Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0094991 Rosa chinensis HOM05D001739 ORTHO05D029616 0.0e+00 1129.0 580 100.0
RcHm_v2.0_Chr2g0095061 Rosa chinensis HOM05D001739 ORTHO05D029616 0.0e+00 1114.0 580 99.0
FAN10G4203 Fragaria x ananassa HOM05D001739 ORTHO05D029616 1.0e-225 786.9 598 71.4
RcHm_v2.0_Chr2g0095131 Rosa chinensis HOM05D001739 ORTHO05D015654 9.8e-144 514.6 587 52.6
FAN26G3315 Fragaria x ananassa HOM05D001739 ORTHO05D025407 2.3e-140 503.4 603 52.2
FvH4_1g08660 Fragaria vesca HOM05D001739 ORTHO05D025407 1.9e-139 500.4 603 51.4
FAN26G0106 Fragaria x ananassa HOM05D001739 ORTHO05D015654 1.1e-126 458.0 600 50.3
FvH4_1g08691 Fragaria vesca HOM05D001739 ORTHO05D015654 1.4e-126 457.6 602 50.5
FvH4_1g08730 Fragaria vesca HOM05D001739 ORTHO05D015654 5.4e-126 455.7 608 49.2
FAN19G1672 Fragaria x ananassa HOM05D001739 ORTHO05D015654 6.0e-125 452.2 606 50.2
FvH4_1g08670 Fragaria vesca HOM05D001739 ORTHO05D025407 1.5e-123 447.6 603 49.3
FAN19G2992 Fragaria x ananassa HOM05D001739 ORTHO05D015654 2.6e-120 436.8 597 48.2
FAN26G3321 Fragaria x ananassa HOM05D001739 ORTHO05D015654 5.8e-120 435.6 599 48.9
FAN26G3373 Fragaria x ananassa HOM05D001739 ORTHO05D015654 2.6e-112 410.2 607 47.1
FvH4_1g08750 Fragaria vesca HOM05D001739 ORTHO05D015654 3.5e-109 399.8 594 47.1
FAN26G1945 Fragaria x ananassa HOM05D001739 ORTHO05D035581 1.2e-96 358.2 603 42.3
Prupe.7G193800 Prunus persica HOM05D001739 ORTHO05D004575 6.7e-92 342.4 500 44.2
MD15G1221900 Malus domestica HOM05D001739 ORTHO05D004575 2.5e-91 340.5 500 44.8
FAN26G0091 Fragaria x ananassa HOM05D001739 ORTHO05D004575 3.7e-90 336.7 493 43.2
FAN26G1120 Fragaria x ananassa HOM05D001739 ORTHO05D004575 3.7e-90 336.7 493 43.2
FAN23G1590 Fragaria x ananassa HOM05D001739 ORTHO05D004575 1.8e-89 334.3 493 43.4
RcHm_v2.0_Chr2g0095731 Rosa chinensis HOM05D001739 ORTHO05D004575 2.4e-89 334.0 493 42.8
FvH4_1g09210 Fragaria vesca HOM05D001739 ORTHO05D004575 5.3e-89 332.8 493 43.4
Prupe.6G204500 Prunus persica HOM05D001739 ORTHO05D004575 2.6e-88 330.5 486 43.6
FvH4_7g02570 Fragaria vesca HOM05D001739 ORTHO05D029616 2.2e-87 327.4 278 68.0
FAN28G0236 Fragaria x ananassa HOM05D001739 ORTHO05D004575 2.2e-87 327.4 523 41.9
FAN19G0975 Fragaria x ananassa HOM05D001739 ORTHO05D004575 3.8e-87 326.6 493 42.8
MD02G1099100 Malus domestica HOM05D001739 ORTHO05D004575 1.6e-85 321.2 463 44.9
FvH4_1g13570 Fragaria vesca HOM05D001739 ORTHO05D004575 3.0e-84 317.0 523 42.1
FvH4_1g13610 Fragaria vesca HOM05D001739 ORTHO05D004575 1.5e-83 314.7 523 41.9
