Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0094881 Rosa chinensis HOM05D004023 ORTHO05D004681 2.7e-166 588.6 291 100.0
FvH4_1g08620 Fragaria vesca HOM05D004023 ORTHO05D004681 2.7e-134 482.3 292 83.2
FAN28G2268 Fragaria x ananassa HOM05D004023 ORTHO05D004681 7.9e-134 480.7 292 82.9
FAN23G1893 Fragaria x ananassa HOM05D004023 ORTHO05D004681 1.0e-133 480.3 292 82.9
FAN26G1792 Fragaria x ananassa HOM05D004023 ORTHO05D004681 1.9e-132 476.1 292 82.5
FAN26G3281 Fragaria x ananassa HOM05D004023 ORTHO05D004681 5.6e-132 474.6 292 82.5
FAN19G1115 Fragaria x ananassa HOM05D004023 ORTHO05D004681 2.3e-117 426.0 257 83.3
MD02G1091000 Malus domestica HOM05D004023 ORTHO05D004681 2.6e-89 332.8 289 59.9
MD15G1217100 Malus domestica HOM05D004023 ORTHO05D004681 4.2e-87 325.5 290 57.2
Prupe.7G199400 Prunus persica HOM05D004023 ORTHO05D004681 1.8e-82 310.1 288 56.2
Dinv42390 Davidia involucrata HOM05D004023 ORTHO05D004681 1.3e-80 303.9 286 54.9
CiPaw.03G206900 Carya illinoinensis HOM05D004023 ORTHO05D004681 1.7e-80 303.5 288 54.9
Cfa002993 Carpinus fangiana HOM05D004023 ORTHO05D004681 3.2e-79 299.3 289 55.4
Haze_26009 Corylus avellana HOM05D004023 ORTHO05D004681 7.2e-79 298.1 289 55.0
Atru.chr7.1700 Acer truncatum HOM05D004023 ORTHO05D004681 1.0e-77 294.3 290 51.7
Thecc.09G077600 Theobroma cacao HOM05D004023 ORTHO05D004681 9.8e-76 287.7 288 52.1
AL3G43670 Arabidopsis lyrata HOM05D004023 ORTHO05D004681 8.3e-75 284.6 286 51.4
AT2G06025 Arabidopsis thaliana HOM05D004023 ORTHO05D004681 8.3e-75 284.6 286 51.7
Potri.006G142100 Populus trichocarpa HOM05D004023 ORTHO05D004681 1.8e-74 283.5 292 52.7
Lj6g0013866 Lotus japonicus HOM05D004023 ORTHO05D004681 1.6e-73 280.4 297 49.5
Phvul.009G227400 Phaseolus vulgaris HOM05D004023 ORTHO05D004681 2.0e-73 280.0 296 50.7
QL11p000695 Quercus lobata HOM05D004023 ORTHO05D004681 2.7e-73 279.6 300 52.0
Glyma.09G069500 Glycine max HOM05D004023 ORTHO05D004681 3.5e-73 279.3 302 50.3
Glyma.15G177500 Glycine max HOM05D004023 ORTHO05D004681 3.5e-73 279.3 290 52.1
Gohir.A06G076200 Gossypium hirsutum HOM05D004023 ORTHO05D004681 1.0e-72 277.7 288 51.0
Carub.0003s2716 Capsella rubella HOM05D004023 ORTHO05D004681 3.8e-72 275.8 289 50.5
Ciclev10009135m.g Citrus clementina HOM05D004023 ORTHO05D004681 3.8e-72 275.8 292 52.4
VMungo1309G2832 Vigna mungo HOM05D004023 ORTHO05D004681 5.0e-72 275.4 305 49.2
Sabra06G0111200 Salix brachista HOM05D004023 ORTHO05D004681 6.6e-72 275.0 293 51.2
TWI63G1612 Tripterygium wilfordii HOM05D004023 ORTHO05D004681 4.2e-71 272.3 289 50.2
Eucgr.C00816 Eucalyptus grandis HOM05D004023 ORTHO05D004681 9.5e-71 271.2 294 49.0
TAR383G0448 Trochodendron aralioides HOM05D004023 ORTHO05D004681 1.2e-70 270.8 289 50.2
BcaB06g26883 Brassica carinata HOM05D004023 ORTHO05D004681 2.8e-70 269.6 286 50.3
CSS0007502 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 2.8e-70 269.6 281 50.9
Actinidia29930 Actinidia chinensis HOM05D004023 ORTHO05D004681 4.7e-70 268.9 291 52.2
