Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0095821 Rosa chinensis HOM05D007531 ORTHO05D009484 8.4e-46 186.8 104 100.0
FAN26G1659 Fragaria x ananassa HOM05D007531 ORTHO05D009484 9.9e-39 163.3 104 83.7
FAN26G1806 Fragaria x ananassa HOM05D007531 ORTHO05D009484 9.9e-39 163.3 104 83.7
FvH4_1g09260 Fragaria vesca HOM05D007531 ORTHO05D009484 5.4e-37 157.5 105 84.8
FAN19G1112 Fragaria x ananassa HOM05D007531 ORTHO05D009484 5.4e-37 157.5 105 84.8
FAN23G0531 Fragaria x ananassa HOM05D007531 ORTHO05D009484 5.4e-37 157.5 105 81.9
FAN28G0689 Fragaria x ananassa HOM05D007531 ORTHO05D009484 4.2e-29 131.3 105 72.4
MD15G1222700 Malus domestica HOM05D007531 ORTHO05D009484 1.8e-24 115.9 106 58.5
Prupe.7G193100 Prunus persica HOM05D007531 ORTHO05D009484 2.6e-23 112.1 106 56.6
COL.COLO4_21218 Corchorus olitorius HOM05D007531 ORTHO05D009484 2.9e-22 108.6 106 53.8
Duzib168G1872 Durio zibethinus HOM05D007531 ORTHO05D009484 1.1e-21 106.7 104 54.8
Duzib150G1567 Durio zibethinus HOM05D007531 ORTHO05D009484 1.9e-21 105.9 106 54.7
CANSAT56G3767 Cannabis sativa HOM05D007531 ORTHO05D009484 5.5e-21 104.4 106 53.8
Dinv42427 Davidia involucrata HOM05D007531 ORTHO05D009484 5.5e-21 104.4 104 50.0
Manes.03G043400 Manihot esculenta HOM05D007531 ORTHO05D009484 9.3e-21 103.6 106 53.8
Cpa.g.sc82.75 Carica papaya HOM05D007531 ORTHO05D009484 1.2e-20 103.2 104 50.0
Thecc.09G071300 Theobroma cacao HOM05D007531 ORTHO05D009484 7.9e-20 100.5 106 51.9
CSS0023587 Camellia sinensis var. sinensis HOM05D007531 ORTHO05D009484 3.9e-19 98.2 104 51.9
THA.LOC104809045 Tarenaya hassleriana HOM05D007531 ORTHO05D009484 5.1e-19 97.8 104 49.0
Carub.0001s1884 Capsella rubella HOM05D007531 ORTHO05D009484 2.5e-18 95.5 105 47.6
Potri.006G137401 Populus trichocarpa HOM05D007531 ORTHO05D009484 2.5e-18 95.5 66 68.2
Gorai.004G285500 Gossypium raimondii HOM05D007531 ORTHO05D009484 3.3e-18 95.1 104 50.0
TWI63G1700 Tripterygium wilfordii HOM05D007531 ORTHO05D009484 3.3e-18 95.1 104 49.0
GSVIVG01015026001 Vitis vinifera HOM05D007531 ORTHO05D009484 3.3e-18 95.1 104 47.1
Aa31LG7G3950 Aethionema arabicum HOM05D007531 ORTHO05D009484 5.7e-18 94.4 104 47.1
Gohir.A08G246700 Gossypium hirsutum HOM05D007531 ORTHO05D009484 5.7e-18 94.4 104 50.0
Ciclev10010006m.g Citrus clementina HOM05D007531 ORTHO05D009484 9.7e-18 93.6 104 55.8
QL11p002692 Quercus lobata HOM05D007531 ORTHO05D009484 1.3e-17 93.2 106 49.1
SGA_v2.0_scaffold296G47570 Striga asiatica HOM05D007531 ORTHO05D009484 1.3e-17 93.2 73 63.0
Nitab4.5_0001092g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 1.6e-17 92.8 68 61.8
Atru.chr7.1757 Acer truncatum HOM05D007531 ORTHO05D009484 2.2e-17 92.4 104 51.9