TWI32G0648 Tripterygium wilfordii HOM05D001739 ORTHO05D004575 1.9e-83 314.3 492 39.6
FAN19G0770 Fragaria x ananassa HOM05D001739 ORTHO05D004575 2.5e-83 313.9 523 41.9
FAN23G1058 Fragaria x ananassa HOM05D001739 ORTHO05D025407 9.6e-83 312.0 351 52.7
Dinv25520 Davidia involucrata HOM05D001739 ORTHO05D004575 2.1e-82 310.8 486 41.4
FAN19G0960 Fragaria x ananassa HOM05D001739 ORTHO05D025407 2.1e-82 310.8 351 51.3
Prupe.7G186700 Prunus persica HOM05D001739 ORTHO05D004575 3.7e-82 310.1 526 40.9
vmacro17113 Vaccinium macrocarpon HOM05D001739 ORTHO05D004575 5.3e-81 306.2 481 40.3
GSVIVG01023097001 Vitis vinifera HOM05D001739 ORTHO05D004575 5.3e-81 306.2 466 41.8
Rhsim05G0003800 Rhododendron simsii HOM05D001739 ORTHO05D004575 3.4e-80 303.5 488 39.5
Manes.16G091500 Manihot esculenta HOM05D001739 ORTHO05D004575 1.0e-79 302.0 488 40.8
Hma1.2p1_0169F.1_g074380 Hydrangea macrophylla HOM05D001739 ORTHO05D004575 2.5e-78 297.4 489 39.7
Sabra18G0055900 Salix brachista HOM05D001739 ORTHO05D004575 7.2e-78 295.8 475 39.6
COL.COLO4_21223 Corchorus olitorius HOM05D001739 ORTHO05D004575 1.2e-77 295.0 479 39.0
Cfa002954 Carpinus fangiana HOM05D001739 ORTHO05D004575 2.7e-77 293.9 486 40.7
Atru.chr7.1752 Acer truncatum HOM05D001739 ORTHO05D004575 3.5e-77 293.5 493 39.6
vmacro17095 Vaccinium macrocarpon HOM05D001739 ORTHO05D004575 1.3e-76 291.6 481 38.5
vmacro23084 Vaccinium macrocarpon HOM05D001739 ORTHO05D004575 2.3e-76 290.8 481 38.5
Ciclev10023308m.g Citrus clementina HOM05D001739 ORTHO05D004575 3.9e-76 290.0 504 38.7
ClCG03G014800 Citrullus lanatus HOM05D001739 ORTHO05D004575 1.3e-74 285.0 486 41.2
Potri.006G137900 Populus trichocarpa HOM05D001739 ORTHO05D004575 2.2e-74 284.3 490 38.8
FAN26G0455 Fragaria x ananassa HOM05D001739 ORTHO05D004575 4.8e-74 283.1 522 39.5
MELO3C015548.2 Cucumis melo HOM05D001739 ORTHO05D004575 6.3e-74 282.7 486 40.1
Thecc.09G071800 Theobroma cacao HOM05D001739 ORTHO05D004575 1.8e-73 281.2 479 38.4
CsaV3_1G041350 Cucumis sativus L. HOM05D001739 ORTHO05D004575 2.4e-73 280.8 486 40.1
CSS0017458 Camellia sinensis var. sinensis HOM05D001739 ORTHO05D004575 4.1e-73 280.0 497 37.4
PGR142G3865 Punica granatum HOM05D001739 ORTHO05D004575 6.9e-73 279.3 486 37.4
FAN26G3327 Fragaria x ananassa HOM05D001739 ORTHO05D015654 9.0e-73 278.9 592 37.7
Duzib168G0208 Durio zibethinus HOM05D001739 ORTHO05D004575 1.2e-72 278.5 479 37.8
MSTRG.5982 Avicennia marina HOM05D001739 ORTHO05D004575 2.6e-72 277.3 482 37.6
QL11p002157 Quercus lobata HOM05D001739 ORTHO05D004575 3.4e-72 276.9 504 37.7
Lj7C690T11 Lonicera japonica HOM05D001739 ORTHO05D004575 4.5e-72 276.6 486 37.4