CANSAT56G0673 Cannabis sativa HOM05D004023 ORTHO05D004681 4.7e-70 268.9 290 50.3
Lalb_Chr08g0232581 Lupinus albus HOM05D004023 ORTHO05D004681 4.7e-70 268.9 274 51.5
BcaC06g35952 Brassica carinata HOM05D004023 ORTHO05D004681 6.1e-70 268.5 286 49.7
Medtr2g041620 Medicago truncatula HOM05D004023 ORTHO05D004681 6.1e-70 268.5 271 50.6
Sp3g24610 Schrenkiella parvula HOM05D004023 ORTHO05D004681 8.0e-70 268.1 287 51.2
arahy.Tifrunner.gnm1.ann1.XHC94G Arachis hypogaea HOM05D004023 ORTHO05D004681 2.3e-69 266.5 273 50.5
A07p06280 Brassica napus HOM05D004023 ORTHO05D004681 2.3e-69 266.5 286 49.3
Aa31sc133G50 Aethionema arabicum HOM05D004023 ORTHO05D004681 5.2e-69 265.4 287 51.2
BolC7t41351H Brassica oleracea HOM05D004023 ORTHO05D004681 6.8e-69 265.0 286 49.0
arahy.Tifrunner.gnm1.ann1.KDYD97 Arachis hypogaea HOM05D004023 ORTHO05D004681 1.2e-68 264.2 276 50.4
CSS0006992 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 1.2e-68 264.2 281 50.2
Ca_23416_v3 Cicer arietinum L. HOM05D004023 ORTHO05D004681 1.2e-68 264.2 271 50.9
TPR.G28584 Trifolium pratense HOM05D004023 ORTHO05D004681 1.5e-68 263.8 300 48.3
CSS0019806 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 2.0e-68 263.5 282 50.4
CARHR103710 Cardamine hirsuta HOM05D004023 ORTHO05D004681 2.6e-68 263.1 287 50.9
GSVIVG01015086001 Vitis vinifera HOM05D004023 ORTHO05D004681 3.4e-68 262.7 261 51.7
BraA07t28423Z Brassica rapa HOM05D004023 ORTHO05D004681 5.7e-68 261.9 286 48.6
THA.LOC104826588 Tarenaya hassleriana HOM05D004023 ORTHO05D004681 1.3e-67 260.8 290 50.7
TWI34G0375 Tripterygium wilfordii HOM05D004023 ORTHO05D004681 3.7e-67 259.2 254 53.5
Gorai.010G088100 Gossypium raimondii HOM05D004023 ORTHO05D004681 4.9e-67 258.8 270 51.1
Cc06_g12120 Coffea canephora HOM05D004023 ORTHO05D004681 8.3e-67 258.1 288 47.2
arahy.Tifrunner.gnm1.ann1.KW18SN Arachis hypogaea HOM05D004023 ORTHO05D004681 1.8e-66 256.9 242 52.9
PGR142G0045 Punica granatum HOM05D004023 ORTHO05D004681 3.2e-66 256.1 292 49.0
CsaV3_1G041000 Cucumis sativus L. HOM05D004023 ORTHO05D004681 9.2e-66 254.6 291 47.8
CDE05G3056 Ceratophyllum demersum HOM05D004023 ORTHO05D004681 2.5e-63 246.5 289 46.0
DCAR_031922 Daucus carota HOM05D004023 ORTHO05D004681 9.5e-63 244.6 269 49.4
Thhalv10002632m.g Eutrema salsugineum HOM05D004023 ORTHO05D004681 9.5e-63 244.6 287 48.4
Aqoxy7G01044 Aquilegia oxysepala HOM05D004023 ORTHO05D004681 2.1e-62 243.4 296 46.6
CSS0012197 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 3.6e-62 242.7 282 48.6
ECA240G3187 Erigeron canadensis HOM05D004023 ORTHO05D004681 8.0e-62 241.5 257 51.4
Nitab4.5_0005767g0010 Nicotiana tabacum HOM05D004023 ORTHO05D004681 8.0e-62 241.5 258 49.2
Psat1g134240 Pisum sativum HOM05D004023 ORTHO05D004681 8.9e-61 238.0 221 54.8
Glyma.13G110200 Glycine max HOM05D004023 ORTHO05D004681 1.2e-60 237.7 248 51.2
Lsat_1_v5_gn_7_35101 Lactuca sativa HOM05D004023 ORTHO05D004681 2.0e-60 236.9 261 51.0
