Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0094891 Rosa chinensis HOM05D008087 ORTHO05D010187 5.3e-100 367.9 208 100.0
Prupe.7G199300 Prunus persica HOM05D008087 ORTHO05D010187 2.0e-86 322.8 212 87.7
MD15G1217200 Malus domestica HOM05D008087 ORTHO05D010187 4.2e-81 305.1 212 81.6
QL11p000704 Quercus lobata HOM05D008087 ORTHO05D010187 2.1e-72 276.2 209 75.6
Cfa002992 Carpinus fangiana HOM05D008087 ORTHO05D010187 3.6e-72 275.4 211 75.4
Ciclev10009482m.g Citrus clementina HOM05D008087 ORTHO05D010187 6.1e-72 274.6 211 73.9
Thecc.09G077500 Theobroma cacao HOM05D008087 ORTHO05D010187 8.0e-72 274.2 211 75.8
Glyma.13G110250 Glycine max HOM05D008087 ORTHO05D010187 3.0e-71 272.3 209 73.2
Sabra18G0058300 Salix brachista HOM05D008087 ORTHO05D010187 6.8e-71 271.2 213 76.1
GSVIVG01015086001 Vitis vinifera HOM05D004023 ORTHO05D004681 8.8e-71 270.8 202 77.2
Gorai.010G088200 Gossypium raimondii HOM05D008087 ORTHO05D010187 4.4e-70 268.5 211 73.0
TWI34G0776 Tripterygium wilfordii HOM05D008087 ORTHO05D010187 5.7e-70 268.1 211 70.6
COL.COLO4_18101 Corchorus olitorius HOM05D008087 ORTHO05D010187 7.5e-70 267.7 211 73.5
Glyma.17G049450 Glycine max HOM05D008087 ORTHO05D010187 1.3e-69 266.9 209 72.2
Gohir.A06G076300 Gossypium hirsutum HOM05D008087 ORTHO05D010187 1.7e-69 266.5 206 72.3
Nitab4.5_0002966g0020 Nicotiana tabacum HOM05D008087 ORTHO05D010187 2.8e-69 265.8 209 72.7
Potri.018G065700 Populus trichocarpa HOM05D008087 ORTHO05D010187 3.7e-69 265.4 213 74.2
Lj4g0020355 Lotus japonicus HOM05D008087 ORTHO05D010187 4.8e-69 265.0 209 72.2
Manes.16G095600 Manihot esculenta HOM05D008087 ORTHO05D010187 6.3e-69 264.6 211 72.0
CSS0002060 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 8.3e-69 264.2 211 72.0
Gohir.D06G075300 Gossypium hirsutum HOM05D008087 ORTHO05D010187 8.3e-69 264.2 211 72.5
DCAR_024749 Daucus carota HOM05D008087 ORTHO05D010187 1.1e-68 263.8 211 70.1
Hma1.2p1_0179F.1_g079550 Hydrangea macrophylla HOM05D008087 ORTHO05D010187 1.4e-68 263.5 211 72.5
Eucgr.C03187 Eucalyptus grandis HOM05D008087 ORTHO05D010187 3.1e-68 262.3 211 71.1
Phvul.003G131000 Phaseolus vulgaris HOM05D008087 ORTHO05D010187 3.1e-68 262.3 209 71.3
Duzib168G2281 Durio zibethinus HOM05D008087 ORTHO05D010187 5.4e-68 261.5 211 71.6
CSS0037579 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 2.0e-67 259.6 211 71.1
VMungo1215G2436 Vigna mungo HOM05D008087 ORTHO05D010187 2.0e-67 259.6 209 71.3
MSTRG.19463 Avicennia marina HOM05D008087 ORTHO05D010187 4.5e-67 258.5 202 74.8
CANSAT56G3514 Cannabis sativa HOM05D008087 ORTHO05D010187 7.7e-67 257.7 212 71.2
CiPaw.03G206800 Carya illinoinensis HOM05D008087 ORTHO05D010187 1.0e-66 257.3 212 72.6
Cpa.g.sc28.44 Carica papaya HOM05D008087 ORTHO05D010187 1.3e-66 256.9 213 69.0
Oeu049121.1 Olea europaea HOM05D008087 ORTHO05D010187 3.8e-66 255.4 206 70.4
Lj4P912T21 Lonicera japonica HOM05D008087 ORTHO05D010187 8.6e-66 254.2 212 69.8
Lalb_Chr07g0181171 Lupinus albus HOM05D008087 ORTHO05D010187 8.6e-66 254.2 209 70.3
Solyc07g041770.1 Solanum lycopersicum HOM05D008087 ORTHO05D010187 8.6e-66 254.2 211 67.3
TAR383G0588 Trochodendron aralioides HOM05D008087 ORTHO05D010187 8.6e-66 254.2 206 68.4
SalBow6G2426 Salvia bowleyana HOM05D008087 ORTHO05D010187 1.2e-64 250.4 199 72.9
