Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0096141 Rosa chinensis HOM05D003653 ORTHO05D004249 6.1e-83 310.8 165 100.0
FAN26G0928 Fragaria x ananassa HOM05D003653 ORTHO05D004249 1.4e-71 273.1 147 96.6
RcHm_v2.0_Chr2g0096121 Rosa chinensis HOM05D003653 ORTHO05D004249 2.4e-71 272.3 146 98.6
FvH4_1g09540 Fragaria vesca HOM05D003653 ORTHO05D004249 1.2e-70 270.0 146 97.9
FAN19G0402 Fragaria x ananassa HOM05D003653 ORTHO05D004249 1.2e-70 270.0 146 97.9
FAN23G3130 Fragaria x ananassa HOM05D003653 ORTHO05D004249 1.2e-70 270.0 146 97.9
FAN28G1145 Fragaria x ananassa HOM05D003653 ORTHO05D004249 2.7e-70 268.9 146 97.3
FAN26G2747 Fragaria x ananassa HOM05D003653 ORTHO05D004249 3.5e-70 268.5 146 96.6
Prupe.7G190900 Prunus persica HOM05D003653 ORTHO05D004249 1.5e-68 263.1 146 95.2
RcHm_v2.0_Chr2g0096281 Rosa chinensis HOM05D003653 ORTHO05D004249 5.6e-68 261.2 146 95.2
MD15G1224400 Malus domestica HOM05D003653 ORTHO05D004249 2.1e-67 259.2 146 93.2
Atru.chr7.1784 Acer truncatum HOM05D003653 ORTHO05D004249 2.8e-67 258.8 146 92.5
MD02G1104000 Malus domestica HOM05D003653 ORTHO05D004249 8.0e-67 257.3 146 92.5
Thecc.09G069200 Theobroma cacao HOM05D003653 ORTHO05D004249 6.8e-66 254.2 146 89.7
QL02p096254 Quercus lobata HOM05D003653 ORTHO05D004249 2.0e-65 252.7 146 89.7
QL02p096361 Quercus lobata HOM05D003653 ORTHO05D004249 3.4e-65 251.9 146 89.7
Gorai.010G095200 Gossypium raimondii HOM05D003653 ORTHO05D004249 1.7e-64 249.6 146 87.7
COL.COLO4_21195 Corchorus olitorius HOM05D003653 ORTHO05D004249 2.2e-64 249.2 146 87.7
GSVIVG01015003001 Vitis vinifera HOM05D003653 ORTHO05D004249 2.2e-64 249.2 146 87.0
Ciclev10007512m.g Citrus clementina HOM05D003653 ORTHO05D004249 2.9e-64 248.8 146 88.4
Gohir.A06G084400 Gossypium hirsutum HOM05D003653 ORTHO05D004249 2.9e-64 248.8 146 88.4
CiPaw.07G188300 Carya illinoinensis HOM05D003653 ORTHO05D004249 3.7e-64 248.4 146 88.4
Cfa000655 Carpinus fangiana HOM05D003653 ORTHO05D004249 4.9e-64 248.1 146 89.0
Gohir.D06G081700 Gossypium hirsutum HOM05D003653 ORTHO05D004249 4.9e-64 248.1 146 87.0
TAR626G0857 Trochodendron aralioides HOM05D003653 ORTHO05D004249 4.9e-64 248.1 146 88.4
MSTRG.26501 Avicennia marina HOM05D003653 ORTHO05D004249 6.4e-64 247.7 146 88.4
Potri.010G138900 Populus trichocarpa HOM05D003653 ORTHO05D004249 8.3e-64 247.3 146 86.3
Duzib187G0285 Durio zibethinus HOM05D003653 ORTHO05D004249 1.8e-63 246.1 146 87.7
Manes.03G045400 Manihot esculenta HOM05D003653 ORTHO05D004249 4.1e-63 245.0 146 86.3
Manes.16G089600 Manihot esculenta HOM05D003653 ORTHO05D004249 4.1e-63 245.0 146 85.6
Gohir.A13G188800 Gossypium hirsutum HOM05D003653 ORTHO05D004249 7.0e-63 244.2 146 84.9
Lj6C86G4 Lonicera japonica HOM05D003653 ORTHO05D004249 7.0e-63 244.2 148 87.2
Sabra10G0107200 Salix brachista HOM05D003653 ORTHO05D004249 7.0e-63 244.2 146 84.9
TWI32G0371 Tripterygium wilfordii HOM05D003653 ORTHO05D004249 9.2e-63 243.8 146 86.3