CSS0047726 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 1.7e-59 233.8 290 46.6
Peaxi162Scf00554g00920 Petunia axillaris HOM05D004023 ORTHO05D004681 2.2e-59 233.4 242 50.4
Manes.03G040200 Manihot esculenta HOM05D004023 ORTHO05D004681 8.3e-59 231.5 290 45.2
C07p09330 Brassica napus HOM05D004023 ORTHO05D004681 1.4e-58 230.7 242 50.0
AUR62028938 Chenopodium quinoa HOM05D004023 ORTHO05D004681 1.9e-58 230.3 263 46.8
HanXRQChr09g0237831 Helianthus annuus HOM05D004023 ORTHO05D004681 7.0e-58 228.4 223 52.9
Nitab4.5_0000024g0190 Nicotiana tabacum HOM05D004023 ORTHO05D004681 2.0e-57 226.9 281 45.2
PGSC0003DMG400027761 Solanum tuberosum HOM05D004023 ORTHO05D004681 4.6e-57 225.7 267 47.2
AUR62025247 Chenopodium quinoa HOM05D004023 ORTHO05D004681 7.8e-57 224.9 232 48.3
Sed0007208 Sechium edule HOM05D004023 ORTHO05D004681 7.8e-57 224.9 274 43.8
Duzib168G1033 Durio zibethinus HOM05D004023 ORTHO05D004681 2.3e-56 223.4 288 43.4
DCAR_024747 Daucus carota HOM05D004023 ORTHO05D004681 1.2e-54 217.6 235 51.5
ATR0598G151 Amborella trichopoda HOM05D004023 ORTHO05D004681 4.7e-54 215.7 245 46.5
TAR369G0443 Trochodendron aralioides HOM05D004023 ORTHO05D004681 2.6e-52 209.9 232 50.0
Migut.L01563 Erythranthe guttata HOM05D004023 ORTHO05D004681 3.4e-52 209.5 243 45.3
Gorai.013G224500 Gossypium raimondii HOM05D004023 ORTHO05D004681 4.4e-52 209.1 289 42.6
SEGI_14760 Sequoiadendron giganteum HOM05D004023 ORTHO05D004681 5.8e-52 208.8 236 51.3
Gohir.A13G191000 Gossypium hirsutum HOM05D004023 ORTHO05D004681 9.8e-52 208.0 289 42.2
Gohir.D13G196385 Gossypium hirsutum HOM05D004023 ORTHO05D004681 1.3e-51 207.6 289 42.6
MBI13_g42818_MAGBIO Magnolia biondii HOM05D004023 ORTHO05D004681 8.3e-51 204.9 211 49.8
Gohir.D06G075200 Gossypium hirsutum HOM05D004023 ORTHO05D004681 1.4e-50 204.1 218 50.9
Phvul.003G131100 Phaseolus vulgaris HOM05D004023 ORTHO05D004681 2.4e-50 203.4 296 43.9
Solyc05g025890.3 Solanum lycopersicum HOM05D004023 ORTHO05D004681 2.4e-50 203.4 210 50.5
CDE05G0867 Ceratophyllum demersum HOM05D004023 ORTHO05D004681 3.2e-50 203.0 184 54.9
Sopen05g021320 Solanum pennellii HOM05D004023 ORTHO05D004681 3.2e-50 203.0 208 51.0
ClCG03G015110 Citrullus lanatus HOM05D004023 ORTHO05D004681 7.1e-50 201.8 333 38.1
Hma1.2p1_1711F.1_g298750 Hydrangea macrophylla HOM05D004023 ORTHO05D004681 3.0e-48 196.4 231 46.8
Migut.D00690 Erythranthe guttata HOM05D004023 ORTHO05D004681 3.3e-47 193.0 237 46.0
Hund08779 Selenicereus undatus HOM05D004023 ORTHO05D004681 3.3e-47 193.0 208 50.0
Cc01_g06740 Coffea canephora HOM05D004023 ORTHO05D004681 4.3e-47 192.6 233 45.5
ATR1096G005 Amborella trichopoda HOM05D004023 ORTHO05D004681 5.6e-47 192.2 239 45.2
MSTRG.18474 Avicennia marina HOM05D004023 ORTHO05D004681 7.3e-47 191.8 258 42.6
AUR62003487 Chenopodium quinoa HOM05D004023 ORTHO05D004681 7.3e-47 191.8 227 47.1
AUR62017796 Chenopodium quinoa HOM05D004023 ORTHO05D004681 9.5e-47 191.4 227 47.1
