Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0095691 Rosa chinensis HOM05D004964 ORTHO05D005918 9.6e-59 229.9 116 100.0
RcHm_v2.0_Chr3g0449661 Rosa chinensis HOM05D004964 ORTHO05D005918 1.8e-25 119.4 66 93.9
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 3.5e-24 115.2 66 90.9
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.9e-23 112.1 66 89.4
FvH4_6g01921 Fragaria vesca HOM05D004964 ORTHO05D005918 8.5e-23 110.5 66 87.9
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 8.5e-23 110.5 66 87.9
FAN09G0282 Fragaria x ananassa HOM05D004964 ORTHO05D005918 8.5e-23 110.5 66 87.9
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 8.5e-23 110.5 66 87.9
FAN14G5822 Fragaria x ananassa HOM05D004964 ORTHO05D005918 9.4e-22 107.1 66 86.4
Thecc.05G270700 Theobroma cacao HOM05D004964 ORTHO05D005918 1.5e-19 99.8 66 72.7
CiPaw.07G072600 Carya illinoinensis HOM05D004964 ORTHO05D005918 4.4e-19 98.2 66 71.2
COL.COLO4_00075 Corchorus olitorius HOM05D004964 ORTHO05D005918 5.7e-19 97.8 67 70.1
Cfa006356 Carpinus fangiana HOM05D004964 ORTHO05D005918 7.5e-19 97.4 66 74.2
Prupe.6G350300 Prunus persica HOM05D004964 ORTHO05D005918 8.3e-18 94.0 66 74.2
Sabra13G0043100 Salix brachista HOM05D004964 ORTHO05D005918 1.8e-17 92.8 66 68.2
Dinv18988 Davidia involucrata HOM05D004964 ORTHO05D005918 2.4e-17 92.4 66 71.2
Potri.013G047100 Populus trichocarpa HOM05D004964 ORTHO05D005918 2.4e-17 92.4 66 68.2
Duzib106G0302 Durio zibethinus HOM05D004964 ORTHO05D005918 3.1e-17 92.0 66 66.7
MD04G1230400 Malus domestica HOM05D004964 ORTHO05D005918 4.1e-17 91.7 66 69.7
Lj2A43G39 Lonicera japonica HOM05D004964 ORTHO05D005918 7.0e-17 90.9 66 66.7
TAR362G0358 Trochodendron aralioides HOM05D004964 ORTHO05D005918 9.1e-17 90.5 65 67.7
QL03p030280 Quercus lobata HOM05D004964 ORTHO05D005918 1.2e-16 90.1 67 67.2
CANSAT01G0497 Cannabis sativa HOM05D004964 ORTHO05D005918 1.6e-16 89.7 66 69.7
Hma1.2p1_1512F.1_g287895 Hydrangea macrophylla HOM05D004964 ORTHO05D005918 3.5e-16 88.6 66 65.2
MD12G1248000 Malus domestica HOM05D004964 ORTHO05D005918 3.5e-16 88.6 66 68.2
Nn4g26424 Nelumbo nucifera HOM05D004964 ORTHO05D005918 3.5e-16 88.6 65 66.2
GSVIVG01023502001 Vitis vinifera HOM05D004964 ORTHO05D005918 4.5e-16 88.2 66 66.7
QL03p029974 Quercus lobata HOM05D004964 ORTHO05D005918 5.9e-16 87.8 66 68.2
QL03p029942 Quercus lobata HOM05D004964 ORTHO05D005918 1.0e-15 87.0 66 68.2
QL03p030425 Quercus lobata HOM05D004964 ORTHO05D005918 1.3e-15 86.7 66 66.7
MBI07_g16903_MAGBIO Magnolia biondii HOM05D004964 ORTHO05D005918 2.2e-15 85.9 66 62.1
Phvul.010G051000 Phaseolus vulgaris HOM05D004964 ORTHO05D005918 2.2e-15 85.9 66 63.6
Solyc01g111410.3 Solanum lycopersicum HOM05D004964 ORTHO05D005918 2.2e-15 85.9 66 60.6
Sopen01g053470 Solanum pennellii HOM05D004964 ORTHO05D005918 2.2e-15 85.9 66 60.6
PGSC0003DMG401006195 Solanum tuberosum HOM05D004964 ORTHO05D005918 2.2e-15 85.9 66 60.6
Manes.08G139500 Manihot esculenta HOM05D004964 ORTHO05D005918 2.9e-15 85.5 66 63.6
Gohir.A08G217400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 3.8e-15 85.1 66 66.7