SGA_v2.0_scaffold55G19872 Striga asiatica HOM05D003653 ORTHO05D004249 1.2e-62 243.4 146 87.0
Gorai.013G221900 Gossypium raimondii HOM05D003653 ORTHO05D004249 2.7e-62 242.3 146 84.2
VMungo1215G1873 Vigna mungo HOM05D003653 ORTHO05D004249 2.7e-62 242.3 146 84.2
Rhsim06G0154000 Rhododendron simsii HOM05D003653 ORTHO05D004249 3.5e-62 241.9 146 86.3
Gohir.D13G195800 Gossypium hirsutum HOM05D003653 ORTHO05D004249 5.9e-62 241.1 146 84.2
Glyma.13G114900 Glycine max HOM05D003653 ORTHO05D004249 7.8e-62 240.7 146 83.6
Glyma.17G045100 Glycine max HOM05D003653 ORTHO05D004249 1.0e-61 240.4 146 83.6
vmacro03339 Vaccinium macrocarpon HOM05D003653 ORTHO05D004249 1.3e-61 240.0 146 86.3
arahy.Tifrunner.gnm1.ann1.H5KB4L Arachis hypogaea HOM05D003653 ORTHO05D004249 1.7e-61 239.6 146 82.9
arahy.Tifrunner.gnm1.ann1.LZJ3ZW Arachis hypogaea HOM05D003653 ORTHO05D004249 1.7e-61 239.6 146 82.9
Lj4C921G8 Lonicera japonica HOM05D003653 ORTHO05D004249 1.7e-61 239.6 148 85.8
Phvul.003G126900 Phaseolus vulgaris HOM05D003653 ORTHO05D004249 1.7e-61 239.6 146 83.6
Hma1.2p1_0179F.1_g079140 Hydrangea macrophylla HOM05D003653 ORTHO05D004249 2.3e-61 239.2 146 84.2
Oeu028863.2 Olea europaea HOM05D003653 ORTHO05D004249 2.3e-61 239.2 146 84.9
SalBow5G5324 Salvia bowleyana HOM05D003653 ORTHO05D004249 2.3e-61 239.2 146 84.9
Aa31LG4G3690 Aethionema arabicum HOM05D003653 ORTHO05D004249 3.9e-61 238.4 146 81.5
CANSAT56G3945 Cannabis sativa HOM05D003653 ORTHO05D004249 3.9e-61 238.4 146 83.6
CiPaw.08G039100 Carya illinoinensis HOM05D003653 ORTHO05D004249 3.9e-61 238.4 146 87.0
MBI13_g01694_MAGBIO Magnolia biondii HOM05D003653 ORTHO05D004249 6.6e-61 237.7 146 82.9
Medtr4g124570 Medicago truncatula HOM05D003653 ORTHO05D004249 8.6e-61 237.3 146 81.5
Dinv11396 Davidia involucrata HOM05D003653 ORTHO05D004249 1.1e-60 236.9 146 84.9
TPR.G12688 Trifolium pratense HOM05D003653 ORTHO05D004249 1.1e-60 236.9 146 82.9
Migut.L01598 Erythranthe guttata HOM05D003653 ORTHO05D004249 1.5e-60 236.5 146 83.6
Nitab4.5_0001114g0100 Nicotiana tabacum HOM05D003653 ORTHO05D004249 1.9e-60 236.1 146 80.1
CARHR066480 Cardamine hirsuta HOM05D003653 ORTHO05D004249 2.5e-60 235.7 146 80.1
Sc18g0002910 Simmondsia chinensis HOM05D003653 ORTHO05D004249 3.3e-60 235.3 146 82.2
AL2G33210 Arabidopsis lyrata HOM05D003653 ORTHO05D004249 4.3e-60 235.0 146 80.1
AT1G73430 Arabidopsis thaliana HOM05D003653 ORTHO05D004249 4.3e-60 235.0 146 80.1
Lj4g0027638 Lotus japonicus HOM05D003653 ORTHO05D004249 4.3e-60 235.0 146 82.2
ECA232G2537 Erigeron canadensis HOM05D003653 ORTHO05D004249 5.6e-60 234.6 149 77.9
HanXRQChr11g0323951 Helianthus annuus HOM05D003653 ORTHO05D004249 7.3e-60 234.2 146 77.4
Aqoxy4G00013 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 9.5e-60 233.8 146 84.2
Aqoxy7G04180 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 9.5e-60 233.8 146 84.2
Psat4g019560 Pisum sativum HOM05D003653 ORTHO05D004249 9.5e-60 233.8 146 80.8