Actinidia39623 Actinidia chinensis HOM05D007531 ORTHO05D009484 2.2e-17 92.4 105 53.3
Gohir.D08G267900 Gossypium hirsutum HOM05D007531 ORTHO05D009484 2.8e-17 92.0 104 49.0
Nitab4.5_0001699g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 3.7e-17 91.7 104 48.1
AL1G31820 Arabidopsis lyrata HOM05D007531 ORTHO05D009484 6.3e-17 90.9 105 46.7
BcaB07g31940 Brassica carinata HOM05D007531 ORTHO05D009484 6.3e-17 90.9 104 48.1
BcaC07g38992 Brassica carinata HOM05D007531 ORTHO05D009484 6.3e-17 90.9 104 48.1
PGR042G0735 Punica granatum HOM05D007531 ORTHO05D009484 6.3e-17 90.9 106 49.1
Sp1g17150 Schrenkiella parvula HOM05D007531 ORTHO05D009484 6.3e-17 90.9 104 47.1
TAR626G0337 Trochodendron aralioides HOM05D007531 ORTHO05D009484 8.2e-17 90.5 73 60.3
Manes.16G092000 Manihot esculenta HOM05D007531 ORTHO05D009484 3.1e-16 88.6 106 47.2
Eucgr.H05011 Eucalyptus grandis HOM05D007531 ORTHO05D009484 4.1e-16 88.2 106 46.2
Sc14g0000480 Simmondsia chinensis HOM05D007531 ORTHO05D009484 4.1e-16 88.2 104 46.2
Aqoxy7G04136 Aquilegia oxysepala HOM05D007531 ORTHO05D009484 5.3e-16 87.8 104 49.0
Nitab4.5_0007540g0040 Nicotiana tabacum HOM05D007531 ORTHO05D009484 5.3e-16 87.8 66 59.1
Thhalv10009175m.g Eutrema salsugineum HOM05D007531 ORTHO05D009484 6.9e-16 87.4 104 48.1
Oeu028116.1 Olea europaea HOM05D007531 ORTHO05D009484 1.2e-15 86.7 105 43.8
Rhsim05G0002900 Rhododendron simsii HOM05D007531 ORTHO05D009484 1.5e-15 86.3 59 64.4
MSTRG.19432 Avicennia marina HOM05D007531 ORTHO05D009484 2.6e-15 85.5 110 45.5
Cfa002948 Carpinus fangiana HOM05D007531 ORTHO05D009484 3.4e-15 85.1 108 46.3
Migut.L01591 Erythranthe guttata HOM05D007531 ORTHO05D009484 4.5e-15 84.7 62 61.3
Sopen07g022090 Solanum pennellii HOM05D007531 ORTHO05D009484 5.9e-15 84.3 60 63.3
PGSC0003DMG400013576 Solanum tuberosum HOM05D007531 ORTHO05D009484 7.7e-15 84.0 65 60.0
HPP92_021129 Vanilla planifolia HOM05D007531 ORTHO05D009484 7.7e-15 84.0 66 59.1
HPP92_021130 Vanilla planifolia HOM05D007531 ORTHO05D009484 7.7e-15 84.0 66 59.1
Dinv25515 Davidia involucrata HOM05D007531 ORTHO05D009484 1.0e-14 83.6 93 44.1
AT1G19240 Arabidopsis thaliana HOM05D007531 ORTHO05D009484 1.3e-14 83.2 106 46.2
ClCG11G000070 Citrullus lanatus HOM05D007531 ORTHO05D009484 1.3e-14 83.2 68 58.8
CDE06G0851 Ceratophyllum demersum HOM05D007531 ORTHO05D009484 1.7e-14 82.8 73 57.5
Solyc07g042450.3 Solanum lycopersicum HOM05D007531 ORTHO05D009484 1.7e-14 82.8 60 61.7
EL10Ac8g18992 Beta vulgaris HOM05D007531 ORTHO05D009484 2.9e-14 82.0 104 45.2
SalBow6G4078 Salvia bowleyana HOM05D007531 ORTHO05D009484 2.9e-14 82.0 109 44.0
Lsat_1_v5_gn_7_35440 Lactuca sativa HOM05D007531 ORTHO05D009484 3.8e-14 81.6 104 43.3