Sopen07g021260 Solanum pennellii HOM05D008087 ORTHO05D010187 1.2e-64 250.4 211 67.3
PGSC0003DMG400013001 Solanum tuberosum HOM05D008087 ORTHO05D010187 1.2e-64 250.4 211 67.8
Cc06_g12130 Coffea canephora HOM05D008087 ORTHO05D010187 1.8e-63 246.5 211 68.7
Rhsim05G0007800 Rhododendron simsii HOM05D008087 ORTHO05D010187 4.0e-63 245.4 199 68.8
arahy.Tifrunner.gnm1.ann1.TB6UZQ Arachis hypogaea HOM05D008087 ORTHO05D010187 2.6e-62 242.7 209 66.0
Migut.J00928 Erythranthe guttata HOM05D008087 ORTHO05D010187 2.4e-60 236.1 201 70.6
Psat4g017680 Pisum sativum HOM05D008087 ORTHO05D010187 3.1e-60 235.7 211 67.8
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 4.1e-60 235.3 182 72.5
PSO135G0253 Papaver somniferum HOM05D008087 ORTHO05D010187 2.7e-59 232.6 211 63.5
Nn8g38653 Nelumbo nucifera HOM05D008087 ORTHO05D010187 3.5e-59 232.3 211 65.4
TPR.G12579 Trifolium pratense HOM05D008087 ORTHO05D010187 2.3e-58 229.6 209 65.6
AUR62028937 Chenopodium quinoa HOM05D008087 ORTHO05D010187 2.5e-57 226.1 213 60.6
Medtr4g125370 Medicago truncatula HOM05D008087 ORTHO05D010187 2.1e-56 223.0 206 67.0
Duzib187G0811 Durio zibethinus HOM05D008087 ORTHO05D010187 6.1e-56 221.5 159 74.8
Eucgr.L02787 Eucalyptus grandis HOM05D008087 ORTHO05D010187 1.8e-55 219.9 208 63.5
MBI19_g11825_MAGBIO Magnolia biondii HOM05D008087 ORTHO05D010187 2.9e-53 212.6 211 57.3
CSS0034066 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 1.1e-52 210.7 168 69.6
Aqoxy1G01322 Aquilegia oxysepala HOM05D008087 ORTHO05D010187 1.9e-52 209.9 206 61.2
PGR044G2582 Punica granatum HOM05D008087 ORTHO05D010187 3.0e-50 202.6 206 60.2
Ca_21320_v3 Cicer arietinum L. HOM05D008087 ORTHO05D010187 7.3e-49 198.0 206 60.7
Sc08g0008880 Simmondsia chinensis HOM05D008087 ORTHO05D010187 2.9e-45 186.0 183 59.6
Lsat_1_v5_gn_7_35101 Lactuca sativa HOM05D004023 ORTHO05D004681 1.3e-42 177.2 207 53.1
Ah.09g231600 Amaranthus hybridus HOM05D008087 ORTHO05D010187 3.9e-42 175.6 187 54.0
Nitab4.5_0000343g0200 Nicotiana tabacum HOM05D008087 ORTHO05D010187 2.7e-35 152.9 106 77.4
AL5G20930 Arabidopsis lyrata HOM05D008087 ORTHO05D010187 3.5e-35 152.5 203 45.8
Peaxi162Scf00127g00202 Petunia axillaris HOM05D008087 ORTHO05D010187 7.8e-35 151.4 106 76.4
AT3G42725 Arabidopsis thaliana HOM05D008087 ORTHO05D010187 1.7e-34 150.2 203 45.8
THA.LOC104811009 Tarenaya hassleriana HOM05D008087 ORTHO05D010187 1.3e-29 134.0 212 44.3
PSO724G0984 Papaver somniferum HOM05D008087 ORTHO05D010187 1.6e-24 117.1 106 62.3
PGR044G2297 Punica granatum HOM05D008087 ORTHO05D010187 1.4e-23 114.0 121 56.2
MD15G1091800 Malus domestica HOM05D008087 ORTHO05D010187 1.3e-21 107.5 91 64.8
Zm00001eb005810 Zea mays HOM05D008087 ORTHO05D010187 4.6e-19 99.0 203 38.4
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 7.8e-19 98.2 93 64.5
Ah.14g084950 Amaranthus hybridus HOM05D008087 ORTHO05D010187 1.1e-17 94.4 112 53.6
ATR0598G047 Amborella trichopoda HOM05D008087 ORTHO05D010187 1.1e-17 94.4 116 41.4
HPP92_026302 Vanilla planifolia HOM05D008087 ORTHO05D010187 1.8e-15 87.0 180 37.8
SMO358G0701 Selaginella moellendorffii HOM05D016812 ORTHO05D010187 1.6e-11 73.9 182 33.0
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 4.8e-08 62.4 57 59.6
Ciclev10030215m.g Citrus clementina HOM05D008087 ORTHO05D010187 9.0e-07 58.2 164 35.4


User provided reference genes

Program Settings