Sopen04g003800 Solanum pennellii HOM05D003653 ORTHO05D004249 9.5e-60 233.8 146 80.1
BcaC08g46765 Brassica carinata HOM05D003653 ORTHO05D004249 1.2e-59 233.4 146 80.1
A07p39380 Brassica napus HOM05D003653 ORTHO05D004249 1.2e-59 233.4 146 80.1
C06p47610 Brassica napus HOM05D003653 ORTHO05D004249 1.2e-59 233.4 146 80.1
BolC6t39799H Brassica oleracea HOM05D003653 ORTHO05D004249 1.2e-59 233.4 146 80.1
BraA07t31487Z Brassica rapa HOM05D003653 ORTHO05D004249 1.2e-59 233.4 146 80.1
DCAR_028533 Daucus carota HOM05D003653 ORTHO05D004249 1.2e-59 233.4 146 80.8
CAN.G2030.2 Capsicum annuum HOM05D003653 ORTHO05D004249 1.6e-59 233.0 146 79.5
Thhalv10018146m.g Eutrema salsugineum HOM05D003653 ORTHO05D004249 1.6e-59 233.0 146 80.1
PSO541G4412 Papaver somniferum HOM05D003653 ORTHO05D004249 1.6e-59 233.0 146 82.9
PSO724G1082 Papaver somniferum HOM05D003653 ORTHO05D004249 1.6e-59 233.0 146 83.6
Solyc04g008640.3 Solanum lycopersicum HOM05D003653 ORTHO05D004249 2.1e-59 232.6 146 79.5
BcaNung06460 Brassica carinata HOM05D003653 ORTHO05D004249 3.6e-59 231.9 146 79.5
Cc06_g12780 Coffea canephora HOM05D003653 ORTHO05D004249 4.7e-59 231.5 146 81.5
ECA247G3145 Erigeron canadensis HOM05D003653 ORTHO05D004249 4.7e-59 231.5 146 78.1
Carub.0001s3831 Capsella rubella HOM05D003653 ORTHO05D004249 6.2e-59 231.1 146 78.8
Nn8g38522 Nelumbo nucifera HOM05D003653 ORTHO05D004249 1.0e-58 230.3 137 86.1
Sopen07g006320 Solanum pennellii HOM05D003653 ORTHO05D004249 1.0e-58 230.3 146 78.1
THA.LOC104812181 Tarenaya hassleriana HOM05D003653 ORTHO05D004249 1.0e-58 230.3 146 78.8
CAN.G137.40 Capsicum annuum HOM05D003653 ORTHO05D004249 1.4e-58 229.9 146 79.5
Lalb_Chr13g0299181 Lupinus albus HOM05D003653 ORTHO05D004249 1.4e-58 229.9 146 81.5
PGSC0003DMG400026759 Solanum tuberosum HOM05D003653 ORTHO05D004249 1.4e-58 229.9 146 78.8
Peaxi162Scf00320g00019 Petunia axillaris HOM05D003653 ORTHO05D004249 1.8e-58 229.6 146 80.8
Solyc07g017520.4 Solanum lycopersicum HOM05D003653 ORTHO05D004249 1.8e-58 229.6 146 78.1
PSO135G0095 Papaver somniferum HOM05D003653 ORTHO05D004249 2.3e-58 229.2 146 81.5
Aqoxy1G02116 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 3.1e-58 228.8 146 81.5
CsaV3_5G037140 Cucumis sativus L. HOM05D003653 ORTHO05D004249 5.2e-58 228.0 146 79.5
Hund08907 Selenicereus undatus HOM05D003653 ORTHO05D004249 6.8e-58 227.6 146 80.8
Sp5g28630 Schrenkiella parvula HOM05D003653 ORTHO05D004249 1.2e-57 226.9 146 77.4
Eucgr.C00763 Eucalyptus grandis HOM05D003653 ORTHO05D004249 2.0e-57 226.1 146 82.9
Sed0017256 Sechium edule HOM05D003653 ORTHO05D004249 2.6e-57 225.7 146 80.8
Carub.0002s2017 Capsella rubella HOM05D003653 ORTHO05D004249 4.4e-57 224.9 138 81.2
ATR0099G047 Amborella trichopoda HOM05D003653 ORTHO05D004249 7.5e-57 224.2 146 78.1
Os08g0451000 Oryza sativa ssp. japonica HOM05D003653 ORTHO05D004249 1.3e-56 223.4 146 78.1