Gohir.A07G016500 Gossypium hirsutum HOM05D001739 ORTHO05D004575 5.9e-72 276.2 494 37.7
Gohir.D07G016300 Gossypium hirsutum HOM05D001739 ORTHO05D004575 1.0e-71 275.4 494 38.1
HanXRQChr09g0273551 Helianthus annuus HOM05D001739 ORTHO05D004575 1.7e-71 274.6 481 37.2
Gorai.001G017100 Gossypium raimondii HOM05D001739 ORTHO05D004575 2.2e-71 274.2 494 37.9
Lalb_Chr13g0299281 Lupinus albus HOM05D001739 ORTHO05D004575 2.9e-71 273.9 484 37.4
Cpa.g.sc32.6 Carica papaya HOM05D001739 ORTHO05D004575 6.5e-71 272.7 474 37.3
CANSAT56G3462 Cannabis sativa HOM05D001739 ORTHO05D004575 1.1e-70 271.9 500 36.8
TAR383G0739 Trochodendron aralioides HOM05D001739 ORTHO05D004575 1.1e-70 271.9 487 36.3
CiPaw.03G202600 Carya illinoinensis HOM05D001739 ORTHO05D004575 9.4e-70 268.9 486 38.5
Nn8g40294 Nelumbo nucifera HOM05D001739 ORTHO05D004575 9.4e-70 268.9 486 36.2
arahy.Tifrunner.gnm1.ann1.9HZQ4R Arachis hypogaea HOM05D001739 ORTHO05D004575 1.2e-69 268.5 476 37.6
Cc06_g12580 Coffea canephora HOM05D001739 ORTHO05D004575 1.6e-69 268.1 494 36.0
Lsat_1_v5_gn_7_35381 Lactuca sativa HOM05D001739 ORTHO05D004575 7.9e-69 265.8 480 36.0
arahy.Tifrunner.gnm1.ann1.SDZ4E8 Arachis hypogaea HOM05D001739 ORTHO05D004575 1.0e-68 265.4 476 37.0
Lj4g0016027 Lotus japonicus HOM05D001739 ORTHO05D004575 1.0e-68 265.4 486 36.0
Lalb_Chr12g0200311 Lupinus albus HOM05D001739 ORTHO05D004575 1.0e-68 265.4 475 38.1
arahy.Tifrunner.gnm1.ann1.WW7XLJ Arachis hypogaea HOM05D001739 ORTHO05D004575 6.7e-68 262.7 474 36.7
Glyma.17G046900 Glycine max HOM05D001739 ORTHO05D004575 2.5e-67 260.8 496 37.1
Sopen07g021980 Solanum pennellii HOM05D001739 ORTHO05D004575 2.5e-67 260.8 477 36.5
Sed0021617 Sechium edule HOM05D001739 ORTHO05D004575 3.3e-67 260.4 488 38.5
Sed0004150 Sechium edule HOM05D001739 ORTHO05D004575 5.7e-67 259.6 502 37.1
Glyma.13G112900 Glycine max HOM05D001739 ORTHO05D004575 1.3e-66 258.5 499 36.9
Ca_09790_v3 Cicer arietinum L. HOM05D001739 ORTHO05D004575 1.7e-66 258.1 491 36.7
arahy.Tifrunner.gnm1.ann1.7457H2 Arachis hypogaea HOM05D001739 ORTHO05D004575 2.2e-66 257.7 474 36.7
DCAR_005064 Daucus carota HOM05D001739 ORTHO05D004575 3.7e-66 256.9 451 36.6
CAN.G63.12 Capsicum annuum HOM05D001739 ORTHO05D004575 2.4e-65 254.2 482 35.3
Nitab4.5_0007773g0020 Nicotiana tabacum HOM05D001739 ORTHO05D004575 3.1e-65 253.8 486 35.0
SGA_v2.0_scaffold281G46906 Striga asiatica HOM05D001739 ORTHO05D004575 3.1e-65 253.8 459 37.0
VMungo1215G0229 Vigna mungo HOM05D001739 ORTHO05D004575 9.1e-65 252.3 495 36.4
FvH4_5g06040 Fragaria vesca HOM05D001739 ORTHO05D029422 1.5e-64 251.5 531 37.7
