTHO05D005848 3.7e-13 77.4 45 75.6
Sp6g32450 Schrenkiella parvula HOM05D004589 ORTHO05D005848 3.7e-13 77.4 45 75.6
Atru.chr7.2502 Acer truncatum HOM05D004589 ORTHO05D005848 4.8e-13 77.0 45 73.3
HanXRQChr01g0030641 Helianthus annuus HOM05D004589 ORTHO05D005848 4.8e-13 77.0 43 74.4
HanXRQChr16g0511131 Helianthus annuus HOM05D004589 ORTHO05D005848 6.2e-13 76.6 45 71.1
HPP92_024789 Vanilla planifolia HOM05D004589 ORTHO05D005848 6.2e-13 76.6 47 68.1
Os04g0502200 Oryza sativa ssp. japonica HOM05D004589 ORTHO05D005848 8.1e-13 76.3 47 68.1
SEGI_04045 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 1.1e-12 75.9 47 68.1
Hma1.2p1_0167F.1_g073630 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 1.4e-12 75.5 45 73.3
HPP92_020312 Vanilla planifolia HOM05D004589 ORTHO05D005848 1.4e-12 75.5 45 71.1
Zm00001eb426000 Zea mays HOM05D004589 ORTHO05D005848 1.8e-12 75.1 45 71.1
ATR0629G049 Amborella trichopoda HOM05D004589 ORTHO05D005848 2.4e-12 74.7 45 71.1
CDE05G2463 Ceratophyllum demersum HOM05D004589 ORTHO05D005848 4.0e-12 73.9 47 68.1
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 4.0e-12 73.9 43 69.8
Lsat_1_v5_gn_1_43861 Lactuca sativa HOM05D004589 ORTHO05D005848 5.3e-12 73.6 43 72.1
Pp3c22_21520 Physcomitrium patens HOM05D004589 ORTHO05D005848 5.3e-12 73.6 51 60.8
AagrBONN_evm.TU.Sc2ySwM_368.2742 Anthoceros agrestis HOM05D004589 ORTHO05D005848 1.2e-11 72.4 51 60.8
unitig_32.g11112 Utricularia gibba HOM05D004589 ORTHO05D005848 1.2e-11 72.4 45 68.9
Pp3c19_10170 Physcomitrium patens HOM05D004589 ORTHO05D005848 1.5e-11 72.0 51 58.8
QL02p020149 Quercus lobata HOM05D004589 ORTHO05D005848 1.5e-11 72.0 45 66.7
Mapoly0001s0490 Marchantia polymorpha HOM05D004589 ORTHO05D005848 2.6e-11 71.2 52 57.7
CBR_g36903 Chara braunii HOM05D004589 ORTHO05D005848 4.5e-11 70.5 50 62.0
vmacro22576 Vaccinium macrocarpon HOM05D004589 ORTHO05D005848 4.9e-10 67.0 39 76.9
SMO199G0047 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 3.5e-08 60.8 47 57.4
SMO361G0208 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 3.5e-08 60.8 47 57.4
SMO364G0672 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.0e-07 59.3 47 46.8
SMO361G0808 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 2.5e-06 54.7 47 53.2


User provided reference genes

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