MELO3C022888.2 Cucumis melo HOM05D003653 ORTHO05D004249 2.2e-56 222.6 146 78.8
EL10Ac8g18959 Beta vulgaris HOM05D003653 ORTHO05D004249 6.4e-56 221.1 145 78.6
Zm00001eb040740 Zea mays HOM05D003653 ORTHO05D004249 6.4e-56 221.1 146 78.8
AUR62028329 Chenopodium quinoa HOM05D003653 ORTHO05D004249 2.0e-54 216.1 145 78.6
CDE08G1372 Ceratophyllum demersum HOM05D003653 ORTHO05D004249 2.7e-54 215.7 146 75.3
Haze_16164 Corylus avellana HOM05D003653 ORTHO05D004249 3.5e-54 215.3 173 70.5
AUR62025332 Chenopodium quinoa HOM05D003653 ORTHO05D004249 4.6e-54 214.9 145 77.9
Ah.09g228870 Amaranthus hybridus HOM05D003653 ORTHO05D004249 1.0e-53 213.8 145 76.6
C02p31060 Brassica napus HOM05D003653 ORTHO05D004249 3.0e-53 212.2 131 80.9
Mapoly0109s0022 Marchantia polymorpha HOM05D003653 ORTHO05D004249 8.6e-53 210.7 148 70.9
unitig_8.g3535 Utricularia gibba HOM05D003653 ORTHO05D004249 9.5e-52 207.2 146 76.7
Pp3c10_7010 Physcomitrium patens HOM05D003653 ORTHO05D004249 2.0e-49 199.5 150 67.3
Haze_06172 Corylus avellana HOM05D003653 ORTHO05D004249 2.2e-48 196.1 116 89.7
CSS0022852 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 1.1e-47 193.7 117 88.0
Haze_18437 Corylus avellana HOM05D003653 ORTHO05D004249 3.2e-47 192.2 117 87.2
Lj6A103G48 Lonicera japonica HOM05D003653 ORTHO05D004249 2.1e-46 189.5 117 87.2
Actinidia05573 Actinidia chinensis HOM05D003653 ORTHO05D004249 6.6e-45 184.5 125 76.0
BolC2t09153H Brassica oleracea HOM05D003653 ORTHO05D004249 1.4e-42 176.8 146 67.1
Duzib150G1359 Durio zibethinus HOM05D003653 ORTHO05D004249 2.0e-41 172.9 146 66.4
SMO196G0011 Selaginella moellendorffii HOM05D003653 ORTHO05D004249 2.2e-40 169.5 146 58.2
CBR_g20391 Chara braunii HOM05D003653 ORTHO05D004249 4.1e-39 165.2 172 52.3
Lsat_1_v5_gn_9_48260 Lactuca sativa HOM05D003653 ORTHO05D004249 6.0e-38 161.4 146 60.3
Pp3c14_9870 Physcomitrium patens HOM05D003653 ORTHO05D004249 6.6e-37 157.9 150 53.3
SEGI_20750 Sequoiadendron giganteum HOM05D003653 ORTHO05D004249 8.9e-34 147.5 113 66.4
ClCG08G005060 Citrullus lanatus HOM05D003653 ORTHO05D004249 5.8e-33 144.8 116 67.2
PSO675G3146 Papaver somniferum HOM05D003653 ORTHO05D004249 7.8e-30 134.4 130 60.8
TAR383G0271 Trochodendron aralioides HOM05D003653 ORTHO05D004249 3.0e-29 132.5 86 82.6
HPP92_012790 Vanilla planifolia HOM05D003653 ORTHO05D004249 8.1e-27 124.4 146 50.7
Cpa.g.sc82.47 Carica papaya HOM05D003653 ORTHO05D004249 1.3e-24 117.1 61 90.2
Cre03.g203750 Chlamydomonas reinhardtii HOM05D003653 ORTHO05D004249 1.3e-19 100.5 155 40.6
PRCOL_00003556 Prasinoderma coloniale HOM05D003653 ORTHO05D004249 2.4e-15 86.3 114 41.2
MBI08_g05369_MAGBIO Magnolia biondii HOM05D003653 ORTHO05D004249 5.3e-10 68.6 51 74.5
CSS0016412 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 3.4e-09 65.9 34 85.3
SEGI_38760 Sequoiadendron giganteum HOM05D003653 ORTHO05D004249 1.2e-06 57.4 31 80.6


User provided reference genes

Program Settings