ECA240G3214 Erigeron canadensis HOM05D001739 ORTHO05D004575 4.5e-64 250.0 496 33.3
Medtr1g072890 Medicago truncatula HOM05D001739 ORTHO05D004575 7.7e-64 249.2 487 35.5
Nitab4.5_0001565g0110 Nicotiana tabacum HOM05D001739 ORTHO05D004575 1.0e-63 248.8 536 33.8
AUR62019633 Chenopodium quinoa HOM05D001739 ORTHO05D004575 1.7e-63 248.1 488 34.8
HanXRQChr04g0122371 Helianthus annuus HOM05D001739 ORTHO05D004575 2.9e-63 247.3 483 36.0
AUR62039592 Chenopodium quinoa HOM05D001739 ORTHO05D004575 3.8e-63 246.9 488 35.0
Solyc07g042380.4 Solanum lycopersicum HOM05D001739 ORTHO05D004575 3.8e-63 246.9 473 34.7
Phvul.003G128600 Phaseolus vulgaris HOM05D001739 ORTHO05D004575 5.0e-63 246.5 496 34.7
Medtr1g072970 Medicago truncatula HOM05D001739 ORTHO05D004575 6.5e-63 246.1 499 35.7
Psat6g134600 Pisum sativum HOM05D001739 ORTHO05D004575 8.5e-63 245.7 485 35.3
Ah.09g229240 Amaranthus hybridus HOM05D001739 ORTHO05D004575 1.2e-61 241.9 497 33.2
TPR.G18558 Trifolium pratense HOM05D001739 ORTHO05D004575 3.6e-61 240.4 475 35.4
EL10Ac8g19018 Beta vulgaris HOM05D001739 ORTHO05D004575 6.1e-61 239.6 487 34.7
DCAR_003861 Daucus carota HOM05D001739 ORTHO05D004575 1.8e-60 238.0 408 37.5
TPR.G13945 Trifolium pratense HOM05D001739 ORTHO05D004575 8.8e-60 235.7 461 36.0
FAN08G1830 Fragaria x ananassa HOM05D001739 ORTHO05D004575 2.6e-59 234.2 604 36.3
Haze_26051 Corylus avellana HOM05D001739 ORTHO05D004575 1.3e-58 231.9 486 36.2
SHI02768 Sapria himalayana HOM05D001739 ORTHO05D004575 2.8e-58 230.7 483 34.6
Peaxi162Scf00191g01112 Petunia axillaris HOM05D001739 ORTHO05D004575 1.1e-57 228.8 475 33.5
THA.LOC104809049 Tarenaya hassleriana HOM05D001739 ORTHO05D004575 2.4e-57 227.6 498 32.3
CDE12G0121 Ceratophyllum demersum HOM05D001739 ORTHO05D004575 3.1e-57 227.3 467 34.3
HPP92_004359 Vanilla planifolia HOM05D001739 ORTHO05D004575 5.3e-57 226.5 484 34.3
Psat7g002920 Pisum sativum HOM05D001739 ORTHO05D004575 1.6e-56 224.9 475 34.3
Sp4g16630 Schrenkiella parvula HOM05D001739 ORTHO05D004575 1.6e-56 224.9 496 33.7
FAN23G2998 Fragaria x ananassa HOM05D001739 ORTHO05D198978 2.0e-56 224.6 265 52.8
AUR62028280 Chenopodium quinoa HOM05D001739 ORTHO05D004575 5.9e-56 223.0 488 33.2
FAN26G1219 Fragaria x ananassa HOM05D001739 ORTHO05D210162 1.3e-55 221.9 356 44.1
BolC3t14614H Brassica oleracea HOM05D001739 ORTHO05D004575 1.7e-55 221.5 463 35.4
PSO104G0064 Papaver somniferum HOM05D001739 ORTHO05D004575 2.2e-55 221.1 483 32.5
BraA03t11167Z Brassica rapa HOM05D001739 ORTHO05D004575 8.5e-55 219.2 463 34.8