Aqoxy5G02134 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 5.0e-15 84.7 66 63.6
CSS0014360 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 6.5e-15 84.3 66 66.7
Cpa.g.sc162.40 Carica papaya HOM05D004964 ORTHO05D005918 8.5e-15 84.0 66 57.6
VMungo0331G1958 Vigna mungo HOM05D004964 ORTHO05D005918 8.5e-15 84.0 66 62.1
Oeu016533.1 Olea europaea HOM05D004964 ORTHO05D005918 1.1e-14 83.6 65 61.5
SGA_v2.0_scaffold177G39428 Striga asiatica HOM05D004964 ORTHO05D005918 1.1e-14 83.6 66 59.1
MELO3C008708.2 Cucumis melo HOM05D004964 ORTHO05D005918 1.5e-14 83.2 66 65.2
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 1.5e-14 83.2 66 60.6
vmacro10367 Vaccinium macrocarpon HOM05D004964 ORTHO05D005918 1.5e-14 83.2 82 56.1
CAN.G588.60 Capsicum annuum HOM05D004964 ORTHO05D005918 1.9e-14 82.8 66 57.6
Rhsim09G0136900 Rhododendron simsii HOM05D004964 ORTHO05D005918 2.5e-14 82.4 82 54.9
Aqoxy4G00649 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 3.2e-14 82.0 66 60.6
CsaV3_2G009770 Cucumis sativus L. HOM05D004964 ORTHO05D005918 3.2e-14 82.0 66 63.6
ECA233G3630 Erigeron canadensis HOM05D004964 ORTHO05D005918 3.2e-14 82.0 65 60.0
Ciclev10020293m.g Citrus clementina HOM05D004964 ORTHO05D005918 4.2e-14 81.6 66 63.6
Glyma.07G113400 Glycine max HOM05D004964 ORTHO05D005918 4.2e-14 81.6 66 60.6
Gohir.D08G234400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 4.2e-14 81.6 66 65.2
Gorai.004G249200 Gossypium raimondii HOM05D004964 ORTHO05D005918 4.2e-14 81.6 66 65.2
Peaxi162Scf00407g00626 Petunia axillaris HOM05D004964 ORTHO05D005918 4.2e-14 81.6 66 57.6
QL03p030368 Quercus lobata HOM05D004964 ORTHO05D005918 4.2e-14 81.6 66 66.7
Sed0000191 Sechium edule HOM05D004964 ORTHO05D005918 4.2e-14 81.6 66 65.2
Sc10g0001190 Simmondsia chinensis HOM05D004964 ORTHO05D005918 4.2e-14 81.6 66 60.6
Cc02_g08800 Coffea canephora HOM05D004964 ORTHO05D005918 5.5e-14 81.3 66 60.6
Ca_14064_v3 Cicer arietinum L. HOM05D004964 ORTHO05D005918 1.6e-13 79.7 66 60.6
Glyma.03G113500 Glycine max HOM05D004964 ORTHO05D005918 1.6e-13 79.7 65 60.0
Lalb_Chr03g0040321 Lupinus albus HOM05D004964 ORTHO05D005918 1.6e-13 79.7 66 60.6
SGA_v2.0_scaffold26G11247 Striga asiatica HOM05D004964 ORTHO05D005918 3.6e-13 78.6 66 54.5
TPR.G17496 Trifolium pratense HOM05D004964 ORTHO05D005918 3.6e-13 78.6 66 60.6
Atru.chr2.987 Acer truncatum HOM05D004964 ORTHO05D005918 4.7e-13 78.2 65 64.6
HanXRQChr07g0204481 Helianthus annuus HOM05D004964 ORTHO05D005918 4.7e-13 78.2 65 58.5
Lsat_1_v5_gn_8_24860 Lactuca sativa HOM05D004964 ORTHO05D005918 4.7e-13 78.2 65 56.9
arahy.Tifrunner.gnm1.ann1.H9CC2T Arachis hypogaea HOM05D004964 ORTHO05D005918 6.1e-13 77.8 66 59.1
Hund13719 Selenicereus undatus HOM05D004964 ORTHO05D005918 6.1e-13 77.8 69 60.9
TPR.G33137 Trifolium pratense HOM05D004964 ORTHO05D005918 1.4e-12 76.6 66 59.1
arahy.Tifrunner.gnm1.ann1.J3Q9FM Arachis hypogaea HOM05D004964 ORTHO05D005918 1.8e-12 76.3 66 57.6
Lj3g0015193 Lotus japonicus HOM05D004964 ORTHO05D005918 2.3e-12 75.9 66 57.6
Migut.F00800 Erythranthe guttata HOM05D004964 ORTHO05D005918 3.0e-12 75.5 66 56.1
ATR0736G161 Amborella trichopoda HOM05D004964 ORTHO05D005918 4.0e-12 75.1 114 39.5