Ah.03g147260 Amaranthus hybridus HOM05D004023 ORTHO05D004681 1.6e-46 190.7 239 44.8
Rhsim13G0202100 Rhododendron simsii HOM05D004023 ORTHO05D004681 6.2e-46 188.7 240 45.8
Eucgr.J00649 Eucalyptus grandis HOM05D004023 ORTHO05D004681 1.1e-45 188.0 244 45.5
vmacro04098 Vaccinium macrocarpon HOM05D004023 ORTHO05D004681 1.8e-45 187.2 240 45.4
Actinidia24483 Actinidia chinensis HOM05D004023 ORTHO05D004681 2.3e-45 186.8 232 45.3
PSO384G4677 Papaver somniferum HOM05D004023 ORTHO05D004681 2.3e-45 186.8 232 46.6
Sc18g0002510 Simmondsia chinensis HOM05D004023 ORTHO05D004681 6.8e-45 185.3 222 47.7
HPP92_013291 Vanilla planifolia HOM05D004023 ORTHO05D004681 6.8e-45 185.3 210 49.0
Zm00001eb401920 Zea mays HOM05D004023 ORTHO05D004681 1.2e-44 184.5 255 42.7
PGR119G0815 Punica granatum HOM05D004023 ORTHO05D004681 1.5e-44 184.1 231 44.6
GSVIVG01037415001 Vitis vinifera HOM05D004023 ORTHO05D004681 1.5e-44 184.1 232 45.7
Os03g0177000 Oryza sativa ssp. japonica HOM05D004023 ORTHO05D004681 2.6e-44 183.3 258 43.8
Rhsim03G0227800 Rhododendron simsii HOM05D004023 ORTHO05D004681 2.6e-44 183.3 287 40.8
Hund12723 Selenicereus undatus HOM05D004023 ORTHO05D004681 2.2e-43 180.3 240 42.9
Aqoxy1G00042 Aquilegia oxysepala HOM05D004023 ORTHO05D004681 2.9e-43 179.9 227 46.7
PSO339G3635 Papaver somniferum HOM05D004023 ORTHO05D004681 1.1e-42 177.9 233 45.1
PGSC0003DMG400004653 Solanum tuberosum HOM05D004023 ORTHO05D004681 1.4e-42 177.6 237 42.6
MBI13_g41748_MAGBIO Magnolia biondii HOM05D004023 ORTHO05D004681 2.4e-42 176.8 213 46.5
PSO063G3828 Papaver somniferum HOM05D004023 ORTHO05D004681 5.4e-42 175.6 215 44.2
Sopen12g034560 Solanum pennellii HOM05D004023 ORTHO05D004681 5.4e-42 175.6 237 43.0
DCAR_006328 Daucus carota HOM05D004023 ORTHO05D004681 7.1e-42 175.3 237 44.3
Solyc12g099940.2 Solanum lycopersicum HOM05D004023 ORTHO05D004681 1.6e-41 174.1 237 43.0
EL10Ac8g19063 Beta vulgaris HOM05D004023 ORTHO05D004681 2.1e-41 173.7 262 37.8
CAN.G484.8 Capsicum annuum HOM05D004023 ORTHO05D004681 2.1e-41 173.7 237 42.6
Lj4A912T25 Lonicera japonica HOM05D004023 ORTHO05D004681 7.8e-41 171.8 258 41.9
Nitab4.5_0001925g0260 Nicotiana tabacum HOM05D004023 ORTHO05D004681 8.6e-40 168.3 277 41.5
HanXRQChr14g0431991 Helianthus annuus HOM05D004023 ORTHO05D004681 2.5e-39 166.8 240 42.9
vmacro06339 Vaccinium macrocarpon HOM05D004023 ORTHO05D004681 2.5e-39 166.8 239 42.7
MELO3C015518.2 Cucumis melo HOM05D004023 ORTHO05D004681 1.6e-38 164.1 194 45.9
Zm00001eb401960 Zea mays HOM05D004023 ORTHO05D004681 3.1e-37 159.8 210 44.8
Glyma.17G049500 Glycine max HOM05D004023 ORTHO05D004681 5.2e-37 159.1 209 45.0
SalBow5G0641 Salvia bowleyana HOM05D004023 ORTHO05D004681 1.5e-36 157.5 204 41.2
Nn8g38657 Nelumbo nucifera HOM05D004023 ORTHO05D004681 2.0e-36 157.1 166 51.2
Sed0008804 Sechium edule HOM05D004023 ORTHO05D004681 3.2e-34 149.8 289 35.3
unitig_60.g25636 Utricularia gibba HOM05D004023 ORTHO05D004681 2.1e-33 147.1 253 36.4