Sc24g0001530 Simmondsia chinensis HOM05D001739 ORTHO05D004575 8.5e-55 219.2 490 32.4
A03p19100 Brassica napus HOM05D001739 ORTHO05D004575 1.1e-54 218.8 463 34.8
Hund23253 Selenicereus undatus HOM05D001739 ORTHO05D004575 3.2e-54 217.2 498 31.5
BcaC01g05798 Brassica carinata HOM05D001739 ORTHO05D004575 1.6e-53 214.9 463 34.3
BcaB02g09558 Brassica carinata HOM05D001739 ORTHO05D004575 2.1e-53 214.5 463 33.7
C03p22320 Brassica napus HOM05D001739 ORTHO05D004575 2.1e-53 214.5 463 34.8
Thhalv10016153m.g Eutrema salsugineum HOM05D001739 ORTHO05D004575 2.1e-53 214.5 502 32.7
PSO421G0331 Papaver somniferum HOM05D001739 ORTHO05D004575 2.1e-53 214.5 483 31.7
Aa31LG9G14080 Aethionema arabicum HOM05D001739 ORTHO05D004575 2.7e-53 214.2 485 33.6
ATR0681G226 Amborella trichopoda HOM05D001739 ORTHO05D004575 6.1e-53 213.0 453 33.6
FAN18G1935 Fragaria x ananassa HOM05D001739 ORTHO05D029422 3.0e-52 210.7 452 37.6
BcaB01g03896 Brassica carinata HOM05D001739 ORTHO05D004575 6.7e-52 209.5 473 34.0
AT2G34357 Arabidopsis thaliana HOM05D001739 ORTHO05D004575 1.1e-51 208.8 463 33.3
BraA05t20081Z Brassica rapa HOM05D001739 ORTHO05D004575 1.5e-51 208.4 463 33.7
unitig_744.g24652 Utricularia gibba HOM05D001739 ORTHO05D004575 2.0e-51 208.0 473 31.9
A05p11320 Brassica napus HOM05D001739 ORTHO05D004575 4.4e-51 206.8 463 34.1
Aqoxy7G03292 Aquilegia oxysepala HOM05D001739 ORTHO05D004575 5.7e-51 206.5 479 32.2
FvH4_5g05990 Fragaria vesca HOM05D001739 ORTHO05D029422 9.7e-51 205.7 594 34.0
Carub.0004s1602 Capsella rubella HOM05D001739 ORTHO05D004575 4.8e-50 203.4 489 32.1
AL4G30320 Arabidopsis lyrata HOM05D001739 ORTHO05D004575 1.1e-49 202.2 486 32.9
C04p14660 Brassica napus HOM05D001739 ORTHO05D004575 1.4e-49 201.8 463 33.0
BolC4t23047H Brassica oleracea HOM05D001739 ORTHO05D004575 1.4e-49 201.8 463 33.0
BcaC02g11606 Brassica carinata HOM05D001739 ORTHO05D004575 1.8e-49 201.4 522 31.4
C04p13350 Brassica napus HOM05D001739 ORTHO05D004575 1.8e-49 201.4 522 31.4
BcaC02g11500 Brassica carinata HOM05D001739 ORTHO05D004575 5.3e-49 199.9 462 32.7
CARHR128440 Cardamine hirsuta HOM05D001739 ORTHO05D004575 7.7e-48 196.1 467 33.8
FAN18G0943 Fragaria x ananassa HOM05D001739 ORTHO05D029422 8.5e-47 192.6 594 32.8
TPR.G34376 Trifolium pratense HOM05D001739 ORTHO05D004575 4.2e-46 190.3 370 35.1
CDE04G0230 Ceratophyllum demersum HOM05D001739 ORTHO05D004575 7.2e-46 189.5 335 36.1
FAN28G3010 Fragaria x ananassa HOM05D001739 ORTHO05D207861 2.7e-45 187.6 243 51.4
Os02g0782100 Oryza sativa ssp. japonica HOM05D001739 ORTHO05D004575 3.8e-39 167.2 360 32.5
Pp3c2_3190 Physcomitrium patens HOM05D001739 ORTHO05D004575 2.5e-38 164.5 489 26.6