Medtr8g006785 Medicago truncatula HOM05D004964 ORTHO05D005918 5.2e-12 74.7 66 57.6
TPR.G15846 Trifolium pratense HOM05D004964 ORTHO05D005918 5.2e-12 74.7 66 57.6
AT1G10095 Arabidopsis thaliana HOM05D004964 ORTHO05D005918 6.8e-12 74.3 66 57.6
AUR62008995 Chenopodium quinoa HOM05D004964 ORTHO05D005918 6.8e-12 74.3 66 59.1
Psat4g225120 Pisum sativum HOM05D004964 ORTHO05D005918 6.8e-12 74.3 66 56.1
DCAR_022832 Daucus carota HOM05D004964 ORTHO05D005918 8.8e-12 73.9 65 58.5
AUR62023306 Chenopodium quinoa HOM05D004964 ORTHO05D005918 1.5e-11 73.2 70 55.7
EL10Ac2g04577 Beta vulgaris HOM05D004964 ORTHO05D005918 2.6e-11 72.4 64 56.2
AL1G20790 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 7.5e-11 70.9 66 54.5
AL1G47560 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 7.5e-11 70.9 66 54.5
unitig_46.g18500 Utricularia gibba HOM05D004964 ORTHO05D005918 9.8e-11 70.5 66 57.6
unitig_47.g30763 Utricularia gibba HOM05D004964 ORTHO05D005918 9.8e-11 70.5 66 57.6
Carub.0001s0952 Capsella rubella HOM05D004964 ORTHO05D005918 1.7e-10 69.7 65 53.8
CARHR010210 Cardamine hirsuta HOM05D004964 ORTHO05D005918 2.2e-10 69.3 104 41.3
Sp2g09220 Schrenkiella parvula HOM05D004964 ORTHO05D005918 2.2e-10 69.3 62 58.1
AL1G20660 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 4.8e-10 68.2 66 54.5
Thhalv10000880m.g Eutrema salsugineum HOM05D004964 ORTHO05D005918 4.8e-10 68.2 104 39.4
HPP92_003061 Vanilla planifolia HOM05D004964 ORTHO05D005918 1.4e-09 66.6 66 56.1
A06p47210 Brassica napus HOM05D004964 ORTHO05D005918 5.4e-09 64.7 67 52.2
BraA06t27592Z Brassica rapa HOM05D004964 ORTHO05D005918 5.4e-09 64.7 67 52.2
SHI23132 Sapria himalayana HOM05D000024 ORTHO05D000007 9.1e-09 63.9 66 47.0
Zm00001eb229480 Zea mays HOM05D004964 ORTHO05D005918 1.6e-08 63.2 118 35.6
A09p21080 Brassica napus HOM05D004964 ORTHO05D005918 2.0e-08 62.8 67 50.7
BraA09t37709Z Brassica rapa HOM05D004964 ORTHO05D005918 2.0e-08 62.8 62 51.6
Eucgr.H04227 Eucalyptus grandis HOM05D004964 ORTHO05D005918 3.5e-08 62.0 54 53.7
Aa31LG1G4780 Aethionema arabicum HOM05D004964 ORTHO05D005918 4.5e-08 61.6 67 53.7
BcaC06g34559 Brassica carinata HOM05D004964 ORTHO05D005918 5.9e-08 61.2 69 53.6
C07p27180 Brassica napus HOM05D004964 ORTHO05D005918 5.9e-08 61.2 69 53.6
C07p27190 Brassica napus HOM05D004964 ORTHO05D005918 5.9e-08 61.2 69 53.6
BolC7t43245H Brassica oleracea HOM05D004964 ORTHO05D005918 5.9e-08 61.2 69 53.6
BolC7t43246H Brassica oleracea HOM05D004964 ORTHO05D005918 5.9e-08 61.2 69 53.6
BcaC06g31621 Brassica carinata HOM05D004964 ORTHO05D005918 1.3e-07 60.1 69 52.2
CARHR222860 Cardamine hirsuta HOM05D004964 ORTHO05D005918 2.3e-07 59.3 79 43.0
Os01g0684800 Oryza sativa ssp. japonica HOM05D004964 ORTHO05D005918 3.8e-07 58.5 118 34.7
BcaC04g21837 Brassica carinata HOM05D004964 ORTHO05D005918 1.5e-06 56.6 63 52.4
C09p26820 Brassica napus HOM05D004964 ORTHO05D005918 1.5e-06 56.6 63 52.4
AL1G47570 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 2.5e-06 55.8 55 50.9


User provided reference genes

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