Mapoly0023s0080 Marchantia polymorpha HOM05D004023 ORTHO05D004681 3.5e-33 146.4 228 38.2
unitig_0.g313 Utricularia gibba HOM05D004023 ORTHO05D004681 6.0e-33 145.6 224 40.2
SGA_v2.0_scaffold29G12111 Striga asiatica HOM05D004023 ORTHO05D004681 1.3e-32 144.4 297 33.0
EL10Ac6g15385 Beta vulgaris HOM05D004023 ORTHO05D004681 1.7e-32 144.1 281 36.7
Peaxi162Scf00062g00920 Petunia axillaris HOM05D004023 ORTHO05D004681 6.6e-32 142.1 307 34.2
Lsat_1_v5_gn_2_38101 Lactuca sativa HOM05D004023 ORTHO05D004681 4.3e-31 139.4 226 40.3
PSO339G4574 Papaver somniferum HOM05D004023 ORTHO05D004681 1.3e-30 137.9 204 39.2
Cpa.g.sc28.45 Carica papaya HOM05D004023 ORTHO05D004681 5.3e-29 132.5 249 39.8
PSO384G0928 Papaver somniferum HOM05D004023 ORTHO05D004681 3.4e-28 129.8 204 38.7
PSO384G3720 Papaver somniferum HOM05D004023 ORTHO05D004681 3.4e-28 129.8 204 38.7
arahy.Tifrunner.gnm1.ann1.NU1P8G Arachis hypogaea HOM05D004023 ORTHO05D004681 9.9e-28 128.3 245 33.1
AagrBONN_evm.TU.Sc2ySwM_117.2238 Anthoceros agrestis HOM05D004023 ORTHO05D004681 4.9e-27 125.9 207 38.2
SMO200G0269 Selaginella moellendorffii HOM05D004023 ORTHO05D004681 4.2e-26 122.9 179 38.5
Lj2C939G1 Lonicera japonica HOM05D004023 ORTHO05D004681 5.4e-26 122.5 256 33.6
Nn7g37124 Nelumbo nucifera HOM05D004023 ORTHO05D004681 9.3e-26 121.7 131 51.1
Oeu020552.2 Olea europaea HOM05D004023 ORTHO05D004681 1.0e-24 118.2 106 56.6
SalBow6G6388 Salvia bowleyana HOM05D004023 ORTHO05D004681 3.3e-23 113.2 137 47.4
Nitab4.5_0011805g0030 Nicotiana tabacum HOM05D004023 ORTHO05D004681 4.3e-23 112.8 171 42.7
Actinidia07003 Actinidia chinensis HOM05D004023 ORTHO05D004681 7.3e-23 112.1 168 41.7
Zm00001eb408770 Zea mays HOM05D004023 ORTHO05D004681 5.8e-20 102.4 103 51.5
Lj2C946G11 Lonicera japonica HOM05D004023 ORTHO05D004681 1.2e-17 94.7 215 32.1
PSO339G0741 Papaver somniferum HOM05D004023 ORTHO05D004681 2.1e-17 94.0 191 34.0
PSO339G2030 Papaver somniferum HOM05D004023 ORTHO05D004681 2.7e-17 93.6 153 37.3
PSO478G2869 Papaver somniferum HOM05D004023 ORTHO05D004681 2.3e-16 90.5 134 39.6
CSS0000978 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 5.1e-16 89.4 215 32.1
Pp3c12_9920 Physcomitrium patens HOM05D004023 ORTHO05D004681 2.5e-15 87.0 206 33.5
Oeu013106.1 Olea europaea HOM05D004023 ORTHO05D004681 4.9e-11 72.8 107 39.3
Lalb_Chr12g0200121 Lupinus albus HOM05D004023 ORTHO05D004681 1.4e-10 71.2 93 45.2
Glyma.08G144367 Glycine max HOM05D004023 ORTHO05D004681 7.1e-10 68.9 75 50.7
AagrBONN_evm.TU.Sc2ySwM_344.3527 Anthoceros agrestis HOM05D005733 ORTHO05D007442 5.1e-08 62.8 199 29.6
Lalb_Chr12g0200111 Lupinus albus HOM05D004023 ORTHO05D004681 1.1e-07 61.6 56 55.4
Mapoly0019s0038 Marchantia polymorpha HOM05D005733 ORTHO05D007442 2.5e-07 60.5 97 36.1
Cc06_g14000 Coffea canephora HOM05D005733 ORTHO05D007442 9.6e-07 58.5 210 29.0
Cre02.g084550 Chlamydomonas reinhardtii HOM05D005733 ORTHO05D007442 3.7e-06 56.6 99 36.4


User provided reference genes

Program Settings