Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0095101 Rosa chinensis HOM05D006378 ORTHO05D007959 7.7e-82 307.0 144 100.0
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 1.9e-27 126.3 80 77.5
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 4.1e-27 125.2 80 76.2
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 4.1e-27 125.2 80 76.2
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 9.2e-27 124.0 80 75.0
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 9.2e-27 124.0 80 75.0
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 1.5e-24 116.7 73 76.7
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 4.3e-24 115.2 81 66.7
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 1.2e-23 113.6 73 75.3
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 1.6e-23 113.2 81 65.4
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 1.6e-23 113.2 81 67.9
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 2.8e-23 112.5 81 66.7
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 2.8e-23 112.5 81 64.2
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 3.6e-23 112.1 86 60.5
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 4.7e-23 111.7 72 70.8
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 4.7e-23 111.7 86 60.5
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 6.2e-23 111.3 71 74.6
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 6.2e-23 111.3 81 65.4
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 8.1e-23 110.9 81 64.2
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 8.1e-23 110.9 81 65.4
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 1.1e-22 110.5 81 66.7
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 1.8e-22 109.8 81 63.0
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 2.4e-22 109.4 81 63.0
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 2.4e-22 109.4 73 69.9
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 2.4e-22 109.4 73 69.9
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 3.1e-22 109.0 81 64.2
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 3.1e-22 109.0 81 64.2
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 3.1e-22 109.0 73 71.2
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 3.1e-22 109.0 81 63.0
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 4.0e-22 108.6 73 71.2
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 4.0e-22 108.6 81 65.4
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 4.0e-22 108.6 81 65.4
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 4.0e-22 108.6 88 59.1
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 5.2e-22 108.2 73 67.1
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 5.2e-22 108.2 81 66.7
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 6.9e-22 107.8 81 63.0
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 6.9e-22 107.8 81 64.2
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 6.9e-22 107.8 79 63.3
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 6.9e-22 107.8 89 59.6
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 6.9e-22 107.8 73 67.1
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 9.0e-22 107.5 81 65.4
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 9.0e-22 107.5 80 66.2
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 9.0e-22 107.5 73 65.8
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 9.0e-22 107.5 81 64.2
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 9.0e-22 107.5 81 65.4
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 1.2e-21 107.1 73 68.5
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 1.5e-21 106.7 80 62.5
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 1.5e-21 106.7 73 65.8
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 1.5e-21 106.7 73 65.8
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 1.5e-21 106.7 81 63.0
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 2.0e-21 106.3 77 66.2
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 2.0e-21 106.3 77 66.2
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 2.0e-21 106.3 81 63.0
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 2.0e-21 106.3 81 63.0
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 2.0e-21 106.3 81 61.7
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 2.0e-21 106.3 81 59.3
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 2.6e-21 105.9 81 61.7
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 3.4e-21 105.5 73 67.1
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 3.4e-21 105.5 73 67.1
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 4.4e-21 105.1 72 68.1
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 4.4e-21 105.1 73 65.8
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 4.4e-21 105.1 81 60.5
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 4.4e-21 105.1 73 67.1
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 5.8e-21 104.8 73 65.8
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 7.6e-21 104.4 88 55.7
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 7.6e-21 104.4 73 65.8
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 7.6e-21 104.4 73 65.8
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 7.6e-21 104.4 71 67.6
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 9.9e-21 104.0 81 60.5
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 9.9e-21 104.0 73 64.4
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 1.3e-20 103.6 73 64.4
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 1.3e-20 103.6 73 61.6
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 1.7e-20 103.2 81 59.3
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 2.2e-20 102.8 81 59.3
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 2.2e-20 102.8 79 62.0
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 2.9e-20 102.4 81 58.0
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 2.9e-20 102.4 80 58.8
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 2.9e-20 102.4 80 62.5
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 2.9e-20 102.4 81 59.3
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 3.8e-20 102.1 81 58.0
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 4.9e-20 101.7 83 59.0
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 6.4e-20 101.3 86 55.8
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 6.4e-20 101.3 86 55.8
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 6.4e-20 101.3 86 55.8
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 6.4e-20 101.3 73 63.0
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 8.4e-20 100.9 73 67.1
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 8.4e-20 100.9 73 63.0
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 1.1e-19 100.5 73 60.3
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 1.4e-19 100.1 86 55.8
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 1.4e-19 100.1 86 55.8
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 1.4e-19 100.1 81 59.3
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 2.4e-19 99.4 73 60.3
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 3.2e-19 99.0 73 63.0
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 1.6e-18 96.7 72 59.7
SEGI_03485 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 2.1e-18 96.3 88 51.1
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 3.5e-18 95.5 81 56.8
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 6.0e-18 94.7 86 53.5
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 1.7e-17 93.2 71 53.5
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 1.1e-16 90.5 71 54.9
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 5.6e-16 88.2 71 53.5
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 1.6e-15 86.7 100 47.0
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 2.1e-15 86.3 62 53.2
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 2.4e-14 82.8 85 47.1
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 2.0e-13 79.7 71 47.9
Zm00001eb401890 Zea mays HOM05D006378 ORTHO05D007959 5.4e-11 71.6 54 55.6
Psat7g020000 Pisum sativum HOM05D006378 ORTHO05D007959 3.9e-09 65.5 46 67.4
SHI02336 Sapria himalayana HOM05D006378 ORTHO05D007959 8.1e-07 57.8 38 60.5


User provided reference genes

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