CAN.G333.15 Capsicum annuum HOM05D001739 ORTHO05D004575 2.7e-37 161.0 267 37.5
SEGI_37036 Sequoiadendron giganteum HOM05D001739 ORTHO05D004575 2.2e-34 151.4 427 27.6
FAN28G1182 Fragaria x ananassa HOM05D001739 ORTHO05D004575 6.3e-34 149.8 152 55.3
SEGI_16086 Sequoiadendron giganteum HOM05D001739 ORTHO05D004575 3.1e-33 147.5 488 27.5
FAN23G2122 Fragaria x ananassa HOM05D001739 ORTHO05D035581 7.0e-33 146.4 214 50.0
FAN19G1997 Fragaria x ananassa HOM05D001739 ORTHO05D015654 3.3e-30 137.5 206 44.2
Mapoly0061s0020 Marchantia polymorpha HOM05D001739 ORTHO05D004575 9.5e-30 136.0 491 24.4
Sc18g0003470 Simmondsia chinensis HOM05D001739 ORTHO05D004575 8.0e-29 132.9 229 36.7
AUR62025277 Chenopodium quinoa HOM05D001739 ORTHO05D004575 1.4e-28 132.1 199 41.2
AagrBONN_evm.TU.Sc2ySwM_117.3958 Anthoceros agrestis HOM05D001739 ORTHO05D004575 4.0e-28 130.6 496 23.4
FAN04G1381 Fragaria x ananassa HOM05D001739 ORTHO05D004575 1.6e-24 118.6 238 41.2
FvH4_1g13590 Fragaria vesca HOM05D001739 ORTHO05D035581 1.5e-22 112.1 145 53.8
SMO361G0459 Selaginella moellendorffii HOM05D001739 ORTHO05D004575 9.5e-22 109.4 489 23.5
Eucgr.C00777 Eucalyptus grandis HOM05D001739 ORTHO05D004575 1.6e-21 108.6 156 40.4
MD02G1098900 Malus domestica HOM05D001739 ORTHO05D004575 2.8e-21 107.8 127 49.6
Zm00001eb257110 Zea mays HOM05D001739 ORTHO05D004575 6.2e-21 106.7 173 35.8
FAN26G0957 Fragaria x ananassa HOM05D001739 ORTHO05D015654 7.5e-19 99.8 108 50.0
CDE12G0742 Ceratophyllum demersum HOM05D001739 ORTHO05D004575 7.8e-16 89.7 117 41.9
Rhsim13G0126900 Rhododendron simsii HOM05D001739 ORTHO05D004575 8.6e-15 86.3 227 29.1
AT4G23540 Arabidopsis thaliana HOM05D001739 ORTHO05D006605 3.3e-14 84.3 494 22.5
AL7G29870 Arabidopsis lyrata HOM05D001739 ORTHO05D006605 1.6e-13 82.0 499 22.6
Carub.0007s1775 Capsella rubella HOM05D001739 ORTHO05D006605 8.1e-13 79.7 492 22.4
THA.LOC104804954 Tarenaya hassleriana HOM05D001739 ORTHO05D006605 8.9e-12 76.3 449 22.0
THA.LOC104806422 Tarenaya hassleriana HOM05D001739 ORTHO05D006605 8.9e-12 76.3 449 22.0
EL10Ac8g19019 Beta vulgaris HOM05D001739 ORTHO05D010736 4.4e-11 73.9 153 31.4
FvH4_6g18960 Fragaria vesca HOM05D001739 ORTHO05D035276 1.4e-09 68.9 157 33.8
Migut.J00896 Erythranthe guttata HOM05D001739 ORTHO05D004575 2.1e-08 65.1 146 30.1
CARHR230910 Cardamine hirsuta HOM05D001739 ORTHO05D006605 7.8e-08 63.2 462 21.4
Sp7g21460 Schrenkiella parvula HOM05D001739 ORTHO05D006605 5.6e-06 57.0 488 20.7


User provided reference genes

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