Hma1.2p1_0519F.1_g171380 Hydrangea macrophylla HOM05D007531 ORTHO05D009484 5.0e-14 81.3 55 69.1
CAN.G660.22 Capsicum annuum HOM05D007531 ORTHO05D009484 6.5e-14 80.9 60 60.0
C05p17640 Brassica napus HOM05D007531 ORTHO05D009484 1.9e-13 79.3 104 52.9
BolC5t30467H Brassica oleracea HOM05D007531 ORTHO05D009484 1.9e-13 79.3 105 45.7
DCAR_010491 Daucus carota HOM05D007531 ORTHO05D009484 2.5e-13 79.0 57 61.4
MBI19_g38003_MAGBIO Magnolia biondii HOM05D007531 ORTHO05D009484 2.5e-13 79.0 58 60.3
CsaV3_5G027570 Cucumis sativus L. HOM05D007531 ORTHO05D009484 3.2e-13 78.6 66 56.1
A06p15390 Brassica napus HOM05D007531 ORTHO05D009484 5.5e-13 77.8 57 64.9
BraA06t24652Z Brassica rapa HOM05D007531 ORTHO05D009484 5.5e-13 77.8 57 64.9
Peaxi162Scf00191g01018 Petunia axillaris HOM05D007531 ORTHO05D009484 1.6e-12 76.3 104 43.3
ECA246G1013 Erigeron canadensis HOM05D007531 ORTHO05D009484 2.1e-12 75.9 67 49.3
Cc06_g12620 Coffea canephora HOM05D007531 ORTHO05D009484 2.7e-12 75.5 112 42.0
Medtr4g124770 Medicago truncatula HOM05D007531 ORTHO05D009484 2.7e-12 75.5 66 51.5
Sabra06G0107500 Salix brachista HOM05D007531 ORTHO05D009484 2.7e-12 75.5 46 71.7
CARHR019840 Cardamine hirsuta HOM05D007531 ORTHO05D009484 3.6e-12 75.1 111 39.6
Lj4g0024105 Lotus japonicus HOM05D007531 ORTHO05D009484 4.6e-12 74.7 53 58.5
TPR.G12718 Trifolium pratense HOM05D007531 ORTHO05D009484 1.0e-11 73.6 53 60.4
unitig_578.g16405 Utricularia gibba HOM05D007531 ORTHO05D009484 1.0e-11 73.6 107 40.2
Lalb_Chr11g0074031 Lupinus albus HOM05D007531 ORTHO05D009484 2.3e-11 72.4 104 36.5
RcHm_v2.0_Chr2g0103611 Rosa chinensis HOM05D007531 ORTHO05D009484 5.1e-11 71.2 53 71.7
vmacro17085 Vaccinium macrocarpon HOM05D007531 ORTHO05D009484 5.1e-11 71.2 47 63.8
Psat0s2373g0160 Pisum sativum HOM05D007531 ORTHO05D009484 6.7e-11 70.9 53 56.6
Os01g0144700 Oryza sativa ssp. japonica HOM05D007531 ORTHO05D009484 1.5e-10 69.7 87 41.4
Phvul.004G046500 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 2.0e-10 69.3 53 56.6
arahy.Tifrunner.gnm1.ann1.ETL5CI Arachis hypogaea HOM05D007531 ORTHO05D009484 9.7e-10 67.0 53 54.7
arahy.Tifrunner.gnm1.ann1.J82KAY Arachis hypogaea HOM05D007531 ORTHO05D009484 9.7e-10 67.0 53 54.7
Glyma.17G046400 Glycine max HOM05D007531 ORTHO05D009484 4.8e-09 64.7 48 62.5
VMungo1215G2546 Vigna mungo HOM05D007531 ORTHO05D009484 4.8e-09 64.7 42 64.3
Phvul.003G128000 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 6.3e-09 64.3 51 56.9
Sed0019513 Sechium edule HOM05D007531 ORTHO05D009484 1.1e-08 63.5 43 62.8
Glyma.13G113300 Glycine max HOM05D007531 ORTHO05D009484 1.8e-08 62.8 47 61.7


User provided reference genes

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